LOC110537153 (LOC106568182)


Basic Information

Item Value
gene id LOC110537153
gene name LOC106568182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19941506 ~ 19978680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622971.2
ACAGTAACCGATACACGTCCCTGCTGGAGATGATGACTAAAACGAATAGCCTACGTAGACTACAAACAAGAGGAGAGCGCGTGCCACTAACTTCCTCACAATTTCTCAAACTCTCAGAGAGCATAGAGGGGTATAATATATCGAAACAACAGTGTGGTGATATCGAGAAATTATTGTATAACCTAGATACATTATTTTATCGAAGTCATCGTCACCTTGCCGTTTCCAGTTTCCAGTTCCACCTTGTCAATCTACTGCGCGCGAATTCACAGAAGATAGTTTAAGTGAATACTTTTCAGGTTACTTTGTCTCAGGACCAAGTATGCAGGTGTTGGGCCAGCAGGCTGGTGCTAACCTCTGGGTCACCAGTAGTCCCATGGTGGTCCAGAGCCTGGGTCCAGTATCTCCTGTCACGAGTCAGTCCTACACCTCTGTGCCTCTGGTAACACACCCCCAACCCCCACAAGGCCTGGTGGTACCGTACACAGATACCAGGTCCTTGTTCTCCAGAGACTCCCTGGCATCCACCACCCTGAGCCTAGCAGAGACCCACTCAGTTCTGAGTGGCAGACAGGAGTGGCCCTATGGCTACCGGGTCCTTCCTCCACTCTGCCCACAACAGGGTTCCACCCAGGTCAGCAAGGGGGGTGAGCTGCTCAGCCTGCCCCCTGGCACTGCTATGTCTGGGGGCACCAGCATCTCCAACTCTGCCTCCCTGCCCTCCTACCTGTTTGGGGGAGATGCCAACAGCCCCCGGCAGTACTCAGCCCACTCCAAAAAGAgggccctctccatctcacctctgtCAGACGGCTATGGCCTTGACTTCAACTCCATCATCCGTACCTCGCCCACCTCGCTGGTGGCTTACATCAATGGCTCCCGGAGCTCTCCAACCTCCCACCACACCCTTTCACCCCTCCAGCCTGAGGTCTATGGCCACTTCCTGGGGGTGAGAGGGAGCTGTATCCCCTATTCTCAGACTCCAGGCCTCCTCAGCCTCACACCCTCCACGCTCGCTCTGACCCCACTGAGTGACCCCCAACCTGAATTGGAGTGTGGCCGTATGCAGAGGCTGGAGCAGGGCAGGACGCTGGAGAGCCAGATGGCTAACATGGTGGTGGAGCAGCAGTGTCTCCCAGAGGAGGGAAGAACACCACAGAGGGCTGCCAGTAACACTAATGACCTGGTGCCATCTCTACACTTTCAGCTTGAGTTGGCCACCATCATCAGATCAGATAGTCCACCGCAGGGCCCCCCACCTCCTTACCACTCTCACTACCAGCACCGCCATCTCCAAAGACCTCCTAGCCACATCCAGGGTCAGCCCAAGTCCCAGGGCCCTGTCTCTCAGCCCCCCCCAGCTCCCCCTGGGCATGGGACCAGCCTCGTGCCCCATCCCCTGTCCCTCTTCCCCATGCTGGAGGAGGGGGAGCTGGAGGACTACAGTGGGGGGCACTGCTGCCGCTGGGTGGGCTGCAGTGCTGTGTATAACCAAAAGGAGGAGCTGGTTAGGCACATAGAGAAGCGCCATGTGGACCAGCGGAAGGGCGAAGACTTCACCTGCTTCTGGGCGGTGTGTCCACGCAGGTTCAAGCCGTTCAATGCCCGCTACAAACTCCTCATCCACATGAGAGTCCACTCTGGAGAGAAGCCCAACAAGTGCACGGGGGTTCCCTTCCCGACTGTCTCTCCTGTCTACTGTGAGTCAACCAGCCAGGGAAATAGACATCTTGAATTTGAGGGCTGTCAGAAGGCTTTCTCTCGGCTGGAGAACATGAAGATCCACCTGCGCagccacactggagagaagccttatataTGCCAGTACCCCAGCTGCCACAAAGCCTTCAGCAACTCCAGTGACAGAGCCAAGCATCAGCGCACACACCTGGACACGaaGCCGTACGCGTGTCAGATCCCTGGTTGTGTAAAGCGCTACACTGACCCAAGCTCCCTGCGCAAGCACATCAAATCCCATTCCTCCAAAGAGAGGCAGTTGAGGAAGAAGCTGAGGTCATCTATTGACATGAGCCAAGAGGCATTAACGGACTGTCTAACCATCCAACCCCTGCtacccagcctctctcctctGGACATGATTAACAGCAAGCTGGGCCAATCACCAATACCTTCCCTAGATCTCTACACAGATCTGCTGACCAGTGGGCAGTCTAGCCACTGTGTGTCTCTATCCATCCCTTTCCCTCGAGCTGTTCCACAGGGCCAACCCTCCTCAAACAGCTCACACCTGGCTCTGCTGCGCCCCCAGCAGGACAGTTATAGGTTTGTTGATAGGTCCACCCACCAACTCAACCCTGGGTCCCACCAACACCAACTGCCTGGCCCCTCCAGTCCTCACACTCACCATCCTACTGTCTTATCCCTAAAGACCAGCACACCCCTGAATCATCCCAGTCACACTCCTGTAGTAAACACAGACCAACACCCAGGTTTTAGTGGTCAGATCCAGATGGTGTACTCTCCATTATACAATAATGGTACACATAAATACACCAAGCAGACAAACTCCTGTCACCTGATGGAGATCCCAGAGTTTGATGATAGCCTTTCTCAAACATTCCCAACTCAGAACAGACTAGACATCTCCCAAAGAGCTCTGTCTGGGCTCACAGTATATGACCTGCAGGGTGCATCACAGGATCTGCTTGTTAACCCAGTGCCAGTGATGTCAGAGGATGCTTATTTACATGTCAGTGCAGTGGACCGTTGCCCTAGCCAGCTCTCCTGTATCTACACTGAGGAGTGACGTCAGCAAATCTACCTCTTTTCTAAAACAGATACTCTGTAATACAACTCGTGCAACAACTATATTGTTCTTCAGCAACATGTTCCTTGACATTGACCTGAGTGTGATGCCCATCTTGGGTGAGAACTGTAGACAAAAGGGGACATTTAGTAGCTTTAATTAAATTGGCAAAATGAACATGTCCACATCACTTATTAACTGATATTAGTCAATGAACATTGTTTTCATCATGGCAAGTCATGATAATTCTGACATCTTAGATGCTGTCTTCATTCAAGTCAGTATCATCAGATCTCAGAGTCTAAGCCCACAATGAAAGTGCCTCCTAAAGATTGTATATTGAGATTTAGAGGATGTTTTTATGtttatgttctgaaagagctgcaaaacctggacccgtgcaaatcagctgggcttgacaatctggaccctctattcctgaaactatccgccgccattgtcgcaacccctattacc
>XM_021622972.2
ACAGTAACCGATACACGTCCCTGCTGGAGATGATGACTAAAACGAATAGCCTACGTAGACTACAAACAAGAGGAGAGCGCGTGCCACTAACTTCCTCACAATTTCTCAAACTCTCAGAGAGCATAGAGGGGTATAATATATCGAAACAACAGTGTGGTGATATCGAGAAATTATTGTATAACCTAGATACATTATTTTATCGAAGTCATCGTCACCTTGCCGTTTCCAGTTTCCAGTTCCACCTTGTCAATCTACTGCGCGCGAATTCACAGAAGATAGTTTAAGTGAATACTTTTCAGGTTACTTTGTCTCAGGACCAAGTATGCAGGTGTTGGGCCAGCAGGCTGGTGCTAACCTCTGGGTCACCAGTAGTCCCATGGTGGTCCAGAGCCTGGGTCCAGTATCTCCTGTCACGAGTCAGTCCTACACCTCTGTGCCTCTGGTAACACACCCCCAACCCCCACAAGGCCTGGTGGTACCGTACACAGATACCAGGTCCTTGTTCTCCAGAGACTCCCTGGCATCCACCACCCTGAGCCTAGCAGAGACCCACTCAGTTCTGAGTGGCAGACAGGAGTGGCCCTATGGCTACCGGGTCCTTCCTCCACTCTGCCCACAACAGGGTTCCACCCAGGTCAGCAAGGGGGGTGAGCTGCTCAGCCTGCCCCCTGGCACTGCTATGTCTGGGGGCACCAGCATCTCCAACTCTGCCTCCCTGCCCTCCTACCTGTTTGGGGGAGATGCCAACAGCCCCCGGCAGTACTCAGCCCACTCCAAAAAGAgggccctctccatctcacctctgtCAGACGGCTATGGCCTTGACTTCAACTCCATCATCCGTACCTCGCCCACCTCGCTGGTGGCTTACATCAATGGCTCCCGGAGCTCTCCAACCTCCCACCACACCCTTTCACCCCTCCAGCCTGAGGTCTATGGCCACTTCCTGGGGGTGAGAGGGAGCTGTATCCCCTATTCTCAGACTCCAGGCCTCCTCAGCCTCACACCCTCCACGCTCGCTCTGACCCCACTGAGTGACCCCCAACCTGAATTGGAGTGTGGCCGTATGCAGAGGCTGGAGCAGGGCAGGACGCTGGAGAGCCAGATGGCTAACATGGTGGTGGAGCAGCAGTGTCTCCCAGAGGAGGGAAGAACACCACAGAGGGCTGCCAGTAACACTAATGACCTGGTGCCATCTCTACACTTTCAGCTTGAGTTGGCCACCATCATCAGATCAGATAGTCCACCGCAGGGCCCCCCACCTCCTTACCACTCTCACTACCAGCACCGCCATCTCCAAAGACCTCCTAGCCACATCCAGGGTCAGCCCAAGTCCCAGGGCCCTGTCTCTCAGCCCCCCCCAGCTCCCCCTGGGCATGGGACCAGCCTCGTGCCCCATCCCCTGTCCCTCTTCCCCATGCTGGAGGAGGGGGAGCTGGAGGACTACAGTGGGGGGCACTGCTGCCGCTGGGTGGGCTGCAGTGCTGTGTATAACCAAAAGGAGGAGCTGGTTAGGCACATAGAGAAGCGCCATGTGGACCAGCGGAAGGGCGAAGACTTCACCTGCTTCTGGGCGGTGTGTCCACGCAGGTTCAAGCCGTTCAATGCCCGCTACAAACTCCTCATCCACATGAGAGTCCACTCTGGAGAGAAGCCCAACAAGTGCACGTTTGAGGGCTGTCAGAAGGCTTTCTCTCGGCTGGAGAACATGAAGATCCACCTGCGCagccacactggagagaagccttatataTGCCAGTACCCCAGCTGCCACAAAGCCTTCAGCAACTCCAGTGACAGAGCCAAGCATCAGCGCACACACCTGGACACGaaGCCGTACGCGTGTCAGATCCCTGGTTGTGTAAAGCGCTACACTGACCCAAGCTCCCTGCGCAAGCACATCAAATCCCATTCCTCCAAAGAGAGGCAGTTGAGGAAGAAGCTGAGGTCATCTATTGACATGAGCCAAGAGGCATTAACGGACTGTCTAACCATCCAACCCCTGCtacccagcctctctcctctGGACATGATTAACAGCAAGCTGGGCCAATCACCAATACCTTCCCTAGATCTCTACACAGATCTGCTGACCAGTGGGCAGTCTAGCCACTGTGTGTCTCTATCCATCCCTTTCCCTCGAGCTGTTCCACAGGGCCAACCCTCCTCAAACAGCTCACACCTGGCTCTGCTGCGCCCCCAGCAGGACAGTTATAGGTTTGTTGATAGGTCCACCCACCAACTCAACCCTGGGTCCCACCAACACCAACTGCCTGGCCCCTCCAGTCCTCACACTCACCATCCTACTGTCTTATCCCTAAAGACCAGCACACCCCTGAATCATCCCAGTCACACTCCTGTAGTAAACACAGACCAACACCCAGGTTTTAGTGGTCAGATCCAGATGGTGTACTCTCCATTATACAATAATGGTACACATAAATACACCAAGCAGACAAACTCCTGTCACCTGATGGAGATCCCAGAGTTTGATGATAGCCTTTCTCAAACATTCCCAACTCAGAACAGACTAGACATCTCCCAAAGAGCTCTGTCTGGGCTCACAGTATATGACCTGCAGGGTGCATCACAGGATCTGCTTGTTAACCCAGTGCCAGTGATGTCAGAGGATGCTTATTTACATGTCAGTGCAGTGGACCGTTGCCCTAGCCAGCTCTCCTGTATCTACACTGAGGAGTGACGTCAGCAAATCTACCTCTTTTCTAAAACAGATACTCTGTAATACAACTCGTGCAACAACTATATTGTTCTTCAGCAACATGTTCCTTGACATTGACCTGAGTGTGATGCCCATCTTGGGTGAGAACTGTAGACAAAAGGGGACATTTAGTAGCTTTAATTAAATTGGCAAAATGAACATGTCCACATCACTTATTAACTGATATTAGTCAATGAACATTGTTTTCATCATGGCAAGTCATGATAATTCTGACATCTTAGATGCTGTCTTCATTCAAGTCAGTATCATCAGATCTCAGAGTCTAAGCCCACAATGAAAGTGCCTCCTAAAGATTGTATATTGAGATTTAGAGGATGTTTTTATGtttatgttctgaaagagctgcaaaacctggacccgtgcaaatcagctgggcttgacaatctggaccctctattcctgaaactatccgccgccattgtcgcaacccctattacc

