LOC110537160 (LOC106564165)


Basic Information

Item Value
gene id LOC110537160
gene name LOC106564165
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20804025 ~ 20846262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622983.2
ATTTATCTCATGCATTTCGACATATTTCAGTTCGGTCGGCTGTGGGGAGAAGAATACATGAGAGGAACATTGGAATGAATACACCTACAAACGATTTCATTTTCAATATCAAGACATTTGCCATTTCGAGTAATACTTTTTAAAAGTGGTTCTCATGGATATTTTCAAACCGATAATTCTCAGTCTCATCGGACTTCAGCGACGTCTCTTTGGCAAAGGAAATACGCCTTCTGAGCAGGGGAGCAAGCATCGAGCCGTGGCGAGCCAAATATAAACAAGCCTTATGATAACACTGAACGCTGTTCCCCCGAGGTCCAAGCGGCTGTAGAACCCCCAGAAAGCTGCAGCCATGTTAGCCTGCCTACAGAGACGGCAGCAGAACCTCTCATCTCAGCACCTGGTCTGCACCCCCAAGATCCTGGATGCTCCCCCACAGCAGCCGCAGCCCAGCACACGACAAAGTGAGCTGTCCTCCATGAATGGCCCTCGGTATCCTTCCCCTGCAGAGCTGGATGCCTTTGCCCAGAAGACGGCCAGCAGCCCCCTGTCCATCAAGATCTTCCCATCCAACATCAGAGTGCCGCAGCACAAACAGCTGAACAGGACGGTCAACGGCCTGGACACCACATGCACCCAGCACTACAGTCCCTACTCAGGAGGCTACCAGGGCCTACTGGGTGTTGTAAAGGCCACCGTCTCCGTAGTCAAAGGCGTGCTGAAAAACTCTGAGGGCAAGAGGACTAAACATTCCCCCGCCCAAACTGCAGCGGCACCATACAACCCTCTCAGTAACAACAGACACGGGCAGCAGAAGAGCTACCACATGGGCTCCTGCAAGCCTCCTGATGGGTCCAAAATGGCTGTTCCCTCTAATATCATTGTTGCTGCCTCTGTCATCCCCACCCCAGTAGGACAGACTCTGGCCTCTCAGTCGGACCTGGACGTCCAGAGCCTGCTGAGGCAGATGAACAGACACTCCCACAGCCAGGCCCTGCAGCACGGGGGAGAGGCCCAGCCAAGCCCCTCACGCCAGGCTGTGGCTGCTGTGGCCTGCTCAGACTCTGGCTTTACCTGGGGAGTGGTGCCCCAGAGCAGCCTAGCGTATTCCGGGGCTGTGCTGCCCACCCAGAGCGCAGACATGGCCCAGGCTGGCTACTTGGAGAGAGTGGACTATAGCATGTGGCAGCACCACCAACAGCAGCAGCACTACCAACAGGGGGCACTAAGGATGTACAACAATGCTCGGATGGGCAGCGGGGGAGGGGCCGTGGTCAGCCGCTCTCCAGAGACCTGTCTCCCTTTGGCCTGCTCAGCACAGCTCTCCTATAGGCGCCATCCCCTCAGTGCAGGCACTAACGGGGCAGGGATTGGGCAGGACCGGGTTATCTCCTCCCCTCTGAACTGTGCTGCTATGCATGGGGAGTTCTCTGTGGGCCAGTACTTCGCCCCTCCCTGGAACAGTGTTCTGGTCACTCCGGACAGCGACTGTTACAACCCTCAGGAGCTGGTGCCTGGTTCCTCTATGGGCCGGGCCAGAGACTTGGGGCTCTCCCAACCCCACCCTCACCCAAACCATCACCCCAACCACCAgctccacccccaccaccatcctCACCACCAGGTCTACGCCACAGACCAGAGCTTGGGCCTCTGTTGTGGGCTGCCCAGCACCAGCTTGTGCCACGCTTCTGTGCTGAGCAGCAGCCTGCAGTCTCTGGAGTGCCTGATCAGTGATCTCCACCCGCCCTGCATCAAGGAGAGCATGCTGGGGCGGGGCTACGAGGCGGTAGGGATGCCAAGGCTACTAGACCACAACCTACAGCACACCCACGTCCAGCTGCCTGTGTTCAGATAAGACAGGATGTGTCCACACAGGGCACTCGTACTGAAATATTCTGTAAAACAGGAACTCCATGGATGCAGGTGTATAATTTTGAAGAGACCACCTCAGAATGAGAAACGTACGGCACCTTTTTATTTTGCGTGTGTGTTGTATTGGTACAGGGCTATGTGGTTTGGAATTGACCAAGTGTTGTAAACCTTAAAAGGGTAATGATAATCATGACTGACCTGCAGGGTCATCTTATTTGATGTCTTAATGTTTTCATTTACGGAGGATTTGTTGATCAATCAGAGAATCAGTTCACATCTGCCACATTTGTTCCTCAGAATAATGTGTTTTGAAGCTTGTTTTTTTCTCCATCTGTCCACTGTTGAATTTTTAAACCATTTCAGAATGTTGTAATTTGAAGTAACGTGAAAAAGGTGATGCGCAGGCAATCCTCCTAATGCCCTTTTACAAAGTGCAAAAAAAATACAACTGAAAAATGGTACATACTTAGGGCATACAAGGGCCAAACTCCAGGCCTCCAGGGGCATACAAAGGCCCAACTCCAGGCCTCCAGACTGTCTTAACCCTTACACTTAATTGACCAATAAAGGCCACTGATTATAATGCACTGCTGTAAGAACGGCAAAAATGGGTCGATTTAGACATGGGGAAATGTGTCAGGGAACcgttttttattttcaaaataaACTTTATCTtgaatgtttttgtatttttgttaGGTTGTGCCTATGTTGGCTGCTAATGGAGGATAATGTCTTGATATAATGATTGACCtttatgtttttgttgtcttCTCTACTATTATGACTGTCTGTTACCACGCTGTTGCTAGGCCCCATGTCACAAGCAAGAGATCTGCTAGCCATCACGTTAATGTTTGATGGAATGACAGAGTTATCATATTTGACCTAAAACTGGGAACTGGGACTGGGCACTGGGACTTTGGGGACGGGATGTGTCATTTGATTCTCTGATTTGTTCACATTTTGCTCTTAGCTTTGGTTGACATTCATCATTTAGGTCATCAATCACAAAAATACTACTTTAATCAACAGGAGTCCCTCCAATAGTTTTCCGGAGACAGGAGAAATGTGTTTTCAAACTGAAGGCATGACTATCAAATTGAAGTATTCCATGGTAGATCATTGGTTTACAAATGAGTCGAGTTTACTGGAGAGGTGTCCCCTACTGATCACTGGAGAAcaggtatttcttacagtatAATTCACTGCTTTTCTGTCAATGTTTTCTTTCTGAAAATAAGATGTAGTTTCTTTGTAGTGGTCTATCTGATGCCTGAGAAGTATGGCTATATAAAGAATCTCTTTATATGTCTGCACTGTCAAATGACTGTTTATTTttttcaaccagtcagtcaggatTCTGTTGGTTGACAATGTACATAAATGACTCAATGATTATGAAGTGCAATTACAATATTTAACAGGTATTTAACTCTACAAACATGTTGAAATGACTACATTTACATGAGTACATGCATAACCCTAGACTCCCATACCCATTCTCCTATTCTTAATTAAGATtgtcaaataaatatttttttccttctAA
>XM_021622984.2
ATTTATCTCATGCATTTCGACATATTTCAGTTCGGTCGGCTGTGGGGAGAAGAATACATGAGAGGAACATTGGAATGAATACACCTACAAACGATTTCATTTTCAATATCAAGACATTTGCCATTTCGAGTAATACTTTTTAAAAGTGGTTCTCATGGATATTTTCAAACCGATAATTCTCAGTCTCATCGGACTTCAGCGACGTCTCTTTGGCAAAGGAAATACGCCTTCTGAGCAGGGGAGCAAGCATCGAGCCGTGGCGAGCCAAATATAAACAAGCCTTATGATAACACTGAACGCTGTATGTTCCCCCGAGGTCCAAGCGGCTGTAGAACCCCCAGAAAGCTGCAGCCATGTTAGCCTGCCTACAGAGACGGCAGCAGAACCTCTCATCTCAGCACCTGGTCTGCACCCCCAAGATCCTGGATGCTCCCCCACAGCAGCCGCAGCCCAGCACACGACAAAGTGAGCTGTCCTCCATGAATGGCCCTCGGTATCCTTCCCCTGCAGAGCTGGATGCCTTTGCCCAGAAGACGGCCAGCAGCCCCCTGTCCATCAAGATCTTCCCATCCAACATCAGAGTGCCGCAGCACAAACAGCTGAACAGGACGGTCAACGGCCTGGACACCACATGCACCCAGCACTACAGTCCCTACTCAGGAGGCTACCAGGGCCTACTGGGTGTTGTAAAGGCCACCGTCTCCGTAGTCAAAGGCGTGCTGAAAAACTCTGAGGGCAAGAGGACTAAACATTCCCCCGCCCAAACTGCAGCGGCACCATACAACCCTCTCAGTAACAACAGACACGGGCAGCAGAAGAGCTACCACATGGGCTCCTGCAAGCCTCCTGATGGGTCCAAAATGGCTGTTCCCTCTAATATCATTGTTGCTGCCTCTGTCATCCCCACCCCAGTAGGACAGACTCTGGCCTCTCAGTCGGACCTGGACGTCCAGAGCCTGCTGAGGCAGATGAACAGACACTCCCACAGCCAGGCCCTGCAGCACGGGGGAGAGGCCCAGCCAAGCCCCTCACGCCAGGCTGTGGCTGCTGTGGCCTGCTCAGACTCTGGCTTTACCTGGGGAGTGGTGCCCCAGAGCAGCCTAGCGTATTCCGGGGCTGTGCTGCCCACCCAGAGCGCAGACATGGCCCAGGCTGGCTACTTGGAGAGAGTGGACTATAGCATGTGGCAGCACCACCAACAGCAGCAGCACTACCAACAGGGGGCACTAAGGATGTACAACAATGCTCGGATGGGCAGCGGGGGAGGGGCCGTGGTCAGCCGCTCTCCAGAGACCTGTCTCCCTTTGGCCTGCTCAGCACAGCTCTCCTATAGGCGCCATCCCCTCAGTGCAGGCACTAACGGGGCAGGGATTGGGCAGGACCGGGTTATCTCCTCCCCTCTGAACTGTGCTGCTATGCATGGGGAGTTCTCTGTGGGCCAGTACTTCGCCCCTCCCTGGAACAGTGTTCTGGTCACTCCGGACAGCGACTGTTACAACCCTCAGGAGCTGGTGCCTGGTTCCTCTATGGGCCGGGCCAGAGACTTGGGGCTCTCCCAACCCCACCCTCACCCAAACCATCACCCCAACCACCAgctccacccccaccaccatcctCACCACCAGGTCTACGCCACAGACCAGAGCTTGGGCCTCTGTTGTGGGCTGCCCAGCACCAGCTTGTGCCACGCTTCTGTGCTGAGCAGCAGCCTGCAGTCTCTGGAGTGCCTGATCAGTGATCTCCACCCGCCCTGCATCAAGGAGAGCATGCTGGGGCGGGGCTACGAGGCGGTAGGGATGCCAAGGCTACTAGACCACAACCTACAGCACACCCACGTCCAGCTGCCTGTGTTCAGATAAGACAGGATGTGTCCACACAGGGCACTCGTACTGAAATATTCTGTAAAACAGGAACTCCATGGATGCAGGTGTATAATTTTGAAGAGACCACCTCAGAATGAGAAACGTACGGCACCTTTTTATTTTGCGTGTGTGTTGTATTGGTACAGGGCTATGTGGTTTGGAATTGACCAAGTGTTGTAAACCTTAAAAGGGTAATGATAATCATGACTGACCTGCAGGGTCATCTTATTTGATGTCTTAATGTTTTCATTTACGGAGGATTTGTTGATCAATCAGAGAATCAGTTCACATCTGCCACATTTGTTCCTCAGAATAATGTGTTTTGAAGCTTGTTTTTTTCTCCATCTGTCCACTGTTGAATTTTTAAACCATTTCAGAATGTTGTAATTTGAAGTAACGTGAAAAAGGTGATGCGCAGGCAATCCTCCTAATGCCCTTTTACAAAGTGCAAAAAAAATACAACTGAAAAATGGTACATACTTAGGGCATACAAGGGCCAAACTCCAGGCCTCCAGGGGCATACAAAGGCCCAACTCCAGGCCTCCAGACTGTCTTAACCCTTACACTTAATTGACCAATAAAGGCCACTGATTATAATGCACTGCTGTAAGAACGGCAAAAATGGGTCGATTTAGACATGGGGAAATGTGTCAGGGAACcgttttttattttcaaaataaACTTTATCTtgaatgtttttgtatttttgttaGGTTGTGCCTATGTTGGCTGCTAATGGAGGATAATGTCTTGATATAATGATTGACCtttatgtttttgttgtcttCTCTACTATTATGACTGTCTGTTACCACGCTGTTGCTAGGCCCCATGTCACAAGCAAGAGATCTGCTAGCCATCACGTTAATGTTTGATGGAATGACAGAGTTATCATATTTGACCTAAAACTGGGAACTGGGACTGGGCACTGGGACTTTGGGGACGGGATGTGTCATTTGATTCTCTGATTTGTTCACATTTTGCTCTTAGCTTTGGTTGACATTCATCATTTAGGTCATCAATCACAAAAATACTACTTTAATCAACAGGAGTCCCTCCAATAGTTTTCCGGAGACAGGAGAAATGTGTTTTCAAACTGAAGGCATGACTATCAAATTGAAGTATTCCATGGTAGATCATTGGTTTACAAATGAGTCGAGTTTACTGGAGAGGTGTCCCCTACTGATCACTGGAGAAcaggtatttcttacagtatAATTCACTGCTTTTCTGTCAATGTTTTCTTTCTGAAAATAAGATGTAGTTTCTTTGTAGTGGTCTATCTGATGCCTGAGAAGTATGGCTATATAAAGAATCTCTTTATATGTCTGCACTGTCAAATGACTGTTTATTTttttcaaccagtcagtcaggatTCTGTTGGTTGACAATGTACATAAATGACTCAATGATTATGAAGTGCAATTACAATATTTAACAGGTATTTAACTCTACAAACATGTTGAAATGACTACATTTACATGAGTACATGCATAACCCTAGACTCCCATACCCATTCTCCTATTCTTAATTAAGATtgtcaaataaatatttttttccttctAA

