LOC110537192 (LOC106568218)


Basic Information

Item Value
gene id LOC110537192
gene name LOC106568218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21774434 ~ 21777732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937198.1
CTCCCTGCAGTTATTTTGATGCTCTTGAACACAGCCACCTTTGGTGTTTTTGGGTCGCCTTGTTAACGGCAAAAAGCACAGTTTAGGACGAGATTTACCATTGAACTACCTGCTTTATGTATCTTTTTGGGGATCTGACTAAATTCACATGGAAATCAAGGGGGCGGCTAGATACATCACCCCACTTTACCTCCTGATCTGCGGAAACAATGGCTAGTCCTGCCCCTCCACCAGCCACTGTCTCGACCGCCACTGAGAACCCCAGCAGCTCGACTGCTGCTGGGGAGGGTGGCAATCAGGACAGCACCTTCGAATGCAACATCTGCCTGGACACCTCCAAGGATGCGGTGATCAGTCTGTGTGGGCATCTCTTTTGTTGGCCCTGTTTACATCAGTGGTTAGAGACCAGACCTAACAGACAAGTGTGTCCAGTGTGCAAGGCAGGCATCAGTCGAGACAAAGTCATCCCACTATATGGCAGGGGAAGCACAGGCCAGCAGGACCCACGGGAGCGAACGCCTCCTCGACCACAAGGACAGAGGCCAGAGCCAGAAAATCGTGGATTTCAGGGGTTCGGCTTTGGAGACGGAGGATTCCAGATGTCTTTTGGCATTGGTGCCTTTCCATTTGGCATTTTCTCTACAGCTTTTAACATCAATGATGGAAGACCACACCCAGCTGCCCCTGGGACCCCCCAGCACATGGATGAACAGTTCTTGTCCCAACTCTTTCTAATTGTGGCTCTGGTGATTGTGTTTTGGCTACTAATCACATAAATGTCTGGGCGGCCAGGACTAAGGCTCAATTTGGACAGTTCTTAATACTCTGTTTCCAGATACTTGTTTGATTTTGTACTTTTCCACATTCTAAGTATTGTCCTCTGAACTTGCTGTTGGTTTATTTTCAGTAATTGAGATTAAACTGTTTGATTACATCTGTACTATGAATCCTACAGAAGTCTTAAAATGGCCCTACCTCTTCATTTCCATCAATGGTGTGTTTAATAGACAAAGTTTCCTTGGCTGGCAATATAGAACCAGATTTTAAAAGAAAAAAATGGCAAATCAGTAAATGTAAGGTATCACCCTCTGTGTTTGTATGGATGTAGATTATGAGCAGTATGACCTGTTTCTGAACTGAATATCAATTCGGGAAGAGATGCATAATTGGCGATAGACTTTTAAATTGTTGACACAATTGCCTTTTGAGTAACATTACCAGTATGCAGCCATTTTAACAATACAGTAAGTAGGACATTGTGTGGTGTCAGCAAGGGAATAGTCCAAAGGAGCAGTATTGATATGGGTTTAAGTTATTGAATAATTAACTGGTATGTCCTCTGTTGCCATAGGAGCTATTTTGTTAACTATTTCTCATGTTTCAGAAAATAAGCTTACAATTAAAGGAGCTATTTTTGGTTGAAGGATAGTCATTGTCTGCCACTAGTAAGACTATTATTTAGTACAAATGGAAATGTAGAATTCTAATGCATATATAATAAAGAACTTGGGATGTG
>XM_036937199.1
GCAGTTATTTTGATGCTCTTGAACACAGCCACCTTTGGTGTTTTTGGGTCGCCTTGTTAACGGCAAAAAGCACAGTTTAGGACGAGATTTACCATTGAACTACCTGCTTTATGTATCTTTTTGGGGATCTGACTAAATTCACATGGAAATGTGAGttataaatctgtcattctcattgaaagcaagtctgaaTGATAGATCTGTGTTTCCCGTTTTTACGTTTTgttcaccagcttcaaacagttgAAAATATAATATTTGGGGTTATGGAAAAGATcattcacagcggtttagatggtacaagtattctctacactatacttgcttgttttgtcacataaactgaaattagacgaactattcgaattttagcaacTAGGAAATGCCGGAGCGATTTCTGAATTGGTCATCTTTAATCATATTTATCATATCATGTAATCGCTTTTGCCACATTCCAATTGAGGTGGGAAATAAACTACAATGTAGGAAATTAATATTATTTGTAAATCAGTCAGacacaatttacccatgatacattACGGTTTTGAGCCTCGAACACGGCCATTGGTAACCAATCGGCGTAGCAGCAGATACACAAGTAATCACCAAACAACTTCTAGATGCTAACTATAGTGATGATATCAGCTGAAACTTGAACGAATAGGTGGCTTTCTATCTAGATATCTGTACCCACGACACCGAAGATTTGTTTGAAAAACGCAAGGAGGTAGTCAATTATGTGATTTGATGTTACGCCGATAGCTCGCTAAACTAGTAGCAACATTTATTCTAGAAACGCGCAACGTTAGCATACTGGATCTAGCTGCTACGTTAGTTAATGTGGTAACTTTTCTAACGCCACTGGAGTATTGTTAAGCAACATTTAGTGTAAATCATAACGCAAGTTTGACTTTGGCATATCTCAATTCTCATCTGTTTGGATTAATTTACACATACTAATCTACAAGCAAGGGGGCGGCTAGATACATCACCCCACTTTACCTCCTGATCTGCGGAAACAATGGCTAGTCCTGCCCCTCCACCAGCCACTGTCTCGACCGCCACTGAGAACCCCAGCAGCTCGACTGCTGCTGGGGAGGGTGGCAATCAGGACAGCACCTTCGAATGCAACATCTGCCTGGACACCTCCAAGGATGCGGTGATCAGTCTGTGTGGGCATCTCTTTTGTTGGCCCTGTTTACATCAGTGGTTAGAGACCAGACCTAACAGACAAGTGTGTCCAGTGTGCAAGGCAGGCATCAGTCGAGACAAAGTCATCCCACTATATGGCAGGGGAAGCACAGGCCAGCAGGACCCACGGGAGCGAACGCCTCCTCGACCACAAGGACAGAGGCCAGAGCCAGAAAATCGTGGATTTCAGGGGTTCGGCTTTGGAGACGGAGGATTCCAGATGTCTTTTGGCATTGGTGCCTTTCCATTTGGCATTTTCTCTACAGCTTTTAACATCAATGATGGAAGACCACACCCAGGTACTTTAGCTGTCTGCCCCTGGGACCCCCCAGCACATGGATGAACAGTTCTTGTCCCAACTCTTTCTAATTGTGGCTCTGGTGATTGTGTTTTGGCTACTAATCACATAAATGTCTGGGCGGCCAGGACTAAGGCTCAATTTGGACAGTTCTTAATACTCTGTTTCCAGATACTTGTTTGATTTTGTACTTTTCCACATTCTAAGTATTGTCCTCTGAACTTGCTGTTGGTTTATTTTCAGTAATTGAGATTAAACTGTTTGATTACATCTGTACTATGAATCCTACAGAAGTCTTAAAATGGCCCTACCTCTTCATTTCCATCAATGGTGTGTTTAATAGACAAAGTTTCCTTGGCTGGCAATATAGAACCAGATTTTAAAAGAAAAAAATGGCAAATCAGTAAATGTAAGGTATCACCCTCTGTGTTTGTATGGATGTAGATTATGAGCAGTATGACCTGTTTCTGAACTGAATATCAATTCGGGAAGAGATGCATAATTGGCGATAGACTTTTAAATTGTTGACACAATTGCCTTTTGAGTAACATTACCAGTATGCAGCCATTTTAACAATACAGTAAGTAGGACATTGTGTGGTGTCAGCAAGGGAATAGTCCAAAGGAGCAGTATTGATATGGGTTTAAGTTATTGAATAATTAACTGGTATGTCCTCTGTTGCCATAGGAGCTATTTTGTTAACTATTTCTCATGTTTCAGAAAATAAGCTTACAATTAAAGGAGCTATTTTTGGTTGAAGGATAGTCATTGTCTGCCACTAGTAAGACTATTATTTAGTACAAATGGAAATGTAGAATTCTAATGCATATATAATAAAGAACTTGGGATGTG

