LOC110537190 (iscua)


Basic Information

Item Value
gene id LOC110537190
gene name iscua
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21760881 ~ 21768970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623038.2
GTTGACTCTGGCCTTGAGCATCCAGAACAGGGACCGGAGAGCCGAGTTGATCCGAGCCCCTAGGCCCTGCCCCCCCATCACATTAGAATACTGCCTAACAAGAACAATCTGTGTGGAGCCAAGGAGCCCAGTCCTTTTCTGGGAAGCAAGGcagccagagagggaggaagggaggaaaggagaggagagggggaaggagggatttGTCCCGATGGCAAAGAACTTTACGTTTTATTTTTTTCTGTGCCAATCAGAGAAACCTCCAGTCTGAAATCTGAAACTGTAGAATTACTGTTGGAGGAGGTCCTATAGGAGATGACGTTCCTCATGGCACTTAATCTGATTGGTCTGTTGGTGACGCTGTGGTCCAGCAGCCCCAGTCTGGCCACACCCCTCCCTTTCAACATTTCATTGGAGGGAAGTGCAGAGGGGGAGGAGCTAGACAGCCTCATTGACACCCCTTCCCCACCTGCCACCAGTGGCCCTGCCTTGGAGTCCTCAACCACCTCACATGGCTCCACCCACGTAGAGCACTTATTGCTCAGGCAAATGGTTCACTTCCTGCAGGATAACCTGTTCCTCATCCTAGTTTTCTTCACACTCTTCATCACTATCTTCCTCATCCTCTGCTGTGCTTGCATCATGAGCCGCAAACGAAAGATCAATGCCTACTACCCCTCGTCCTTCCCCTCTAAGATGTACGTGGACCAGAGGGACAAGACCGGAGGTACCAAGCTTTTCAACGAGTTGCCAGAGAAACCCTCCAACCGGCAGCAGGCTGAGCCAGTGGACTCCAGCAAGAAGCTCCATCATGACATCATGAAGGCAGCCAAGAACCTCCGTACTCTCTCCAAGCCTCCCCTGGGAGAGCAAGAGGGAAAAGACCCCACACAGATATCTGCAGCAGCAGAGAAAAGTCATGAGGTGAATGTTCAGGCTGTGGGAGAAATAATAGAGAAAGACAATCAGCCATCAAATCCACCAGAGCTGAGTGAGGAGGAGGTATGCCAGCTCTCAGTCAATGAAGCCCAACATAGCAGCTGCCTTGAGCAGTCAGAAATCTTTCCGGAACAGACAGGCCTAAAAAAGGATGATGAGTCATTCACatgagctgagtctccatctggCCAAGGGCACTCACAGGCTCAGCAGGAAAAGGACAGGCAAGAGGACTCCACTGTCACACTGTCTATTCCGTTGATCACTGGAGAGAAAACAGCACTTTTGCTATGCTCTCGACACTATGTTTGATCTCAATGGTTTGGACCAATTTTGCATGAGTGACAATCTTTAAGGCAAACCTGTCAGCTTTGTTTACTGCTCTTTGGATTTACCAAATTATGTCTGTTCAGTTATATGTAATCATATACTTGATTTACTTCTGTTTCCCAGTAGCCATCTTTCAATGTATCTCTCTCTAAAAGAACAACACTATGTAACCTGCCATCTTTCAATGTCTCCCTAAAAGAACAACACTATGTAACCTGCCATCTTTCAATGTGTCTCCCTAAAAGTACAACACTATGTAACCTGCCATCTTTCAATGTGTCTCTCTAAAGGGTTAACACTATGAAACCTGACCATACACCCCTATATATGCTGTCTTGTTTGATGTTTCTGTGTTTTTATTTGTACAATGGCCAAAGTAATGGTGCTGCATCTTGTTTTTCTCCCTCTTCCATTCTTTGATAGGTTAGTGAGGTGTTTATCCTAGGTTAGAGATCATTTTCAGGGCAATTTGAGGTTGCTTTTTCTTGAAGAACAAATATGGATAAGTACAGGGCAAGTTAGCCTATTTTAGAATCCCAGAGTTAAATACTTACACACTCCTCTTTAACATGTAGGCTCAGCATTCCCGAACAGTCCCATTACAAGTCAGAATGTTGAACACACTTTAATTAAATGTACTTCTTGTCCACCGATTTTGTCCTTATGTCAGAGATAATCTGATACAAAATATCCACATAGAAGCATTATCAAGCTTTTAGAGactattgcatttttttttttacagcgaCTGAGTAACCATGGTAACAGTCTAATGTTTAGACAAAGGTTAAGTTCACCATGAGCACCTCATGGTGCAGCATCTGCCACAACTTGAACTCAGACAGTATGTCTCCAACATTAAGGGAGGTATATTTACATTATAAAACCTGTGTGTAGTTAGTCAAATGTTTATCCTGTCTCTTGAAACACTTCCATTAAAGGGCCAATCTGGAGTTCAAAAAGCCATCACACCACCATTGGTTTTGGTAAAGAGCTGAGAGAACTAGAACCACTCAaagtcatagacagagctatggatacaaGCACTGGACATCCATAAGCTCAAATTGAtaattttaaccatgttttgaagctatacagtatgtttacatttacaaacattgggAGATAAACAAGTGTATATTTTGGGTTTTGATGGGGcgcaacagttgaactaagctcatgaagtATTTAGAAGTTCTATtcatcaagaatcaatggctatatatatatatatatatgcatcatTCATTTAAAGCtgtaatatgtaactttttgggcaacctgaGCAAATTCACAGAAATTAAAgtatcattctcattgaaagtctAAAAAGCAGCAGATCtgttctatgcttcccgttcttgtGTTAGTTTTAGAGGCTTtgactttcggttttgtacaacaGCTTCAAACAATATTTTTGCTTACGTGAAAcgtatttcacagcggtttagatgttacaatgattctctacactacatTTGCTTTCGTCACAAAGTGAAATTAGGCAAACTGTTACAATttcagcaaccaggaaatggcagagcaatttctgcatagtgcagatTCCAAAAGTAGATGTAGCAACTCCGAAATGACCAATTAAGTGACAACCGTTGCTCTGCTGCAGAACCAGGTCCTGTGAAAGAACTTGGGAAAGCACCAAACATAGCAGTCTACTCTACTCGTACTGTGCCATTACAATACAGGCTGGTTAGTCGtgtgtggtgtggttgaaaaCATGACCAGACACATACCAAAAATGGTTGTAGAAGTGCTGCTTTCTTTATTTTCAGTCTTCTTTGGTTGAATATGGTAGAAATTGTGAAGACAGTAGAGATTCTAAAATGTGTTGTGTTTGGTATTTGATAAAAGCAGAACCATGATCTGCATTTATGGATGAAGTCAATGTATTTACATGGCTCCGGATAAAGTATGCCAACGATGCCATCTAGTGGAGAATACAAGCATTGCTCTAATTTCTGGTAGTCTGCACACTGCTGAGAACAAAAGACAATACCTTAACCGGATTATAGAGACCTTGcatgacaaaaaaaagaaaaagacataACATACTACGTACACGTCTTACTTTATTAATTTGCATTACAACCAGGAAgtctgaaatgtgacaaaagaaGCCAAATAGATACCTTAACAGTTTGCTGTCATTTTATATCTCCTGCACTGCATTTCCTCATTGCCTTCAAAACATTTGTGCTACATGGGTGTTGATGGGACACCTTTAGAAATCTTATTCAATACTTCACCACAGCATCCATAATCA
>XM_021623037.2
CTCTGGCCTTGAGCATCCAGAACAGGGACCGGAGAGCCGAGTTGATCCGAGCCCCTAGGCCCTGCCCCCCCATCACATTAGAATACTGCCTAACAAGAACAATCTGTGTGGAGCCAAGGAGCCCAGTCCTTTTCTGGGAAGCAAGGcagccagagagggaggaagggaggaaaggagaggagagggggaaggagggatttGTCCCGATGGCAAAGAACTTTACGTTTTATTTTTTTCTGTGCCAATCAGAGAAACCTCCAGTCTGAAATCTGAAACTGTAGAATTACTGTTGGAGGAGGTGAGTCAGGCACGTTTTCCCATCCTCTCAGTTCATTTTCCCATCCATTTTCCTCAAACTCTAAAGCATCCACAGTTCTAGAGGAGCCTTTTCTGTGTGTGACCACTTCTGTGGATGGTCCTATAGGAGATGACGTTCCTCATGGCACTTAATCTGATTGGTCTGTTGGTGACGCTGTGGTCCAGCAGCCCCAGTCTGGCCACACCCCTCCCTTTCAACATTTCATTGGAGGGAAGTGCAGAGGGGGAGGAGCTAGACAGCCTCATTGACACCCCTTCCCCACCTGCCACCAGTGGCCCTGCCTTGGAGTCCTCAACCACCTCACATGGCTCCACCCACGTAGAGCACTTATTGCTCAGGCAAATGGTTCACTTCCTGCAGGATAACCTGTTCCTCATCCTAGTTTTCTTCACACTCTTCATCACTATCTTCCTCATCCTCTGCTGTGCTTGCATCATGAGCCGCAAACGAAAGATCAATGCCTACTACCCCTCGTCCTTCCCCTCTAAGATGTACGTGGACCAGAGGGACAAGACCGGAGGTACCAAGCTTTTCAACGAGTTGCCAGAGAAACCCTCCAACCGGCAGCAGGCTGAGCCAGTGGACTCCAGCAAGAAGCTCCATCATGACATCATGAAGGCAGCCAAGAACCTCCGTACTCTCTCCAAGCCTCCCCTGGGAGAGCAAGAGGGAAAAGACCCCACACAGATATCTGCAGCAGCAGAGAAAAGTCATGAGGTGAATGTTCAGGCTGTGGGAGAAATAATAGAGAAAGACAATCAGCCATCAAATCCACCAGAGCTGAGTGAGGAGGAGGTATGCCAGCTCTCAGTCAATGAAGCCCAACATAGCAGCTGCCTTGAGCAGTCAGAAATCTTTCCGGAACAGACAGGCCTAAAAAAGGATGATGAGTCATTCACatgagctgagtctccatctggCCAAGGGCACTCACAGGCTCAGCAGGAAAAGGACAGGCAAGAGGACTCCACTGTCACACTGTCTATTCCGTTGATCACTGGAGAGAAAACAGCACTTTTGCTATGCTCTCGACACTATGTTTGATCTCAATGGTTTGGACCAATTTTGCATGAGTGACAATCTTTAAGGCAAACCTGTCAGCTTTGTTTACTGCTCTTTGGATTTACCAAATTATGTCTGTTCAGTTATATGTAATCATATACTTGATTTACTTCTGTTTCCCAGTAGCCATCTTTCAATGTATCTCTCTCTAAAAGAACAACACTATGTAACCTGCCATCTTTCAATGTCTCCCTAAAAGAACAACACTATGTAACCTGCCATCTTTCAATGTGTCTCCCTAAAAGTACAACACTATGTAACCTGCCATCTTTCAATGTGTCTCTCTAAAGGGTTAACACTATGAAACCTGACCATACACCCCTATATATGCTGTCTTGTTTGATGTTTCTGTGTTTTTATTTGTACAATGGCCAAAGTAATGGTGCTGCATCTTGTTTTTCTCCCTCTTCCATTCTTTGATAGGTTAGTGAGGTGTTTATCCTAGGTTAGAGATCATTTTCAGGGCAATTTGAGGTTGCTTTTTCTTGAAGAACAAATATGGATAAGTACAGGGCAAGTTAGCCTATTTTAGAATCCCAGAGTTAAATACTTACACACTCCTCTTTAACATGTAGGCTCAGCATTCCCGAACAGTCCCATTACAAGTCAGAATGTTGAACACACTTTAATTAAATGTACTTCTTGTCCACCGATTTTGTCCTTATGTCAGAGATAATCTGATACAAAATATCCACATAGAAGCATTATCAAGCTTTTAGAGactattgcatttttttttttacagcgaCTGAGTAACCATGGTAACAGTCTAATGTTTAGACAAAGGTTAAGTTCACCATGAGCACCTCATGGTGCAGCATCTGCCACAACTTGAACTCAGACAGTATGTCTCCAACATTAAGGGAGGTATATTTACATTATAAAACCTGTGTGTAGTTAGTCAAATGTTTATCCTGTCTCTTGAAACACTTCCATTAAAGGGCCAATCTGGAGTTCAAAAAGCCATCACACCACCATTGGTTTTGGTAAAGAGCTGAGAGAACTAGAACCACTCAaagtcatagacagagctatggatacaaGCACTGGACATCCATAAGCTCAAATTGAtaattttaaccatgttttgaagctatacagtatgtttacatttacaaacattgggAGATAAACAAGTGTATATTTTGGGTTTTGATGGGGcgcaacagttgaactaagctcatgaagtATTTAGAAGTTCTATtcatcaagaatcaatggctatatatatatatatatatgcatcatTCATTTAAAGCtgtaatatgtaactttttgggcaacctgaGCAAATTCACAGAAATTAAAgtatcattctcattgaaagtctAAAAAGCAGCAGATCtgttctatgcttcccgttcttgtGTTAGTTTTAGAGGCTTtgactttcggttttgtacaacaGCTTCAAACAATATTTTTGCTTACGTGAAAcgtatttcacagcggtttagatgttacaatgattctctacactacatTTGCTTTCGTCACAAAGTGAAATTAGGCAAACTGTTACAATttcagcaaccaggaaatggcagagcaatttctgcatagtgcagatTCCAAAAGTAGATGTAGCAACTCCGAAATGACCAATTAAGTGACAACCGTTGCTCTGCTGCAGAACCAGGTCCTGTGAAAGAACTTGGGAAAGCACCAAACATAGCAGTCTACTCTACTCGTACTGTGCCATTACAATACAGGCTGGTTAGTCGtgtgtggtgtggttgaaaaCATGACCAGACACATACCAAAAATGGTTGTAGAAGTGCTGCTTTCTTTATTTTCAGTCTTCTTTGGTTGAATATGGTAGAAATTGTGAAGACAGTAGAGATTCTAAAATGTGTTGTGTTTGGTATTTGATAAAAGCAGAACCATGATCTGCATTTATGGATGAAGTCAATGTATTTACATGGCTCCGGATAAAGTATGCCAACGATGCCATCTAGTGGAGAATACAAGCATTGCTCTAATTTCTGGTAGTCTGCACACTGCTGAGAACAAAAGACAATACCTTAACCGGATTATAGAGACCTTGcatgacaaaaaaaagaaaaagacataACATACTACGTACACGTCTTACTTTATTAATTTGCATTACAACCAGGAAgtctgaaatgtgacaaaagaaGCCAAATAGATACCTTAACAGTTTGCTGTCATTTTATATCTCCTGCACTGCATTTCCTCATTGCCTTCAAAACATTTGTGCTACATGGGTGTTGATGGGACACCTTTAGAAATCTTATTCAATACTTCACCACAGCATCCATAATCA
>TU1194712
TGGTTGTAGAAGTGCTGCTTTCTTTATTTTCAGTCTTCTTTGGTTGAATATGGTAGAAATTGTGAAGACAGTAGAGATTCTAAAATGTGTTGTGTTTGGTATTTGATAAAAGCAGAACCATGATCTGCATTTATGGATGAAGTCAATGTATTTACATGGCTCCGGATAAAGTATGCCAACGATGCCATCTAGTGGAGAATACAAGCATTGCTCTAATTTCTGGTAGTCTGCACACTGCTGAGAACAAAAGACAATACCTTAACCGGATTATAGAGACCTTGcatgacaaaaaaaagaaaaagacataACATACTACGTACACGTCTTACTTTATTAATTTGCATTACAACCAGGAAgtctgaaatgtgacaaaagaaGCCAAATAGATACCTTAACAGTTTGCTGTCATTTTATATCTCCTGCACTGCATTTCCTCATTGCCTTCAAAACATTTGTGCTACATGGGTGTTGATGGGACACCTTTAGAAATCTTATTCAATACTTCACCACAGCATCCATAATCATTTCCCAATGGAAAATACCCCCAAACCATGACAAAACCATGACAAAATAAAGCGAATAAAGACAAAGCAAACTTGTCTCGGCTCACTTTGCATTTCTCACTCCTGAAAATAAGGCTTACTTTGTACCAATCACCCGATCAGTGCCCTTAAATTGTGCGTTAACGTGACAGGCTACAGAGTAGACTGGGAAATCACAGAATGCCACAGGGGCCTGGTGTGTATACTGTGTTGTCTATGTACGTTGTATGGGTGGACATAACCTGGGCTCATTTAGGATGCCCCATATATAGAAGGATGGAGGAGTAGGGAGCCAGGACTACATTTGAGTGTCTCCTTGGCAGTAGGGTGCAGGACAAGGGTGTCCAGGACTACGAGAGAGAGAGTCCTCCCTTAGTTGCTGGCTTTGACAGCCTCAATCTTGCCATCCTGCTGTTTGAGACGGTAGTCATTCAGAGCAGCTCTGATGGCATCCTCTGCCAGCATGGAGCAGTGAAGTTTGACAGGTGGAAGACTGAGCTCTTTGGCAATGTCAGTGTTCTTTATTGTCAGTGCTTCGTTAATGGATTTGCCCTTCACCCACTCTGTTACCAGGGAGCTGGAGGCAATGGCTGAGCCGCAGCCAAACGTCTTgaacctggcatccacaatcttCCCCTGATCGTCCACCTCAATCTGAAGCTTCATCACATCTCCACAAGCTGGGGCTCCCACCAAGCCTGTCCCCACATTCTTGGAGGTCTTGTCCAGGGATCCAACATTCCTTGGGTTCTCATAGTGGTCCACTACCTTCTTGTGGTAGGCGGCTTGGACCGTATATTCCGGGGAAGTGATCCTTCTCATCACAACAAGCGGGGTGATACACTTCTTTGCAACTAGACCCGCCATGTTCGCTGTTTGTCTGAAATGACGCAGTCTG

