LOC110537177 (LOC106568210)


Basic Information

Item Value
gene id LOC110537177
gene name LOC106568210
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21495262 ~ 21501995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937183.1
GAGCTGGAGAGATCAATAGAAGGCACTAGAAACAACCATCTAAGAAAGAGCACAATGTATTTTGACTGAAAATGAATTGGAATATATAATAAATATCTAGCTGATTAGTATCGTCAGAGGGGAAATATGCCTTGGATGGATCTCTGTTTGATTTACATTGTTTCACAGATCACCTAACATTTCATGTCATCATGGGAATAGAAGAAAAGGAATACTGCCCATAatctttttatttgattttgagtTCGGGAGGAATGCAACAATCTCTCTTTATAattcccctcctcttctttttGCCCTGATTGTATGTTATAGGCGTTGTATATTTCACCCTTTTCCACCGGATCCATTTGGTTCCTCCTCCTCAGGAAGTGGAGACGCCAGAGACAAGGACTGCCTTCAGCTGCTGCCTTCCTGGCGGGGCCCGCTATCACTCTGCGATGCCCTGTTCATTTCTAGCGAGGAGCTGCAGGCAGTAGCGAGGGACCACGCAGGGGAAGGATGCATTTAAAGCAGGATGTGTGCTGGATGCTGGGAGACACGGCAGCGATAGCAGCAGCAACAGCGAGCACAGAGGGCCTGGGAAGcgcccaccccctctctctcctccttttcctcccccCCTGCAGGACCATGCTTGCGTGAGGGATGAGGCTGTGCACAGGGACGCCAGGCCAGAGCTGCGGCCTACTTCTTCTCACAAGAGCCGGGCTCTCGACTGCAAGATCTGTGAATGCTTTGCCACCATCAAATCATCAGCATCTTTGGTCACCAGGTAGATCCAGGAGCATGAGCAGGACTCTGAGCTGCGGGAGCAGATGTCTGGTTATAAGCGCATGCGGCGGCAGCACCAGAAGCAGCTGATTGCCCTGGAGAACAGGCTGAAGGCGGAGATGGATGAGCTTAGGCTCCGGTTGCAGAAAGAAGTGGAGACCCACGCCAACAACACTTACATAGAACTGGAGAGACTGGCCAAACGTCACGCCGTTCACACAGACAAAGAGTTAAAGGCAGCTacagcagaggagaagaggatccAGCAACAGATCATTGCCCAGCAAAAGAAGGAGCTGACCACCTTCTTAGACAACCAGAAGAGAGAGTACAGGCTCTGTAAAGAGAAGATGAAAGAGGAGATGAATGAGGACCCCAGTACACCCAAGGAGGAGAAGCAGGAGCGTCTGTCCAGGCACAAGGAGACGGTGCAGCGCTCACAGGCTGATGATGAGGCCCATCTCCTTGACCAGCAGAGGCTGGTCTATGACAGAAGTTGCCGGGCCATGAAACGCAGGACACTGGTCAGGAGGCACGAATTTGAACACGAGCAAATGAGAGAGGAGCTGAATAAGAAGAAGACCCAGAAGGAGATGGAGCAGGCCCTGATGATCCGACAGGACGAGTCCACTCAGGAGCTGGAGCGCAGGCAGCTGCAGACACTGCAGAGGCTCCGTGTTGAGCTGATCCGCCTGCAGCACCAGACCGAGTTGGAGAACCAGGAGGAGTACAACGGCCGGCGGCAGAGAGAGCTGCACAGGAAGCACGCCCTAGAGCAGAGGCAGCAGCCCCGGAACCTCAAGATGTTGGAGATGCAGATCAAGAAACAGTTCCAGGACACGTGTAAGGTGCAGAACAAGCAGTACAAATCCCTGAGGAACCATCAGCTTGAGGTCTCTCCTAAGAGTGAGCACAAAGCCATCCTAAAGTCACTGAAGGAGGAGCAGACACGCAAGCTCGCCGTGCTGGCCGAGCAGTACGAGCAGAGCATCAACGAGATGATGGCCTCACAAGCGATGCGTCTGGAGGAGGAGCAGCAAGGAGAGTGCCAGGCATTGAAGCAGCAGCTGCAGCAGGAGATGGAGCTCCTGGATGCCTACCAGAACAAGACCAAGGCCCAGACAGAAGCCCAACACGAGCGGGAGCTGCAGAAGCTGGAGCAGGAAGTCTCCTTGCGCAGGGCCCACCTGGAACAAAAGATTGAAGAGGAGCTGGCCTCACTTCAGAAGGAACGCACTGAAAGGATCAAGCACCTGTTTGAACggcaagagagggagatggacGCTTTCGATGCAGAGAGCGCTAAGCTGGGGTTTGGGAGCTTAGGATCACTGGACTTCCCCAAGGAGGACGACAGATGaaaatggatgtgtgtgtggaggactcTTCGCTTCTGGTGTATGGTGTAGACACGTGCTTGCACGGTTTCACTGTCGACTTGACCATCGTCAACCTCCACAGTGACAACGCTggataactctctctctctctctttttctctctctagtctTTTAGATACCACATTACAGCATAGTGCTGTCATGTGCCAGGGGAACTACTTTTGTGCAATTTAAAAAAGGGGGAAAATAAAACAAGATTAATTCAAAACACAAGATTAAACCAAGACAAACCAAGAAACTAATTCTTATCAAAAATAAGAACTCTTTCCTCCATGCCATCACAGCTCCTTTTGGTATAAAATTCAGGAAATTTTAGTAAAAATGAGCACTTTGATATGTTTAAGTATTAACCATGTTCATATAATGCTTAATGCGTATGTCACATGGAGGGGCATTGTGGAATGTGAGCTGCGGACTACACCGTGATGTTTAGCGGCTTCATCTTTCTTCTCAGAGAATGTGAATAATACTGGATGTGAATACTGTGAGCTAAAACGAGGGTATGGGGACGGTGTCAGATGTATGTACACAGTTTTATGGAGAGCTTTTACTTAATTCCATATTGAGCTAAAGAATATAGTCCTTCACTTTTTTAAACAATTACGATATTTATGTTCCATTGTTCAGTATTTAGGATTGATTGGCATCAGTTTGATCAAGGTGTGTATTTTATCACAATGATTCAACTCAGTAAAACTGCTTATTGTTGCATGCACTTTAAAGACACATTCAGGTTGTGAAGTAAAGCATGAATCTGTCAAGAGATTTTAGCCGTTTGTAAATAAGTGGTCATAGCATTTATGTTTTAATGCCTATTGATACTGAACATAAGCGCCATATTAGATATGACAATTTCACAAATGCCTTTATTTAAGTTGTGCCTATGAAGCGGTTTTGATTTGTCGTTCGTTCATGTTTGTTTAGCACGGCCAACACCATTGTTTGTTCCATTCCAATTTGTGAATCATTTAATGTTCACTAATCAAAGGTCTTGTAAAGGAAATGGTGAGAATTGTGCTGTATAACTTTTGATATAAATATTTCTATTTGAGAACCTAACTAGGAGATACAGAAGATTTGGTCGATTACTTGATGAAGGAACTTCACATTATaatttggaatgttttttttttgtcacaaatAAAACTGACATGGTAATACAGTAGATCAACATACTGAAAACGAATCACTGCAGACTTATCAGATTGTATAAAAACAGTTTAATGTTATCACAGAATTActgtaaatacatattttttaaagatGTCTGGCAGGTGGTTGCTTTGTTCTGGGTTGCATTCAAGTCATAGCTGTTTAGCTACCAGATGTACAATGTTTTGCAGTGTTCACGGTTGTTATTTCACATAAGGTTGCACAATGTGTCCATTACAGTGACTTGATTTCTACTATCACCATCAGCCTTTGTGATCCTGTGACACAGACAGAAGACCAGATTGAATGTCTGTCTATGGATGTTACAAACTATTTCAAAGTGTCCAGGGTGAACAGTTTCAAAAGATTTCTTGAATGCAACCCTGGTATTTTGACAGTTGCCTCCAAACTCTCCTGTTCCCTATACATTGATAAGTGATGGAAATCATGCTCTTCATAGTGGTGGGCTGGGCAAGTGAGATTGAGAATGGTATAATATCTGACACAAATGCAAGAGAACTAACTATGGAATTCGAAATACATGAATAAACAACTAATATTTCCAATGTGAACAACCCAGTATGGCATTGTTGATACCACCCAGACTTATGGCTCCTTGCAAGAATTCAAGTGTCAAAGTTATTTAGTAGGCCTCATTTTTGGAATGATTTGCTGTAAATTACTCCTTTGAAAGCAAAATATTTTGAGTTTGGAAGGTTTTTCAGATTGTAACTTTTGTTGACAAATGGTTCCATATGATCCATATGCTATTTTCTCTGGGTTGGTTGAAAATGGTTTAAACTTGTTATGAACCAAAGTGTTTATGTGGACTTCAGTTATAAAGAAATATGTATTTAGCTAGAATAAAGGGGACTTTCCTAAACTAAGCCATGCAGCATTTCCTGTGTGGCACAGACAAAATAAAAGAGATTCTCTTGAAA
