LOC101268945 (LOC106568165)


Basic Information

Item Value
gene id LOC101268945
gene name LOC106568165
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19445394 ~ 19449219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622946.2
tctctcttgctctctctgtgtgtgtgtgtgtctctcctcccttccttctgCTCTCCTCTGTCACATTTATACTGACAGTTCAATGAGACAGCTGAGACATTTTGAGTTCCTTGTGCGTGTGTGCGCCAGGGTCTCACCTCTGTATCTGGGGGCACTACATCGTGTGACTGCTTTGTGAGAAATGGCATACAGCCTATGGATTGCCTTACTCATGCTCCCGGTTCTGGTGCACTCTCAAAGTGGAGAAGAATTGGTTGACAATGAACCCAGAATACTCTGCACCTCTCATCTCAGTGTCTCGGCAGCAAACAGCCTAACCTGCCACCTTGATGATGACACCGATGATGAAATGGAGGACATAAAAGTCATGAGTCTTTGCTACACAGATGACAAAAAGCAACGCTGTTTGAAAGAGAAGGGGAATAATGTCACATTTACGGACCTGGACACTCTGCAATCGTATAATCTCACCGTTCAATTAAAACGAGGTGGCACATTTTGGAAAACAATGAGTTTGAAAAAAATAATTAAACCCAGGAGTCCTTGGGTGGTGAATGCCACATTTCTGAGGAGCTCCAACCGGGCTCTTATATACATTGGGAATCCATACCTGAAGGATTACCTGAAACCCAGCAATCAACTGTTCCAACTTCGCATCTGGAGTGTCAAAAATACTCTGGTTAAAAACATAACCTATCAGCCTCTGATCATTGAGGGGGACGAGTACCTCCATAAGAACACAGAGTATCATGTCAAGGTTCGAGCCAAGCCAAGCGGAGGGTACTTTGATGGCAGTTGGAGTGAGTGGAGCGCCTCTATCAGTTTCAGCACCAACACAGAGACAGACGTGCAGGTGCTTTCCTATTCTCTCATCGTGCCCATTGCTTCTCTGCTGTTGGTTACTTTGGCAGTTGGTATTTTCTGGAGAAAACAAATACATTCCTTCATATGGCCAAGCATTCCACATCCCAAACACACACTTCTCCAGATCTCCCAGACCTATGAGCCAATGAAGGGCCCACCTGTGAGCTTTAACCCCGAGGTGTTCAGTGACCTCAACATCCAGCTGGTGGAGCCGGACAAGGAGCAAGACCTTACctccctaccccctgactctgACTCCCATCGACTCGCTGAGGTCAAAGATCAATACCTCATTCAAGAGCGTGATGGGGATACGACGTCCTGCCAAACCACCAGTAGTGGAGGGTCGGAGACCATACTGCTTAGGTGTGAGTCCCCAGGAGTGCACCTCAACGGTGGGGCGGGGAGCAGTAGGAACAGTGGCTCCACCGTGGGGATCCTGGATCTGAGGAGTGACTTTGAGAGCGTGGAGACAGACGACAGTGATGGTAACATTGGTCCTGAGGGGCTAGGTGCTACTCAGCAAGGAGGCAAGGATGAGGCTTATGTCACCATGTCTAGTTTCTATCAGatccagtgagagagagatggagagacagacagagagggagcgagacagacagacggaattATCTATTCAAGATGAATTATAGCTGCTTATTACATTCTTACTCTGAGTGACTTTGGCTGCTTTTATTTGAAGTCTATTTAATTCACCGTGACTCAAACTGACTATCCACTGACCCCCAGTATCACGAGACTAGCAGAACTCAATGCACATGTTATTTACAAATGATAGGAGACAGAACAGGAATCATCCTCATTGTGTTTGTTTGGTTTTGTGTTATTAATTTGTTGCTAGTTGCTAAGAAACAAGACAAGGGAGGACTTAAACAACTTGAAATACAACGCTGCACCTCCCTTATTATCCTTTGTGTTTTCACATCCCATACTATATTAACCCCGTCGGTATACTGACGAGCCACCATGACACCTTGGCGTTATACATACTGCTGCTTCATATCACAGAGATACTCTTTACCATGACAACAGCTGCTAAATAAacctagggctctattcaatccataTTGCGGAAGTTCAGTGTTACAGCATGAATGAAATATAAAGGTAATGTTCCCGTGTTagtggagactgcattcatgATAAACgttgcatatgtcggctcaatcggaactTAACCTTCAATTTCTATTGCGCAATATGTTACACTTCAGTGAtatggattgaatagagcccctagAATGTCAATTCTTCAGGGTTTAAACCCTTCTAAACATAATTTAATCACAGCTTATGTGTTTGTCATTATGTTTTACATCTTTTGCACATAAGTGATTGTATTTCCTGCACAGTTACCagtatgttatttttttttttacactgactTGGATGTATTAtagtattatactatactatgtacTATCATACATCATAGTTTTCAATGCAGAACGCTTTATTATTTTCTTGAACACTTTGTGAGACTTTAGCAGAGCATTAAACATAAAGTCATCATCGGCAAATTACtgctttgtttttattttactgtACGATCCGGTATTTGTATATTTTAATCTGACAAATGTGACAACATTATCTGTGTAGAAATGACCACGTTGTTACATTTtgtgtttaacatttttattaaaCAGATTAATTCC
