foxred1 (foxred1)


Basic Information

Item Value
gene id foxred1
gene name foxred1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21628297 ~ 21643733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623022.2
CGCACCAGACAGTGAATATTAATTTCAGGGTTAGCCAACACACCATTTTGAATCTGTGCTCaaaagccagctagctagcttacattaGCATTTACAGTGTGCTAGTAGTGCTGCTAGAGAGAAGAAATCAAGCTCCAGCAATGTCAATGTGGAAGGGACTGCACATGACAGCGCGTGCCGCTCATGGAATTCATGTTTCCTCGCGATTTATCCATAAACACACGCGACTCTGCACCCGAAACATCAGCACTAGTAGACCTGTGCAAAATGATTTCTTCAAAGATCTCGAGAACCAGTTCAAAGCGTTCAGGGAGAAAGCGGCAGACGCCATGCCTGGCAGTGACTGGACTCCGTTTGAGAAGAACTCCTCACTCCCCCCTGAGAGGGCAGACATCGTGATCGTAGGAGGTGGCGTGGTGGGCTGGTCCATTGCCTATTGGCTGAAGCAGAAAGAGATGATTCGGGACGGGGTGCGGGTGCTGGTGGTTGAGAGGGACCCCACTTACTCCCAGGCCTCCACGGTGCTGTCTGCTGGGGGGATTCGACAGCAGTTCTCCTTGCCAGAGAACATCCACCTGTCCATGGCCTCGGCTGACTTCATGAGGAACATCAATGAACACTTGAGTGTGCTGAATGACGACCCCGTGGACCTGCAGTTTAACCACTCCGGATATCTTTTTCTGGCCAGTGAAAAAGTGGCTCATATCATGGAAGAAAACTACAGCACCCAAAGGTATGCTGGAGCAAAAGTCTCTCTTCTTTCACCTACACAACTAAAGGAGAAATGTCCATGGATCAACACTGATGGAGTAGTGCTGGCTTCATATGGGCTGGAGAACGAGGGCTGGTTCGACCCCTGGATGCTGTTGAACGCTTTCAGACGGAAGGCCATCTCCATGGGGGTCTACCAGTGCTTTGGAGAAGTCACAGGTTTTAGTTACACCACAAACACAATGACTACTGCAGAAGGAGACAAGGTGGATTTCAGGAGAATCAAATATGCTAATGTCCAGATGCCCAACAGTCTGGAGTACCAGCCTGTGGAGTGTGCCATCGTGGTGAACGCTGCAGGGGCACTCTCCGGTAAGGTGGCAGAGATGATGGGCATCGGGCTCGGCCCGAAAGACACCATCGCTGGAATCCCGCTACCCGTGGAGCCCAGGAAAAGGTTCATCTATGTGGTCCACTGTCCAAACGGGCCAGGGCTGGACACTCCCTTCCTCGTAGACTACTCTGGAGTGTACTTCAGACGAGAGGGGCTGGGAGGAAACTACATTGCTGGGATGTCACCAGAAGAGGAAGAGGAGCCAGAGACCAATAACCTGGAGGTGGACCACCAGTTCTTCCAGAACATCTGGCCTCACCTGGCCCACCGGGTCCCTGCCTTTGAGTGCCTCAAGGTGAAGAGCGCATGGGCCGGCTTCTACGACTACAACACCTTTGACCAGAACGGCATCGTGGGCATGCACCCGCTGGTCAACAACATGTTCTTTGCCACAGGCTTCAGTGGGCACGGGCTGCAGCACTCGCCGGCAGTAGGTCGCGCCATGGCCGAACTCATCCTGGACGGGGGCTTCAAGACCCTGGACCTGAGCGCCTTCAGCTTCAAACGCATCATGACCAAGGAACCCATATTAGAGAGGAACATTGTCTGAGAGGGAGATTCTAATATTTTTACGAAGGAAAGAGTGGAAAGAGGAATGCCTTGTCCCATTCTACAGTCTTGTGGGAAATATGGTCTCGAAATAAGAGTTTGTCAAAGTTTCTGGTAAGGTGAATGGTGTCCTATTAATTTCTTCACTAAAGTGCATGAGGGAGTAACTGCACATTTCACAAGCTCAATTCTGTGGTCTACCGGTGAGACCACATGGCAGCGGCCTCAGCCAAAGTGCTTTGCACTTAAACACAGTCACCCATTGCTTTGGGAGTGCTCAGAACTCCGACCGCAAGACTGAATGGGAAAAAATGGGATGTGTCAGAAATGCATCTCAGGAACGAGTGAGGGACTTTGTGggatgaggaagagaagagggtagAAGAAAGAGCCTTGACAGCAAACATGGACTTCTGAAGTAAGCATGGAATTTAGGATGCCTAATATCTAACCTACTGTACAAAGAATAAGGTACTGACATACTATGCGTTAGCACAATTAGAAAGGCTTTTAGTTGGATATTGGAGTAATTTCCATTCCTCCGATGGTAAACCTGTATTGAATGGCTTGATTATgcatcttttttattttatttaaccatttaACCTAGACATGTCACTTTACTCTTGATCACGTAAGCATTCAACTGTATTTGTATAAGAAAAagtgaagttggaagtttacatacaccttagccaaatacatttaatcctcgtaaaaattccctgttttaggtcagttagaatcaccactttattttaagaatgtgaactgtcagaataataggagagtgacttacttcagctttta

