LOC110537157 (LOC101448024)


Basic Information

Item Value
gene id LOC110537157
gene name LOC101448024
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20607973 ~ 20638681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939493.1
AGGCTGAGGTGAGAGGAAAAGCAGGGCAGTTGATTCCTGTAGCTTTGGGTGATTATCATCAGAGCATTTGAACAAACGTCAGGCTCCTCCTAACCCagggattagagagagagagagagagagagagagagagagagagagagagaggctggggtcTAGAACCTCATATACACATTTAAACCTTCAGCCTGTCTGCGTTTTCCAACACTTCCTATACATGCTGCACAGCCAAAGTCAATCTCCACCAGTCCATACTAACAGAGtcaacaggaggaggagggcaccACTGGAGCAACAGacaTGTCAGGCATGGACAACATGGACCGAGGTTTTTTCCGGAAGGTAGACGTGCCAGACCAAGCTCATTACATCGTGGCCTGCTTCGTTGTGGTGATCGGAGCAGTGGGGGTCGGTGGGAATGCCCTGGTGATGTACGCCTTCTTCAGTAACAAGAAGCTCCGGACTCCTCCCAACTATTTCATCATGAATCTGGCAGTGAGTGACTTCCTCATGGCCATCACACAGTCCCCTATCTTCTTTGTCAACTGTCTCTACAAGGAGTGGGTTTTTGGAGAAACAGGCTGTAAGATGTACGCCTTCTGTGGGGCCTTATTTGGGATCACCTCCATGATCAACCTGTTGGCTATCTCCATTGACCGCTACATCGTCATCACCAAGCCCCTACAGGCCCTCCACTGGACCTCTAAACGCCGCACCTCCGTTGTCATCGTCATTGTCTGGCTCTACTCGCTGGCCTGGAGCCTGGCGCCTCTCTTTGGCTGGAGTTCTTATATCCCTGAGGGCCTGATGACCTCCTGTACGTGGGATTATGTGACCTCCACACCAGCCAATAGGAGTTATACTCTCATGCTATGCATCTTTGTGTTCTTCATCCCACTGGGCATCATCTCCTACTGCTACCTCTGCATGTTCCTGGCCATACGCACTGCCAGTAGAGACATGGAGAAACTGGGCAGTCAGGTGAGGAAGTCCACCCTCATCCAGCAGCAGTCCATCAAGACAGAGTGGAAGCTGGCCAAGATCGCCTTTGTGGTCATCATCGTCTATGTGATGTCCTGGTCTCCCTACGCCAGCGTCACCCTCATCGCCTGGGCTGGCTATGGACGTGCCCTCAGCCCCTACTCCAAGGCCGTCCCTGCTGTCATTGCCAAAGCCTCAGCCATCTATAACCCTTTCATCTATGCCATCATCCACTCTAAGTACAGAGACACTCTGGCAGAGAAAGTTCCCTGTCTGCACTTTCTGGCCCAACCCCTCAGGAAGGGCTGTATCTCTATGTCCAACAGCGAGTCCTCCTTCAGGGACCCTATGCTCAGCAGACAGTCCTCCACCTCCAAGACCAAGTTTCATAAAGTGTCCTCCATGTCCACCGGAGACACACAGGTGTGGAGTGACGTGGAGCTGGACCCCTACGACCAGCAGAGCCAGTCTCTGAGAATCAGCCACTCCTCTGGAGCTCTGAGAGTGAAGGAGTGTAGACAGTCAGCCCAGCAGCAGGCAGAAAAAGGTAAGGCTGCTGTCCTCAAGAGCAGCTGTGACCACGACCTAGTGTCTGAATCTGTGACCAGGGAGGAGGCTGGGGAGGGgtggcaggaggaggagaagacccAGGAGATAGCCCCCCCAGTCAGctcaggaggaggtggaggagccaCCCCCCTGCCGCCCCACCACCAGCCTCCTCACCCCCCAGGTCCCCCAGCACCctga

Function

NR:

description
melanopsin-B-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939493.1 True 1731 mRNA 0.54 10 20607973 20638681

Neighbor

gene id symbol gene type direction distance location
LOC110537156 LOC106568185 coding downstream 8497 20488123 ~ 20599476 (-)
LOC110536815 LOC106568184 coding downstream 120424 20374335 ~ 20487549 (-)
LOC110537153 LOC106568182 coding downstream 629293 19941506 ~ 19978680 (-)
LOC110536814 LOC106568181 coding downstream 669389 19893417 ~ 19938584 (-)
LOC110539128 LOC106568259 coding downstream 860469 19746311 ~ 19747504 (-)
LOC110537159 LOC106568248 coding upstream 151174 20789855 ~ 20797912 (-)
gltp LOC106568188 coding upstream 216145 20854826 ~ 20857785 (-)
LOC110537162 LOC106568189 coding upstream 223877 20862558 ~ 20888980 (-)
LOC118937642 NA coding upstream 272013 20910694 ~ 20912332 (-)
LOC110537166 srsf9 coding upstream 295273 20933954 ~ 20938307 (-)
G1047344 NA non-coding downstream 45973 20561218 ~ 20562000 (-)
G1047343 NA non-coding downstream 51720 20555864 ~ 20556253 (-)
G1047327 NA non-coding downstream 96207 20510715 ~ 20511766 (-)
G1047308 NA non-coding downstream 138383 20468708 ~ 20469590 (-)
G1047305 NA non-coding downstream 143067 20464687 ~ 20464906 (-)
G1047376 NA non-coding upstream 10276 20648957 ~ 20649290 (-)
G1047387 NA non-coding upstream 21709 20660390 ~ 20660606 (-)
G1047410 NA non-coding upstream 28803 20667484 ~ 20668882 (-)
G1047411 NA non-coding upstream 31969 20670650 ~ 20670849 (-)
G1047412 NA non-coding upstream 32268 20670949 ~ 20671173 (-)
G1047325 NA other downstream 111545 20495565 ~ 20496428 (-)
LOC110537144 LOC106568168 other downstream 1049304 19550953 ~ 19569458 (-)
LOC110537130 LOC106568157 other downstream 1702867 18833119 ~ 18907377 (-)
G1047473 NA other upstream 62859 20701540 ~ 20702040 (-)
G1048931 NA other upstream 1146510 21785191 ~ 21785557 (-)
G1048983 NA other upstream 1250857 21889538 ~ 21889869 (-)

Expression


Co-expression Network