Function

NR:

description
zinc finger protein GLIS3-like isoform X2

GO: NA

KEGG:

id description
K09232 GLIS1_3; zinc finger protein GLIS1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622971.2 False 3247 mRNA 0.52 11 19941506 19978680
XM_021622972.2 True 3178 mRNA 0.52 10 19941506 19978680

Neighbor

gene id symbol gene type direction distance location
LOC110536814 LOC106568181 coding downstream 2922 19893417 ~ 19938584 (-)
LOC110539128 LOC106568259 coding downstream 194002 19746311 ~ 19747504 (-)
LOC110537146 LOC106568171 coding downstream 335422 19580903 ~ 19606084 (-)
LOC118937638 NA coding downstream 361272 19578405 ~ 19580234 (-)
LOC110537144 LOC106568168 coding downstream 372048 19550953 ~ 19569458 (-)
LOC110536815 LOC106568184 coding upstream 395655 20374335 ~ 20487549 (-)
LOC110537156 LOC106568185 coding upstream 509443 20488123 ~ 20599476 (-)
LOC110537157 LOC101448024 coding upstream 629293 20607973 ~ 20638681 (-)
LOC110537159 LOC106568248 coding upstream 811175 20789855 ~ 20797912 (-)
gltp LOC106568188 coding upstream 876146 20854826 ~ 20857785 (-)
G1046574 NA non-coding downstream 30401 19910833 ~ 19911105 (-)
G1046560 NA non-coding downstream 48570 19892697 ~ 19892936 (-)
G1046559 NA non-coding downstream 49640 19891052 ~ 19891866 (-)
G1046558 LOC107575789 non-coding downstream 50991 19890280 ~ 19890515 (-)
G1046615 NA non-coding upstream 15676 19994356 ~ 19994583 (-)
G1046630 NA non-coding upstream 32140 20010820 ~ 20011105 (-)
G1047041 NA non-coding upstream 83834 20062514 ~ 20086968 (-)
G1047175 NA non-coding upstream 280181 20258861 ~ 20259396 (-)
G1047188 NA non-coding upstream 391470 20370150 ~ 20373667 (-)
LOC110537130 LOC106568157 other downstream 1036400 18833119 ~ 18907377 (-)
G1045201 NA other downstream 1126112 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 1494255 18439759 ~ 18458056 (-)
G1047325 NA other upstream 516885 20495565 ~ 20496428 (-)
G1047473 NA other upstream 722860 20701540 ~ 20702040 (-)
LOC110537162 LOC106568189 other upstream 883912 20862558 ~ 20888980 (-)
LOC110537166 srsf9 other upstream 955281 20933954 ~ 20938307 (-)

Expression


Co-expression Network