>XM_036937184.1
GAGCTGGAGAGATCAATAGAAGGCACTAGAAACAACCATCTAAGAAAGAGCACAATGTATTTTGACTGAAAATGAATTGGAATATATAATAAATATCTAGCTGATTAGTATCGTCAGAGGGGAAATATGCCTTGGATGGATCTCTGTTTGATTTACATTGTTTCACAGATCACCTAACATTTCATGTCATCATGGGAATAGAAGAAAAGGAATACTGCCCATAatctttttatttgattttgagtTCGGGAGGAATGCAACAATCTCTCTTTATAattcccctcctcttctttttGCCCTGATTGTATGTTATAGGCGTTGTATATTTCACCCTTTTCCACCGGATCCATTTGGTTCCTCCTCCTCAGGAAGTGGAGACGCCAGAGACAAGGACTGCCTTCAGCTGCTGCCTTCCTGGCGGGGCCCGCTATCACTCTGCGATGCCCTGTTCATTTCTAGCGAGGAGCTGCAGGCAGTAGCGAGGGACCACGCAGGGGAAGGATGCATTTAAAGCAGGATGTGTGCTGGATGCTGGGAGACACGGCAGCGATAGCAGCAGCAACAGCGAGCACAGAGGGCCTGGGAAGcgcccaccccctctctctcctccttttcctcccccCCTGCAGGACCATGCTTGCGTGAGGGATGAGGCTGTGCACAGGGACGCCAGGCCAGAGCTGCGGCCTACTTCTTCTCACAAGAGCCGGGCTCTCGACTGCAAGATCTGTGAATGCTTTGCCACCATCAAATCATCAGCATCTTTGGCCCTCTTGCTTTTCACCCCTGACCGTTCTCTCTGTGGCCTCCGACCCCTGACCCCTGTGTCCAGGTCACCAGGTAGATCCAGGAGCATGAGCAGGACTCTGAGCTGCGGGAGCAGATGTCTGGTTATAAGCGCATGCGGCGGCAGCACCAGAAGCAGCTGATTGCCCTGGAGAACAGGCTGAAGGCGGAGATGGATGAGCTTAGGCTCCGGTTGCAGAAAGAAGTGGAGACCCACGCCAACAACACTTACATAGAACTGGAGAGACTGGCCAAACGTCACGCCGTTCACACAGACAAAGAGTTAAAGGCAGCTacagcagaggagaagaggatccAGCAACAGATCATTGCCCAGCAAAAGAAGGAGCTGACCACCTTCTTAGACAACCAGAAGAGAGAGTACAGGCTCTGTAAAGAGAAGATGAAAGAGGAGATGAATGAGGACCCCAGTACACCCAAGGAGGAGAAGCAGGAGCGTCTGTCCAGGCACAAGGAGACGGTGCAGCGCTCACAGGCTGATGATGAGGCCCATCTCCTTGACCAGCAGAGGCTGGTCTATGACAGAAGTTGCCGGGCCATGAAACGCAGGACACTGGTCAGGAGGCACGAATTTGAACACGAGCAAATGAGAGAGGAGCTGAATAAGAAGAAGACCCAGAAGGAGATGGAGCAGGCCCTGATGATCCGACAGGACGAGTCCACTCAGGAGCTGGAGCGCAGGCAGCTGCAGACACTGCAGAGGCTCCGTGTTGAGCTGATCCGCCTGCAGCACCAGACCGAGTTGGAGAACCAGGAGGAGTACAACGGCCGGCGGCAGAGAGAGCTGCACAGGAAGCACGCCCTAGAGCAGAGGCAGCAGCCCCGGAACCTCAAGATGTTGGAGATGCAGATCAAGAAACAGTTCCAGGACACGTGTAAGGTGCAGAACAAGCAGTACAAATCCCTGAGGAACCATCAGCTTGAGGTCTCTCCTAAGAGTGAGCACAAAGCCATCCTAAAGTCACTGAAGGAGGAGCAGACACGCAAGCTCGCCGTGCTGGCCGAGCAGTACGAGCAGAGCATCAACGAGATGATGGCCTCACAAGCGATGCGTCTGGAGGAGGAGCAGCAAGGAGAGTGCCAGGCATTGAAGCAGCAGCTGCAGCAGGAGATGGAGCTCCTGGATGCCTACCAGAACAAGACCAAGGCCCAGACAGAAGCCCAACACGAGCGGGAGCTGCAGAAGCTGGAGCAGGAAGTCTCCTTGCGCAGGGCCCACCTGGAACAAAAGATTGAAGAGGAGCTGGCCTCACTTCAGAAGGAACGCACTGAAAGGATCAAGCACCTGTTTGAACggcaagagagggagatggacGCTTTCGATGCAGAGAGCGCTAAGCTGGGGTTTGGGAGCTTAGGATCACTGGACTTCCCCAAGGAGGACGACAGATGaaaatggatgtgtgtgtggaggactcTTCGCTTCTGGTGTATGGTGTAGACACGTGCTTGCACGGTTTCACTGTCGACTTGACCATCGTCAACCTCCACAGTGACAACGCTggataactctctctctctctctttttctctctctagtctTTTAGATACCACATTACAGCATAGTGCTGTCATGTGCCAGGGGAACTACTTTTGTGCAATTTAAAAAAGGGGGAAAATAAAACAAGATTAATTCAAAACACAAGATTAAACCAAGACAAACCAAGAAACTAATTCTTATCAAAAATAAGAACTCTTTCCTCCATGCCATCACAGCTCCTTTTGGTATAAAATTCAGGAAATTTTAGTAAAAATGAGCACTTTGATATGTTTAAGTATTAACCATGTTCATATAATGCTTAATGCGTATGTCACATGGAGGGGCATTGTGGAATGTGAGCTGCGGACTACACCGTGATGTTTAGCGGCTTCATCTTTCTTCTCAGAGAATGTGAATAATACTGGATGTGAATACTGTGAGCTAAAACGAGGGTATGGGGACGGTGTCAGATGTATGTACACAGTTTTATGGAGAGCTTTTACTTAATTCCATATTGAGCTAAAGAATATAGTCCTTCACTTTTTTAAACAATTACGATATTTATGTTCCATTGTTCAGTATTTAGGATTGATTGGCATCAGTTTGATCAAGGTGTGTATTTTATCACAATGATTCAACTCAGTAAAACTGCTTATTGTTGCATGCACTTTAAAGACACATTCAGGTTGTGAAGTAAAGCATGAATCTGTCAAGAGATTTTAGCCGTTTGTAAATAAGTGGTCATAGCATTTATGTTTTAATGCCTATTGATACTGAACATAAGCGCCATATTAGATATGACAATTTCACAAATGCCTTTATTTAAGTTGTGCCTATGAAGCGGTTTTGATTTGTCGTTCGTTCATGTTTGTTTAGCACGGCCAACACCATTGTTTGTTCCATTCCAATTTGTGAATCATTTAATGTTCACTAATCAAAGGTCTTGTAAAGGAAATGGTGAGAATTGTGCTGTATAACTTTTGATATAAATATTTCTATTTGAGAACCTAACTAGGAGATACAGAAGATTTGGTCGATTACTTGATGAAGGAACTTCACATTATaatttggaatgttttttttttgtcacaaatAAAACTGACATGGTAATACAGTAGATCAACATACTGAAAACGAATCACTGCAGACTTATCAGATTGTATAAAAACAGTTTAATGTTATCACAGAATTActgtaaatacatattttttaaagatGTCTGGCAGGTGGTTGCTTTGTTCTGGGTTGCATTCAAGTCATAGCTGTTTAGCTACCAGATGTACAATGTTTTGCAGTGTTCACGGTTGTTATTTCACATAAGGTTGCACAATGTGTCCATTACAGTGACTTGATTTCTACTATCACCATCAGCCTTTGTGATCCTGTGACACAGACAGAAGACCAGATTGAATGTCTGTCTATGGATGTTACAAACTATTTCAAAGTGTCCAGGGTGAACAGTTTCAAAAGATTTCTTGAATGCAACCCTGGTATTTTGACAGTTGCCTCCAAACTCTCCTGTTCCCTATACATTGATAAGTGATGGAAATCATGCTCTTCATAGTGGTGGGCTGGGCAAGTGAGATTGAGAATGGTATAATATCTGACACAAATGCAAGAGAACTAACTATGGAATTCGAAATACATGAATAAACAACTAATATTTCCAATGTGAACAACCCAGTATGGCATTGTTGATACCACCCAGACTTATGGCTCCTTGCAAGAATTCAAGTGTCAAAGTTATTTAGTAGGCCTCATTTTTGGAATGATTTGCTGTAAATTACTCCTTTGAAAGCAAAATATTTTGAGTTTGGAAGGTTTTTCAGATTGTAACTTTTGTTGACAAATGGTTCCATATGATCCATATGCTATTTTCTCTGGGTTGGTTGAAAATGGTTTAAACTTGTTATGAACCAAAGTGTTTATGTGGACTTCAGTTATAAAGAAATATGTATTTAGCTAGAATAAAGGGGACTTTCCTAAACTAAGCCATGCAGCATTTCCTGTGTGGCACAGACAAAATAAAAGAGATTCTCTTGAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937183.1 False 4267 mRNA 0.44 8 21495262 21501995