Function

symbol description
iscua Orthologous to human ISCU (iron-sulfur cluster assembly enzyme).

NR:

description
IscU iron-sulfur cluster scaffold homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623038.2 False 3559 mRNA 0.42 2 21760881 21766240
XM_021623037.2 False 3671 mRNA 0.42 2 21760886 21766240
TU1194712 True 1440 lncRNA 0.45 5 21765717 21768970

Neighbor

gene id symbol gene type direction distance location
LOC110537189 LOC106568211 coding upstream 2116 21755294 ~ 21758765 (+)
LOC110537187 LOC106568201 coding upstream 8367 21730306 ~ 21752514 (+)
LOC110537186 LOC106568203 coding upstream 38448 21698762 ~ 21722433 (+)
LOC110537185 LOC106568207 coding upstream 68042 21685358 ~ 21692839 (+)
LOC110537183 LOC105014907 coding upstream 94774 21655392 ~ 21666107 (+)
LOC110537192 LOC106568218 coding downstream 8194 21774434 ~ 21777732 (+)
LOC110537195 LOC106568209 coding downstream 30105 21796345 ~ 21805989 (+)
LOC110537193 idd coding downstream 39959 21806199 ~ 21826261 (+)
LOC110537199 LOC106568222 coding downstream 85878 21851548 ~ 21862294 (+)
LOC110537201 LOC106568226 coding downstream 129083 21895323 ~ 21936857 (+)
G1048388 NA non-coding upstream 27108 21733555 ~ 21733773 (+)
G1048268 NA non-coding upstream 34433 21723297 ~ 21726448 (+)
G1048385 NA non-coding upstream 41141 21719416 ~ 21719740 (+)
G1048384 NA non-coding upstream 41565 21719092 ~ 21719316 (+)
G1048382 NA non-coding upstream 43893 21716766 ~ 21716988 (+)
G1048399 NA non-coding downstream 3846 21770086 ~ 21770287 (+)
G1048407 NA non-coding downstream 19602 21785842 ~ 21786052 (+)
G1048377 NA non-coding downstream 61473 21827713 ~ 21828270 (+)
G1048419 LOC106568221 non-coding downstream 69486 21835726 ~ 21835994 (+)
G1048429 NA non-coding downstream 84548 21850788 ~ 21851359 (+)
LOC110537158 LOC106568186 other upstream 1069139 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1249362 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1467030 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1613467 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2794939 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 66854 21833094 ~ 21834812 (+)
G1049502 NA other downstream 759701 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 962690 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2411190 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3586344 25352530 ~ 25719607 (+)

Expression


Co-expression Network