LOC110537176 (LOC106568262)


Basic Information

Item Value
gene id LOC110537176
gene name LOC106568262
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21484831 ~ 21486628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623013.2
CTAGTTTGTGTCTGACACTTGGCCTATGTCACTGTATGAGAGATGAGTGGTCATGTAAAGAATATGTATCCTCAGCTGTCCATATCACAAGCAGCAAGTACATTGCTCTCCCTGTTACTGGTGGCTGCCATTGATTCAATGAATGCTGGAATAGCATGTAGAAACCAACAATGTGAGAGTCACATACAAAGAAGTTTCAAGCTAACCAGACTCATACATATGGAATCTGTGGACCTCTTAAAAATATATAAGGCCAGTCAGGGAGACCTGTCAGAGCTGTTCTGCCAGATGCCAAACAACATTGTTCCTGACCCAAACATCTCTGGCCTGGACCCCTCAGAGCGGATGCTGAGCATCTATTCCCACTGTAAGGCTTTCCTACCACACCTGAAGAGAGTCACTGAGCAACAGAGGGACTTACAGCCACCCTCCAGCCCCCTGCTAAACAACCTCACCACTGCCCAGTACCGCACTAGTGGTCTGGCCAACCAAATAAACTGCATTTACCAAACCCTCTTTCCAAACCTGCCCATCCCACTTGAACCTGTAGACGGACCGACATCAATACACCCCTCCCAAAACGTGTTCCAACAGAAGGTCTATGGTTGTGTGGTTCTGAAGAATTTCAAGGAGCTGCTGTCACAGATCAGACATGAACTAAGGACCATAAAGAACCAAATGTGCAAAAGTAGGACATTTGCATACACAAATGCACTGTTCTGAGGCCACCtttctattctattttatttattatttatttgtacaCGTGTTCAGAAGTTACGGAAGCTTATTGCTGCCACTGAAAAAAAAACTGTCCGCACAAATGTTCGACTTTGAATaacttaaatatattttgtttgtgTTGAGAATGAATTAACTTAACTTGTGTGTTAAAATTGCCCTGCAGTATTCTTGTAGACTACTGTGAGATTTTAAAATGAACGTCTTTTGTCAAATCTGAGTCACTTTGATAGTTTTGTCCATTTTAAGTTTTGTGAGCAAATTAAAAATAAGTATTCTCG

Function

NR:

description
uncharacterized protein LOC110537176

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623013.2 True 1022 mRNA 0.42 3 21484831 21486628

Neighbor

gene id symbol gene type direction distance location
LOC118937643 NA coding downstream 19194 21446041 ~ 21465637 (-)
LOC110537173 LOC106568261 coding downstream 124376 21333045 ~ 21360455 (-)
LOC110537172 NA coding downstream 172173 21311912 ~ 21312861 (-)
LOC110537170 LOC106568196 coding downstream 196328 21273895 ~ 21288503 (-)
LOC110539129 NA coding downstream 255491 21227020 ~ 21229340 (-)
LOC110537177 LOC106568210 coding upstream 8634 21495262 ~ 21501995 (-)
LOC110539130 LOC106568216 coding upstream 36886 21523514 ~ 21524891 (-)
LOC110537178 susd2 coding upstream 39739 21526367 ~ 21544494 (-)
LOC110536817 LOC106568205 coding upstream 73241 21559869 ~ 21582291 (-)
cry5 LOC106568206 coding upstream 159186 21645814 ~ 21655245 (-)
G1048740 NA non-coding downstream 30854 21417324 ~ 21453977 (-)
G1048018 NA non-coding downstream 272273 21130153 ~ 21212558 (-)
G1047961 NA non-coding downstream 357273 21127230 ~ 21127558 (-)
G1047896 NA non-coding downstream 430138 21053898 ~ 21054693 (-)
G1048776 NA non-coding upstream 7087 21493715 ~ 21493950 (-)
G1048820 NA non-coding upstream 104423 21591051 ~ 21592576 (-)
G1048818 NA non-coding upstream 112165 21598793 ~ 21599461 (-)
G1048834 LOC106568202 non-coding upstream 130571 21617199 ~ 21617498 (-)
LOC110537166 srsf9 other downstream 547930 20933954 ~ 20938307 (-)
LOC110537162 LOC106568189 other downstream 618750 20862558 ~ 20888980 (-)
G1047473 NA other downstream 782791 20701540 ~ 20702040 (-)
LOC110537156 LOC106568185 other downstream 885404 20488123 ~ 20599476 (-)
G1047325 NA other downstream 988403 20495565 ~ 20496428 (-)
G1048931 NA other upstream 298563 21785191 ~ 21785557 (-)
G1048983 NA other upstream 402910 21889538 ~ 21889869 (-)
G1049013 LOC106568226 other upstream 444555 21931183 ~ 21931785 (-)
G1048996 NA other upstream 450703 21937331 ~ 21938200 (-)
G1048995 NA other upstream 451818 21938446 ~ 21942996 (-)

Expression


Co-expression Network