LOC110537199 (LOC106568222)


Basic Information

Item Value
gene id LOC110537199
gene name LOC106568222
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21851548 ~ 21862294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034913.1
AACTGCAGTATGCAAAccagctcccctctctcttcctgatgACAGGATTGCAGTCAAATCCCCCACCCTCGAATTTAAGATATCAAAAATAAACCTAAACGACATAACCTACTGCCATGGAAATCTTGTCATTTAAAGAAGTATGCTCCGTCTGTGTTTGAGAAATATGTCACCACAGTCACGTATGGAGGGAAAGAGATTCGGCTCAACCTCTATGACACAGCTGCACTGATGCAATGACAAGCAGCAGCGTTGCAGAAAGCTGCTGTGACAGAGGATGTGGTGGAGGCTCATCTATAGAAATAATGTTTGTAACTGTA
>XM_021623050.2
GCTCAAATTATTGAAGACCATGTTTTTGCTATTATTGAAGCAGCTAGAGCGGAAGTAATGTGAAAATAAAAAAGTGTTACCCAAATGTCTTATTCTATGACCGACAGAGCACTGTTAAATCCGACTGAATCATAGTATAAAGGCTTGTTGTATGGCAAAGCCGACCAGCTGTTATTACGCAAGCAGAGAAGGAACACATTAAAGCACACCCAGGAAAAAAAAGGGAATGGGCCTCTTGTGCAGAAGACCGACTGCTCGCAGCACAAAGTATGCTCCGTCTGTGTTTGAGAAATATGTCACCACAGTCACGTATGGAGGGAAAGAGATTCGGCTCAACCTCTATGACACAGCTGGCCAAGATGATTACGATCGTTTGAGGCCACTCTCCTACCAGAATGCCAACCTGGTGTTAGTTTGTTATGATGTGACCAACCCCACCAGTTTTGAAAATGTCTTAATCAAGTGGTACCCGGAAGTGAACCACTTCTGTCGCGATGTTCctgtcattctgattggctgtaaGACTGACCTGAGGAAGGATAAGGAGCGTACCAGGAGGCTCAAAGCCATGGACCAGGCTCCCATCACTTACACACAGGGTGAGGAGACCAGGCGGCATATGAGTGCTGAGCTTTATCTAGAGTGTTCAGCCAAATACCGGGAGAACGTAGAGGACATTTTCAGAGATGCCACCAAAAAAGCCCTGGCATCAAGCCGCAGAGCAAGACAACGTACGAAGAAGAGGCATTGTGTCATCCTGTGACCTCGTTCTAGTGAAAGGACAGAGGCTTGAAGTCCATTGACACAACAGGGGACACTGTCACTTACATGCCAAAGCTACACATTCTGCTGCTTGTCTATTATAAACAACTGCTTGCCACATCCTGGGTCATCCTAATTCAATTTCAAGAAGAGCCTGTTCTATCCCCAACCAATTCATGCCTTTGGGATCTGAACAATGATATTGAACACTGAACTTATATCTACTAAGATCTGCTAGGATAGAGATGGAATTCCTGCTAGTTCTATGGGCGCAAGGTCTATCCTGGGATTCTAGAGTGGTTTTGTTAATTACTAGCTACGTTAGACCAGGGTGTAAATTGGCATATAAAAGCAGATTGAGATTGTACTTCATATACCTTTTTTTCAAATATCCTTTTATCAATTACTGAATTTATATTTGTACTTTTATAAAGAACTTGTTATGCCTATT
>XM_021623049.2
AACTACTCAGAACTCTTCTACAGCCCACTAAACACACCTTTCTAAATAGAGGAAGTGGCTCAGTGTGAGCCTCAGCCCCACCCAGTGATGTGATGGAACAGGCCAGATGACTACAGagcggtagagagcgagagagagagcgagcagctGTAGACTGACTCTATTGCGTGACTGAGCTTTTACCACAGAGACGCTTTCAGTGAACAAATTGATTAGGAAGAGAAGGATGTTCAGGGTCACTAGGAAATAACTGAAGTTGGAAAGGACCATTAAGTGGTGAACAGAGCAGAGTGAGACACCTGTTCAAGATGAGACTGAGCTTGGTTTGTTCCTCTTGTTGACACTCATTCTTCCCACTTAGCCAGGTTCTCATTATAAGTTAATTGGGTGGAACTGACATGTGTTCAGACTCAGTTGGGAGGGACTGACTTTATCCTGACTTCTGTCTGACTGCGACCCGTTGGACTCTAGATATGACACAGAATGGTACTATGATTAGCAATGGCAACGCTAAGAAGGGAGAAGAACTAAAAATTGTTATTGTGGGTGATGGGGGATGTGGGAAAACATCCCTTCTAATGGTGTATGCCAAAGGAGACTTTCCAGAGAAGTATGCTCCGTCTGTGTTTGAGAAATATGTCACCACAGTCACGTATGGAGGGAAAGAGATTCGGCTCAACCTCTATGACACAGCTGGCCAAGATGATTACGATCGTTTGAGGCCACTCTCCTACCAGAATGCCAACCTGGTGTTAGTTTGTTATGATGTGACCAACCCCACCAGTTTTGAAAATGTCTTAATCAAGTGGTACCCGGAAGTGAACCACTTCTGTCGCGATGTTCctgtcattctgattggctgtaaGACTGACCTGAGGAAGGATAAGGAGCGTACCAGGAGGCTCAAAGCCATGGACCAGGCTCCCATCACTTACACACAGGGTGAGGAGACCAGGCGGCATATGAGTGCTGAGCTTTATCTAGAGTGTTCAGCCAAATACCGGGAGAACGTAGAGGACATTTTCAGAGATGCCACCAAAAAAGCCCTGGCATCAAGCCGCAGAGCAAGACAACGTACGAAGAAGAGGCATTGTGTCATCCTGTGACCTCGTTCTAGTGAAAGGACAGAGGCTTGAAGTCCATTGACACAACAGGGGACACTGTCACTTACATGCCAAAGCTACACATTCTGCTGCTTGTCTATTATAAACAACTGCTTGCCACATCCTGGGTCATCCTAATTCAATTTCAAGAAGAGCCTGTTCTATCCCCAACCAATTCATGCCTTTGGGATCTGAACAATGATATTGAACACTGAACTTATATCTACTAAGATCTGCTAGGATAGAGATGGAATTCCTGCTAGTTCTATGGGCGCAAGGTCTATCCTGGGATTCTAGAGTGGTTTTGTTAATTACTAGCTACGTTAGACCAGGGTGTAAATTGGCATATAAAAGCAGATTGAGATTGTACTTCATATACCTTTTTTTCAAATATCCTTTTATCAATTACTGAATTTATATTTGTACTTTTATAAAGAACTTGTTATGCCTATT
>TU1194777
TCTCATCTTTCACATGGTACACCATCTAGTTACACAACAGAGACGTTTAATACCATGAAGAAGTATGCTCCGTCTGTGTTTGAGAAATATGTCACCACAGTCACGTATGGAGGGAAAGAGATTCGGCTCAACCTCTATGACACAGCTGCACTGATGCAATGACAAGCAGCAGCGTTGCAGAAAGCTGCTGTGACAGAGGATGTGGTGGAGGCTCATCTATAGAAATAATGTTTGTAACTGTAT

Function

NR:

description
PREDICTED: rho-related GTP-binding protein RhoF-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034913.1 False 320 mRNA 0.44 3 21852118 21858829
XM_021623050.2 False 1213 mRNA 0.43 5 21853627 21862294
XM_021623049.2 False 1556 mRNA 0.44 5 21856706 21862294
TU1194777 True 243 lncRNA 0.44 3 21851548 21858830

Neighbor

gene id symbol gene type direction distance location
LOC110537193 idd coding upstream 25857 21806199 ~ 21826261 (+)
LOC110537195 LOC106568209 coding upstream 46129 21796345 ~ 21805989 (+)
LOC110537192 LOC106568218 coding upstream 74386 21774434 ~ 21777732 (+)
LOC110537190 iscua coding upstream 85878 21760881 ~ 21768970 (+)
LOC110537189 LOC106568211 coding upstream 93353 21755294 ~ 21758765 (+)
LOC110537201 LOC106568226 coding downstream 33029 21895323 ~ 21936857 (+)
LOC110536818 LOC106568230 coding downstream 166964 22029258 ~ 22038032 (+)
LOC110537207 LOC106568232 coding downstream 209667 22071961 ~ 22115724 (+)
LOC110537208 LOC106568233 coding downstream 260417 22122711 ~ 22133603 (+)
LOC110537209 LOC106568235 coding downstream 289301 22151595 ~ 22157870 (+)
G1048429 NA non-coding upstream 759 21850788 ~ 21851359 (+)
G1048419 LOC106568221 non-coding upstream 16124 21835726 ~ 21835994 (+)
G1048377 NA non-coding upstream 23848 21827713 ~ 21828270 (+)
G1048407 NA non-coding upstream 66066 21785842 ~ 21786052 (+)
G1048399 NA non-coding upstream 81831 21770086 ~ 21770287 (+)
G1048447 NA non-coding downstream 74650 21936944 ~ 21937162 (+)
G1048443 NA non-coding downstream 75021 21937315 ~ 21938200 (+)
G1048513 NA non-coding downstream 178810 22041104 ~ 22043798 (+)
G1049249 LOC106568236 non-coding downstream 410724 22273018 ~ 22290074 (+)
G1048417 LOC106568221 other upstream 17306 21833094 ~ 21834812 (+)
LOC110537158 LOC106568186 other upstream 1160376 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1340599 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1558267 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1704704 20144179 ~ 20147414 (+)
G1049502 NA other downstream 663647 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 866636 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2315136 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3490290 25352530 ~ 25719607 (+)
LOC110537260 LOC106567764 other downstream 3967467 25796348 ~ 25836166 (+)

Expression


Co-expression Network