XM_036937184.1 True 4332 mRNA 0.45 8 21495262 21501995

Neighbor

gene id symbol gene type direction distance location
LOC110537176 LOC106568262 coding downstream 8634 21484831 ~ 21486628 (-)
LOC118937643 NA coding downstream 29625 21446041 ~ 21465637 (-)
LOC110537173 LOC106568261 coding downstream 134807 21333045 ~ 21360455 (-)
LOC110537172 NA coding downstream 182604 21311912 ~ 21312861 (-)
LOC110537170 LOC106568196 coding downstream 206759 21273895 ~ 21288503 (-)
LOC110539130 LOC106568216 coding upstream 21519 21523514 ~ 21524891 (-)
LOC110537178 susd2 coding upstream 24372 21526367 ~ 21544494 (-)
LOC110536817 LOC106568205 coding upstream 57874 21559869 ~ 21582291 (-)
cry5 LOC106568206 coding upstream 143819 21645814 ~ 21655245 (-)
LOC118937644 LOC106564323 coding upstream 165428 21667423 ~ 21669467 (-)
G1048776 NA non-coding downstream 1312 21493715 ~ 21493950 (-)
G1048740 NA non-coding downstream 41285 21417324 ~ 21453977 (-)
G1048018 NA non-coding downstream 282704 21130153 ~ 21212558 (-)
G1047961 NA non-coding downstream 367704 21127230 ~ 21127558 (-)
G1048820 NA non-coding upstream 89056 21591051 ~ 21592576 (-)
G1048818 NA non-coding upstream 96798 21598793 ~ 21599461 (-)
G1048834 LOC106568202 non-coding upstream 115204 21617199 ~ 21617498 (-)
G1048636 kctd10 non-coding upstream 162110 21664105 ~ 21666069 (-)
LOC110537166 srsf9 other downstream 558361 20933954 ~ 20938307 (-)
LOC110537162 LOC106568189 other downstream 629181 20862558 ~ 20888980 (-)
G1047473 NA other downstream 793222 20701540 ~ 20702040 (-)
LOC110537156 LOC106568185 other downstream 895835 20488123 ~ 20599476 (-)
G1047325 NA other downstream 998834 20495565 ~ 20496428 (-)
G1048931 NA other upstream 283196 21785191 ~ 21785557 (-)
G1048983 NA other upstream 387543 21889538 ~ 21889869 (-)
G1049013 LOC106568226 other upstream 429188 21931183 ~ 21931785 (-)
G1048996 NA other upstream 435336 21937331 ~ 21938200 (-)
G1048995 NA other upstream 436451 21938446 ~ 21942996 (-)

Expression


Co-expression Network