Function

symbol description
foxred1 Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 19. Orthologous to human FOXRED1 (FAD dependent oxidoreductase domain containing 1).

NR:

description
FAD-dependent oxidoreductase domain-containing protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K18166 FOXRED1; FAD-dependent oxidoreductase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623022.2 True 2464 mRNA 0.49 11 21628297 21643733

Neighbor

gene id symbol gene type direction distance location
LOC110537179 LOC106568202 coding upstream 2063 21598765 ~ 21626234 (+)
LOC110536816 myhz2 coding upstream 111481 21510489 ~ 21516816 (+)
LOC110537175 LOC106568200 coding upstream 147181 21464547 ~ 21481116 (+)
LOC110537171 LOC106568197 coding upstream 329894 21289084 ~ 21298403 (+)
LOC110537168 LOC106568260 coding upstream 663830 20961503 ~ 20964467 (+)
LOC110537183 LOC105014907 coding downstream 11659 21655392 ~ 21666107 (+)
LOC110537185 LOC106568207 coding downstream 41625 21685358 ~ 21692839 (+)
LOC110537186 LOC106568203 coding downstream 55029 21698762 ~ 21722433 (+)
LOC110537187 LOC106568201 coding downstream 86573 21730306 ~ 21752514 (+)
LOC110537189 LOC106568211 coding downstream 111561 21755294 ~ 21758765 (+)
G1048275 NA non-coding upstream 1328 21626628 ~ 21626969 (+)
G1048273 NA non-coding upstream 13569 21614246 ~ 21614728 (+)
G1048325 NA non-coding upstream 33870 21594115 ~ 21594427 (+)
G1048259 NA non-coding upstream 122938 21505083 ~ 21505359 (+)
G1048257 NA non-coding upstream 125641 21502252 ~ 21502656 (+)
G1048350 NA non-coding downstream 30809 21674542 ~ 21674800 (+)
G1048363 NA non-coding downstream 58385 21702118 ~ 21702698 (+)
G1048382 NA non-coding downstream 73033 21716766 ~ 21716988 (+)
G1048384 NA non-coding downstream 75359 21719092 ~ 21719316 (+)
G1048385 NA non-coding downstream 75683 21719416 ~ 21719740 (+)
LOC110537158 LOC106568186 other upstream 936555 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1116778 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1334446 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1480883 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2662355 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 189361 21833094 ~ 21834812 (+)
G1049502 NA other downstream 882208 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 1085197 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2533697 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3708851 25352530 ~ 25719607 (+)

Expression


Co-expression Network