>XM_021622945.2
AATCTTGAATAGATAATtcaatttttctctctctctcgctctccctctctctcttctctctctctcttgctctctctgtgtgtgtgtgtgtctctcctcccttccttctgCTCTCCTCTGTCACATTTATACTGACAGTTCAATGAGACAGCTGAGACATTTTGAGTTCCTTGTGCGTGTGTGCGCCAGGGTCTCACCTCTGTATCTGGGGGCACTACATCGTGTGACTGCTTTGTGAGAAATGGCATACAGCCTATGGATTGCCTTACTCATGCTCCCGGTTCTGGTGCACTCTCAAAGTGGAGAAGAATTGGTTGACAATGAACCCAGAATACTCTGCACCTCTCATCTCAGTGTCTCGGCAGCAAACAGCCTAACCTGCCACCTTGATGATGACACCGATGATGAAATGGAGGACATAAAAGTCATGAGTCTTTGCTACACAGATGACAAAAAGCAACGCTGTTTGAAAGAGAAGGGGAATAATGTCACATTTACGGACCTGGACACTCTGCAATCGTATAATCTCACCGTTCAATTAAAACGAGGTGGCACATTTTGGAAAACAATGAGTTTGAAAAAAATAATTAAACCCAGGAGTCCTTGGGTGGTGAATGCCACATTTCTGAGGAGCTCCAACCGGGCTCTTATATACATTGGGAATCCATACCTGAAGGATTACCTGAAACCCAGCAATCAACTGTTCCAACTTCGCATCTGGAGTGTCAAAAATACTCTGGTTAAAAACATAACCTATCAGCCTCTGATCATTGAGGGGGACGAGTACCTCCATAAGAACACAGAGTATCATGTCAAGGTTCGAGCCAAGCCAAGCGGAGGGTACTTTGATGGCAGTTGGAGTGAGTGGAGCGCCTCTATCAGTTTCAGCACCAACACAGAGACAGACGTGCAGGTGCTTTCCTATTCTCTCATCGTGCCCATTGCTTCTCTGCTGTTGGTTACTTTGGCAGTTGGTATTTTCTGGAGAAAACAAATACATTCCTTCATATGGCCAAGCATTCCACATCCCAAACACACACTTCTCCAGATCTCCCAGACCTATGAGCCAATGAAGCAGGGCCCACCTGTGAGCTTTAACCCCGAGGTGTTCAGTGACCTCAACATCCAGCTGGTGGAGCCGGACAAGGAGCAAGACCTTACctccctaccccctgactctgACTCCCATCGACTCGCTGAGGTCAAAGATCAATACCTCATTCAAGAGCGTGATGGGGATACGACGTCCTGCCAAACCACCAGTAGTGGAGGGTCGGAGACCATACTGCTTAGGTGTGAGTCCCCAGGAGTGCACCTCAACGGTGGGGCGGGGAGCAGTAGGAACAGTGGCTCCACCGTGGGGATCCTGGATCTGAGGAGTGACTTTGAGAGCGTGGAGACAGACGACAGTGATGGTAACATTGGTCCTGAGGGGCTAGGTGCTACTCAGCAAGGAGGCAAGGATGAGGCTTATGTCACCATGTCTAGTTTCTATCAGatccagtgagagagagatggagagacagacagagagggagcgagacagacagacggaattATCTATTCAAGATGAATTATAGCTGCTTATTACATTCTTACTCTGAGTGACTTTGGCTGCTTTTATTTGAAGTCTATTTAATTCACCGTGACTCAAACTGACTATCCACTGACCCCCAGTATCACGAGACTAGCAGAACTCAATGCACATGTTATTTACAAATGATAGGAGACAGAACAGGAATCATCCTCATTGTGTTTGTTTGGTTTTGTGTTATTAATTTGTTGCTAGTTGCTAAGAAACAAGACAAGGGAGGACTTAAACAACTTGAAATACAACGCTGCACCTCCCTTATTATCCTTTGTGTTTTCACATCCCATACTATATTAACCCCGTCGGTATACTGACGAGCCACCATGACACCTTGGCGTTATACATACTGCTGCTTCATATCACAGAGATACTCTTTACCATGACAACAGCTGCTAAATAAacctagggctctattcaatccataTTGCGGAAGTTCAGTGTTACAGCATGAATGAAATATAAAGGTAATGTTCCCGTGTTagtggagactgcattcatgATAAACgttgcatatgtcggctcaatcggaactTAACCTTCAATTTCTATTGCGCAATATGTTACACTTCAGTGAtatggattgaatagagcccctagAATGTCAATTCTTCAGGGTTTAAACCCTTCTAAACATAATTTAATCACAGCTTATGTGTTTGTCATTATGTTTTACATCTTTTGCACATAAGTGATTGTATTTCCTGCACAGTTACCagtatgttatttttttttttacactgactTGGATGTATTAtagtattatactatactatgtacTATCATACATCATAGTTTTCAATGCAGAACGCTTTATTATTTTCTTGAACACTTTGTGAGACTTTAGCAGAGCATTAAACATAAAGTCATCATCGGCAAATTACtgctttgtttttattttactgtACGATCCGGTATTTGTATATTTTAATCTGACAAATGTGACAACATTATCTGTGTAGAAATGACCACGTTGTTACATTTtgtgtttaacatttttattaaaCAGATTAATT

