LOC110537196 (LOC106568212)


Basic Information

Item Value
gene id LOC110537196
gene name LOC106568212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21804693 ~ 21805631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110537196
ATGAACGACTCACTGGTGCTTAAGAAACGGGGCTATACATGAGGCATCAGTTTAGGCGAGGGTCGTACGCCAAAGTATAATCCGCTTATTCCCGAGCGTCTGAAGACCAATGTGGCAATCAAAATTATTAACAGAAAAAGGGCGCCGCCGGATTGTTTTGAGAAGTTCTTGCCCCGGGAACTGGACATTCTTGCATCCCTAAACCACCGCAACATCGTCAAGACCTTCGAGATCTTCAGAAGGCAAGGTGTACATGATTATGGAGCTGGGTGTGCAAGGGGACCTACTGGAGTTCATCAAATTCAGGGGTGCCTTGCCTGAAGATTTCACCAGAAAACTGTTCAAACAGCTGTCAGTTGCAATAAAATTCCCACACGCCCTAGATGTTGTTCATAGAGACTTGAAATGTGAAAACCTGCTATTGGACCAAGACTTTAATCTCCAAGTGTCAGACTTTGGTTTCGCCAGGAGGATCAAATATGAGGATGGACAAATGATTCTCAGCAAAACGTTCTGTGGCTCTGCAGCCTATGCATCACCAGAGGTATTACAGGGGGTCCCATACAACCCCAAAGTGTATGACGTTTGGAGTATGGGGGGTCATTCTATTCCCTATGATGACTCCAATATCAAAAAGATGCTGAAGATTCAGAAAGAGCATCGCATTGATTTCCCACACAGCAAAGCTGTCCCAACAAAGTACAAAGGCTTGATATATCGCATGCTTAACAACAATGTGGCCCAGAGGGTAGAGATTGACGATGTCCTTGAGCATGTATGGGTGCAGTCCAAATCACATGATGGTAGTATGAGACGGGAAGATGGGCCTTCCACATCGGAACATCCCTGCTGATTCCTGATGTTGAAGTCCTGGATTTATTCCACTTGAATAGTTCATAATAAATGGAACATACATATTTGTCAAGAAGAACCATATAG

Function

NR:

description
PREDICTED: testis-specific serine/threonine-protein kinase 1-like

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110537196 True 939 mRNA 0.45 1 21804693 21805631

Neighbor

gene id symbol gene type direction distance location
LOC110537191 LOC106568213 coding downstream 24245 21777869 ~ 21780448 (-)
iscua iscua coding downstream 35735 21766027 ~ 21768958 (-)
LOC118937645 NA coding downstream 69248 21729670 ~ 21735445 (-)
LOC118937644 LOC106564323 coding downstream 135226 21667423 ~ 21669467 (-)
cry5 LOC106568206 coding downstream 149448 21645814 ~ 21655245 (-)
LOC110537198 LOC106568221 coding upstream 23527 21829158 ~ 21852005 (-)
LOC110537200 LOC106568223 coding upstream 59067 21864698 ~ 21872628 (-)
LOC110537204 LOC106568227 coding upstream 91473 21897104 ~ 21900861 (-)
LOC110537202 LOC106568228 coding upstream 137523 21943154 ~ 21966665 (-)
LOC110537205 LOC106568229 coding upstream 171715 21977346 ~ 22021967 (-)
G1048932 NA non-coding downstream 18075 21786399 ~ 21786618 (-)
G1048910 NA non-coding downstream 77296 21727190 ~ 21727397 (-)
G1048908 LOC106568203 non-coding downstream 83929 21720128 ~ 21720764 (-)
G1048906 NA non-coding downstream 85611 21718835 ~ 21719082 (-)
G1048904 NA non-coding downstream 88651 21715837 ~ 21716042 (-)
G1048965 dgcr2 non-coding upstream 14086 21819717 ~ 21821054 (-)
G1048883 NA non-coding upstream 21891 21827522 ~ 21828763 (-)
G1048982 NA non-coding upstream 82569 21888200 ~ 21888438 (-)
G1048931 NA other downstream 19136 21785191 ~ 21785557 (-)
LOC110537166 srsf9 other downstream 867792 20933954 ~ 20938307 (-)
LOC110537162 LOC106568189 other downstream 938612 20862558 ~ 20888980 (-)
G1047473 NA other downstream 1102653 20701540 ~ 20702040 (-)
LOC110537156 LOC106568185 other downstream 1205266 20488123 ~ 20599476 (-)
G1048983 NA other upstream 83907 21889538 ~ 21889869 (-)
G1049013 LOC106568226 other upstream 125552 21931183 ~ 21931785 (-)
G1048996 NA other upstream 131700 21937331 ~ 21938200 (-)
G1048995 NA other upstream 132815 21938446 ~ 21942996 (-)
G1049089 NA other upstream 311431 22113948 ~ 22178642 (-)

Expression


Co-expression Network