Function

NR:

description
protein FAM222A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622983.2 False 3424 mRNA 0.48 3 20804025 20846262
XM_021622984.2 True 3428 mRNA 0.48 3 20804025 20846262

Neighbor

gene id symbol gene type direction distance location
LOC118937641 NA coding upstream 2973 20796080 ~ 20801052 (+)
LOC110537158 LOC106568186 coding upstream 110064 20667957 ~ 20694090 (+)
LOC110537154 LOC106568183 coding upstream 433482 20107346 ~ 20370543 (+)
LOC118937812 NA coding upstream 777856 20021037 ~ 20026169 (+)
LOC110537152 LOC106568180 coding upstream 911445 19872474 ~ 19892580 (+)
LOC110537163 LOC106568190 coding downstream 45726 20891988 ~ 20912792 (+)
LOC110537167 LOC106568193 coding downstream 86274 20932536 ~ 20933866 (+)
LOC110537168 LOC106568260 coding downstream 115241 20961503 ~ 20964467 (+)
LOC110537171 LOC106568197 coding downstream 442822 21289084 ~ 21298403 (+)
LOC110537175 LOC106568200 coding downstream 618285 21464547 ~ 21481116 (+)
G1047540 NA non-coding upstream 9676 20794082 ~ 20794349 (+)
G1047539 LOC106568248 non-coding upstream 10095 20793083 ~ 20793930 (+)
G1047538 NA non-coding upstream 11114 20792643 ~ 20792911 (+)
G1047535 NA non-coding upstream 13491 20789893 ~ 20790534 (+)
G1047583 NA non-coding downstream 12555 20858817 ~ 20871751 (+)
G1047744 NA non-coding downstream 135173 20981435 ~ 20981921 (+)
G1047757 NA non-coding downstream 145895 20992157 ~ 20992457 (+)
G1047763 NA non-coding downstream 150460 20996722 ~ 20996996 (+)
G1046929 NA other upstream 292506 20509269 ~ 20511519 (+)
G1046823 NA other upstream 510174 20282886 ~ 20293851 (+)
G1046724 NA other upstream 656611 20144179 ~ 20147414 (+)
G1045418 NA other upstream 1838083 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 986832 21833094 ~ 21834812 (+)
G1049502 NA other downstream 1679679 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 1882668 22728930 ~ 22737666 (+)
G1051534 NA other downstream 3331168 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 4506322 25352530 ~ 25719607 (+)

Expression


Co-expression Network