Function

NR:

description
interleukin-7 receptor subunit alpha isoform X1

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622946.2 False 2543 mRNA 0.43 8 19445394 19449159
XM_021622945.2 True 2604 mRNA 0.43 8 19445396 19449219

Neighbor

gene id symbol gene type direction distance location
LOC110537139 ppp1r3b coding downstream 37112 19372135 ~ 19408282 (-)
LOC110537138 thex1 coding downstream 92918 19349578 ~ 19352476 (-)
LOC110537137 LOC106568162 coding downstream 96928 19307196 ~ 19348466 (-)
LOC118937913 NA coding downstream 144999 19300326 ~ 19300395 (-)
LOC118937911 NA coding downstream 145876 19299449 ~ 19299518 (-)
LOC110537143 LOC106568167 coding upstream 10149 19459368 ~ 19535181 (-)
LOC110537144 LOC106568168 coding upstream 101734 19550953 ~ 19569458 (-)
LOC118937638 NA coding upstream 129186 19578405 ~ 19580234 (-)
LOC110537146 LOC106568171 coding upstream 131684 19580903 ~ 19606084 (-)
LOC110539128 LOC106568259 coding upstream 297092 19746311 ~ 19747504 (-)
G1046214 NA non-coding downstream 4065 19441119 ~ 19441329 (-)
G1046197 NA non-coding downstream 24992 19419802 ~ 19420402 (-)
G1046183 NA non-coding downstream 44076 19400907 ~ 19401318 (-)
G1046176 NA non-coding downstream 55460 19386995 ~ 19389934 (-)
G1046175 NA non-coding downstream 58606 19386554 ~ 19386788 (-)
G1046230 NA non-coding upstream 33783 19483002 ~ 19483307 (-)
G1046201 NA non-coding upstream 50829 19500048 ~ 19501385 (-)
G1046242 NA non-coding upstream 91133 19540352 ~ 19540622 (-)
G1046243 NA non-coding upstream 91767 19540986 ~ 19541232 (-)
LOC110537130 LOC106568157 other downstream 540288 18833119 ~ 18907377 (-)
G1045201 NA other downstream 630000 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 998143 18439759 ~ 18458056 (-)
G1044761 NA other downstream 1252171 18192234 ~ 18193223 (-)
G1044692 NA other downstream 1345672 18097563 ~ 18099722 (-)
LOC110536814 LOC106568181 other upstream 464620 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1046346 20495565 ~ 20496428 (-)
LOC110537156 LOC106568185 other upstream 1060397 20488123 ~ 20599476 (-)
G1047473 NA other upstream 1252321 20701540 ~ 20702040 (-)

Expression


Co-expression Network