LOC110537170 (LOC106568196)


Basic Information

Item Value
gene id LOC110537170
gene name LOC106568196
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21273895 ~ 21288503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623007.2
CTTGGGTTATAAACGCTGTGCAACAACTAATTCTGGCTTTCAGGCTAGCCAGGAACGAAAAGTGGTGGATCCACGCGCCCTTAAACGCAATAAAACGAGTTTTAACGAATTTAAATACTAAAagtaaataacattttttttaaatgtcgtACAATAAAGTAGTACCAGCTCTAGTCAAGTCAAGTTATGACAACATCAAGAGAATATGCTTGTCTCACGGGAGATTTCGCTCCACGGTCGCATCCACGCAACGTGATGAGgttgaaggagggaaagagaagcaAGTTGATGAGTGCACTGTGGTGAAAGCTGTTCAAGCGGACCTCATCACCCAGTCAAAAAATACCACCGAAGCTCAAACACAGAAGATCGAAATCGACTTTGACAACACTCATGAAGCTTACAAAAGTAAAGATAACATTGAGCTGCTTAGAAGTCTGTTGGTCTTCAAGCTTTGCACATTCGACTTCCTCGTTGACAAGAACAAGGAGTTGATGGACCTTAGCAAGAAGGTATTTGGCCAGCGGTTGTTTGAGAGGCTGATGAAGATGACGTTCTATGGACAGTTTGTGGCCGGGGAGGACCACAACTCAATCAAGCCTCTGATCCATAAGAACCAGGCCTTCGGCGTGGGGTCAGTCCTGGATTACAGTGTGGAGGAAGACCTGACCCAGGAGGAGGCAGAGAAGAAGGAGATGGAAGCCTGTGTGTCTGAAGCTGAGAAAGAAAGTCCAGGCGTTGACCACCGTGAGAAGAAGTACAAGGCCCACCGTCAGTTTGGGGACCGTCGTGGGGGCGTGGTCAGTGCCAGGACATACTTCTATGCTGATGAGGCCAAGTGTGACAACCAGATGGAGACCTTCCTCAACTGCATAAAAGCCTCAGGGGGGGCCTCTGTAGATGGATTTTCTGCCATTAAGATGACTGCCCTGGGCCGTCCACAGTTCCTGCTCCAGTTCTCAGCGGTGCTGGTGAAATGGAGGAGGTTCTTCAACCTGCTGGCAGCACAGCAGGGGAAGTCTGGCATGGATGCACTGGAGCAGAAACTGGAACTGGAACAGCTGAAGGAGAGTTTGACTCAGCTGGGGGTTGGAAATAAAGATGACATTGAGAACTGGTTTACTGGAGAGAAACTGGGCCCATCAGGAACGATTGACCTTCTGGACTGGAACAGCTTGATTAATGACAGAACATCGATCTCGAACCTGCTCGTCATTCCCAATGTTGAGACTGGTCAGCTGGAGCCTCTGTTGAGAAAGTTCACTGTTGAAGAGGAGAAACAGATGAAGAGGATGCTGCAGAGAGTGGATGTTCTGGCCAAGcaTGCGGTGGATAACGGGGTGAGGCTGATGGTGGATGCTGAGCAGACGTACTTCCAGCCAGCTATCAGCAGACTGACCCTGGAGATGCAGAGGATCTTCAACAGAGAGAAGCCCATTATCTTCAACACCTACCAGTGCTATCTTAAGGAAGCCTATGACAATGTGTCTGTGGATATGGAGCTGTCCCGGCGTGAAGGTTGGTACTTTGGGGCCAAGCTGGTCCGCGGGGCCTACATGTACCAGGAGAGGAGCAGGGCGGAGGAGATCGGCTACGAAGACCCCATTAACCCAGACTACGAGGCCACCAACCGGATGTACCACAAATGTTTAGAGTTTGTGTTGGAAGAGATCAACCACAACAGGAAGGCTAATGTCATGGTGGCGTCACACAACGAGGACACTGTCAAATTCACTCTGGAGAAgaTGAACCAGATGGGTCTGTCACCCACTGAGAACAAGGTCTATTTTGGACAGCTGCTCGGAATGTGTGACCAGATCAGCTTCCCACTAGGCCAGGCTGGATTCCCAGTGTACAAATACGTCCCCTATGGCCCAGTCAACGAGGTCATCCCCTACCTGTCTCGCCGTGCCCTGGAGAACAGGGGCTTCATGAAGGGTTCCCAGAGGGAGCGCAGCCTGTTGTGGAAGGAGCTCAAACGCAGGCTGCTCAATGGACAGATCCTCTACAAGCCTGTGTACTAACTGAGCTGACTGACTCTCTGGCACACCAGCACTCTGCCCCTGTAATACATTCCAATGTCTTAACCAAACCTGCCCTGCTCACAATGGGGTGAATACTAACTTCCACTTAAGTTGAATTTTCACTTAGTCATGCTCTGATGTCAATGGGAGCCTAAAGTGAAACATTGACTGAAGTGGACATTAGGATTCAACCCCATGGCTTTagaatgtactgtaggtaggcttGTCTAGTACTAAGATACTAACCTAATACCAAAATACCCTCTGACTGGCTCTGCCTTTTCATCTATTCCTGCCAAAAGTGTCCTTATTTTATATAAGAATATATCTTATCCACTGTGGTTTAGCAGCTTATTCAGTGGCTTATTGGCCATTTTTAAAGTTGAGCTGTAGTTCTTAAGCTAGCATGGAAAGTGTGTGATTTGTTATCACTGCTTATAGAGTCATATAACTGTAGTTGTCGACAGGATTTTTCTGAATTTATTAAGGCTCCTATTTAATGTGTCCAGTGTCTTTTTGTTTCCTTTCAATGTTCAGGAACGGTATGTTTTGTAACAATGTAGTTATTTATCATTGTCTTACAGACTGCTTTGGAACCCTTGTTTGTTAGCATGTAATGTTTAAAGTTGTCCTTTGTATCTGTTTTACTGAACTGTGGATGATTGGACATTTGTAAACGCTTTGTACAGCGTTCTAGCTTTGCTGATTTTTAAAACcaatatttttattatttaaataGAAATATATAAAACTGATGTACACAAGGTTGTACTGTATGATGATATTACTGTCTTATTAAAGAaattgagtggtcatgtgataatgaa