Function

NR:

description
E3 ubiquitin-protein ligase RNF185-like

GO: NA

KEGG:

id description
K10666 RNF5; E3 ubiquitin-protein ligase RNF5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937198.1 False 1516 mRNA 0.43 7 21774434 21777732
XM_036937199.1 True 2341 mRNA 0.41 6 21774440 21777732

Neighbor

gene id symbol gene type direction distance location
LOC110537190 iscua coding upstream 8194 21760881 ~ 21768970 (+)
LOC110537189 LOC106568211 coding upstream 15669 21755294 ~ 21758765 (+)
LOC110537187 LOC106568201 coding upstream 21920 21730306 ~ 21752514 (+)
LOC110537186 LOC106568203 coding upstream 52001 21698762 ~ 21722433 (+)
LOC110537185 LOC106568207 coding upstream 81595 21685358 ~ 21692839 (+)
LOC110537195 LOC106568209 coding downstream 18613 21796345 ~ 21805989 (+)
LOC110537193 idd coding downstream 28467 21806199 ~ 21826261 (+)
LOC110537199 LOC106568222 coding downstream 74386 21851548 ~ 21862294 (+)
LOC110537201 LOC106568226 coding downstream 117591 21895323 ~ 21936857 (+)
LOC110536818 LOC106568230 coding downstream 251526 22029258 ~ 22038032 (+)
G1048399 NA non-coding upstream 4147 21770086 ~ 21770287 (+)
G1048388 NA non-coding upstream 40661 21733555 ~ 21733773 (+)
G1048268 NA non-coding upstream 47986 21723297 ~ 21726448 (+)
G1048385 NA non-coding upstream 54694 21719416 ~ 21719740 (+)
G1048407 NA non-coding downstream 8110 21785842 ~ 21786052 (+)
G1048377 NA non-coding downstream 49981 21827713 ~ 21828270 (+)
G1048419 LOC106568221 non-coding downstream 57994 21835726 ~ 21835994 (+)
G1048429 NA non-coding downstream 73056 21850788 ~ 21851359 (+)
LOC110537158 LOC106568186 other upstream 1082692 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1262915 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1480583 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1627020 20144179 ~ 20147414 (+)
G1045418 NA other upstream 2808492 18965568 ~ 18965942 (+)
G1048417 LOC106568221 other downstream 55362 21833094 ~ 21834812 (+)
G1049502 NA other downstream 748209 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 951198 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2399698 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3574852 25352530 ~ 25719607 (+)

Expression


Co-expression Network