LOC110537168 (LOC106568260)


Basic Information

Item Value
gene id LOC110537168
gene name LOC106568260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 20961503 ~ 20964467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623005.2
CATGTTTGATGTGTAAACATGGGGGCAGTGTCTTGTTGTTTGGAAAAAGGATGATGACACATTCACTCTCTTGGGGCTTATCAGACTCTCTTCTTTCGCTAGATGGTTTCTCTATTTCCCTGCATTATTTTATCACAGGGCCTCTCCAAGATTCACTGTGCTattaaaataatattttgttCCTACAATGTCTGTGATGGCCATGAAATACCTGTGAAGTACCTGTTCCAATCATTATAGTTGGCTTGACGTTGCAGGAATGCTTGGTTTTGGTGTGAGGAAAAGACGGTGCAAGTCAATAGCAAGAAGACTGGCTGTAGGAGTTCTATTGACCAGTTTCATGGTGATATTGCACTGCTTATCTACCCCAGCAGTCCAACAAGTCAATCAACAAAAGGTTACAGTGGCTCTGTCGTGTTCTCACCACTTATCTCAAACATGGGTCCACAATTTGACCAACTACTCTCAAAGCAGAACAAGTCTGTCAGGGGAGTGTGTGCCCACGTTGGACATCATGTTCATGAAGACCCACAAGACTGCCagcagcacattactcaacatcATCTTCCGCTTCGGTGAGAAGCACGGTTTAAAGTTTGCCTTTCCTAAAGGTCGCAATGACTTCTCCTACCCATCCCCTTTCCTTTGCTCCCATGTCAAAGACTTCCAGCCTGGGGTATGTTTCAACATCTTATGTAACCACATGCGCTTTAATGGGCATGAGGTGGCAAAGCTCCTCCCAGCAGACGCTGCCTATTTCACCATCCTACGAGACCCGGCGGAGTTGTTTGAGTCATCCTTCCATTATTACAGCCGAGCGATTCCCCTCACCTGGGGGATCCACGGAGATGGCAAACTGGCTGAGTTTCTGCGTGAACCCATGAACTACTACACCCCAGGGAGCTACAACTCATTCTACCTCAAGAACCTGCTCTTCTTTGACTTTGGATTTGATAACAACTTAGAGCCTGACCACCCTCTGGTGGAGAGGGGTATTCAGACCTTGTCCCAACGCTTCCAGCTGGTCCTGATGGCGGAGCATTTTGAGGAGTCTCTCATCCTGCTGAAAGATACACTCTGCTGGACGATGGAAGATATGCTGTTCTTCAAGCTCAATGCCCGCAAGGACTCATCTGTGTCACGACTGACCCCTGCACTAAGGGCCAAGGCCCGGGAGTGGAACGGGGCCGACTGGAGGCTCTACCAGCACTTTAATGCCACATTCTGGGCCAAGGTGGAGGCATACGGGTGGACACGGATGGAGCAGGAAGTGAAGGAGCTGAGGAGGAGGAATGCAGAAATGGCTGCCATGTGCATTGAGGGTGGGGGAGCAGTGGAGGCTGGGCTGATTCGGGACACAGATCTGCTTCCCTGGCAGCCAGTTGGAGAGAACTCCATCCTGGGTTACAATTTAAGGAAAAACATTGACCCCAAATACAGGGAACTCTGTCGGAAAATGCTCACACCTGAAATACAGTACCTATCAGAGCTAGGGGTCAACTTGTGGCTCACAAGATTATGGGGTTGGTTAAAGGATACTATATTCTAGCTAGAAACAAATTTATGGGAACAATTTGGATACATTTTTAAGAGTATAAACTGGGGCGGTGGGTGCTACTAGTATAATATATGGAATCGTTTTTttatggtcataccaaggatcatttaacTATTTGATTTTAAATTGCAGAACCCCTTTGGCCTTATtgttattagcccatagaaacacattgaatgacagattcatacatggaaaaacagataGTTAAAAATAATTCATAAGGAAGTTTGTTTTAAAGTGTTTGTCCTATGTCAATTGTGAGACTCACATGTTtggtatcaaacacgtggtttccctgtgtttgataccattctattGACTTCCTTCCAGcgattattatgagctgtcctcccctcagcagcctccactgacttcCATATATTTTTTCCAACTGCTACTGGGCTACCTTCAGACGAGTTCTGTGAGCcttgtgggcatcctagagcaaaacaacatgtacgtgtttgtgagccTCACCTTTCCAttaggggtcatattagtgtgtagcccaaactgtttggacgctacagacagaagttggcagatcggcggTACTGAATTCAGATGAGTCTCATGACgcttgtgggggtcatagagcaaaacggagaacacccccgtgttcgtgagagtctcatttTTTCCgagtggtcatattagtttgcAGTGTTTGTCTCAtgatctgacaaacactgctgtagctcggccaccttccaccgcagacgTGGAAGGCCGCCATTGGCAGATGCGGTGGATTGCAAAAAAAACGTTCTAGCTTAAACAGACGTATTTTGATGGCacatttttgtattatgctaattagctTTTTCACGGGGGCTTGGAAATCAACTGTAGGGGTGTTAAATAACTTGGGGTTGCAAATAAAGATACACTTTGTGACTGA

Function

NR:

description
PREDICTED: galactosylceramide sulfotransferase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623005.2 True 2462 mRNA 0.46 3 20961503 20964467

Neighbor

gene id symbol gene type direction distance location
LOC110537167 LOC106568193 coding upstream 27637 20932536 ~ 20933866 (+)
LOC110537163 LOC106568190 coding upstream 48711 20891988 ~ 20912792 (+)
LOC110537160 LOC106564165 coding upstream 115241 20804025 ~ 20846262 (+)
LOC118937641 NA coding upstream 160451 20796080 ~ 20801052 (+)
LOC110537158 LOC106568186 coding upstream 267542 20667957 ~ 20694090 (+)
LOC110537171 LOC106568197 coding downstream 324617 21289084 ~ 21298403 (+)
LOC110537175 LOC106568200 coding downstream 500080 21464547 ~ 21481116 (+)
LOC110536816 myhz2 coding downstream 546022 21510489 ~ 21516816 (+)
LOC110537179 LOC106568202 coding downstream 634298 21598765 ~ 21626234 (+)
foxred1 foxred1 coding downstream 663830 21628297 ~ 21643733 (+)
G1047583 NA non-coding upstream 89752 20858817 ~ 20871751 (+)
G1047565 NA non-coding upstream 134005 20827040 ~ 20827498 (+)
G1047540 NA non-coding upstream 167154 20794082 ~ 20794349 (+)
G1047744 NA non-coding downstream 16968 20981435 ~ 20981921 (+)
G1047757 NA non-coding downstream 27690 20992157 ~ 20992457 (+)
G1047763 NA non-coding downstream 32255 20996722 ~ 20996996 (+)
G1047766 NA non-coding downstream 33996 20998463 ~ 20998750 (+)
G1047776 NA non-coding downstream 42069 21006536 ~ 21006888 (+)
G1046929 NA other upstream 449984 20509269 ~ 20511519 (+)
G1046823 NA other upstream 667652 20282886 ~ 20293851 (+)
G1046724 NA other upstream 814089 20144179 ~ 20147414 (+)
G1045418 NA other upstream 1995561 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 868627 21833094 ~ 21834812 (+)
G1049502 NA other downstream 1561474 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 1764463 22728930 ~ 22737666 (+)
G1051534 NA other downstream 3212963 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 4388117 25352530 ~ 25719607 (+)

Expression


Co-expression Network