Function

NR:

description
proline dehydrogenase 1, mitochondrial-like

GO: NA

KEGG:

id description
K00318 PRODH, fadM, putB; proline dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623007.2 True 2851 mRNA 0.46 14 21273895 21288503

Neighbor

gene id symbol gene type direction distance location
LOC110539129 NA coding downstream 44555 21227020 ~ 21229340 (-)
LOC110537169 LOC106568195 coding downstream 61738 21164599 ~ 21212157 (-)
LOC110537166 srsf9 coding downstream 335588 20933954 ~ 20938307 (-)
LOC118937642 NA coding downstream 361563 20910694 ~ 20912332 (-)
LOC110537162 LOC106568189 coding downstream 384915 20862558 ~ 20888980 (-)
LOC110537172 NA coding upstream 23431 21311912 ~ 21312861 (-)
LOC110537173 LOC106568261 coding upstream 44542 21333045 ~ 21360455 (-)
LOC118937643 NA coding upstream 157538 21446041 ~ 21465637 (-)
LOC110537176 LOC106568262 coding upstream 196328 21484831 ~ 21486628 (-)
LOC110537177 LOC106568210 coding upstream 206759 21495262 ~ 21501995 (-)
G1048018 NA non-coding downstream 61337 21130153 ~ 21212558 (-)
G1047961 NA non-coding downstream 146337 21127230 ~ 21127558 (-)
G1047896 NA non-coding downstream 219202 21053898 ~ 21054693 (-)
G1047775 NA non-coding downstream 268219 21005454 ~ 21005676 (-)
G1047768 NA non-coding downstream 275065 20998329 ~ 20998830 (-)
G1048740 NA non-coding upstream 128821 21417324 ~ 21453977 (-)
G1048776 NA non-coding upstream 205212 21493715 ~ 21493950 (-)
G1048820 NA non-coding upstream 302548 21591051 ~ 21592576 (-)
G1048818 NA non-coding upstream 310290 21598793 ~ 21599461 (-)
G1047473 NA other downstream 571855 20701540 ~ 20702040 (-)
LOC110537156 LOC106568185 other downstream 674468 20488123 ~ 20599476 (-)
G1047325 NA other downstream 777467 20495565 ~ 20496428 (-)
G1048931 NA other upstream 496688 21785191 ~ 21785557 (-)
G1048983 NA other upstream 601035 21889538 ~ 21889869 (-)
G1049013 LOC106568226 other upstream 642680 21931183 ~ 21931785 (-)
G1048996 NA other upstream 648828 21937331 ~ 21938200 (-)
G1048995 NA other upstream 649943 21938446 ~ 21942996 (-)

Expression


Co-expression Network