LOC110537202 (LOC106568228)


Basic Information

Item Value
gene id LOC110537202
gene name LOC106568228
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 21943154 ~ 21966665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623059.2
AATATTCAAGCCATCAGGTGAAAATCGTGCAAAACATAGTAGATACTGTATTTGTTTCCATTAGAGGTCTTATTTTTTGTGATAATCATAGGCTAATCAAATGAACATTCAGAGGTAGCTAGGCTCTATAATTAGTTGTAGTGCAGTGAAGTGAAGTGATGGATGGGCAGCTTGTTCGAAGATTACATCATAGCCTACTGGGCTACAACTCAACTCTGCACTATGCAGTAATTTAACTATCACCCCAAAACTTGTCGCAACAAAATGAAGTCAACATCTTAATAAAAAAAAGCTGCAGCAGCAGTATTGCATAAATATACATTATCTAAATTAAATATCGATAGTGCACGGCGGATTGCCCGTATCAAGACATGCGCGTACCTACGCATAGCTCAGAACGCCCACTATGCGGCAATTGAAAAGGCGATTGGCTGCTAAAGATAACCGTACCTCCGGTTATTTCGTGATTGGTTGAGGGTGACTTGTACATTACGTTATGCCTATTCTACAAGTACACAGGGAGCTTCTGAAAAGGAAGACGTAATGGTGTGATTCCTTGTGTCCTTGCAATGGTCATCATTCTAATATTCCACAACAAATTCCACAACCGGGAGTCAGAATGAAGGGTTGCAAACTCTGATTTTACGGATACATGTATAAGGCGGGGGCATCGTCCATGTGGGCGTCATGCTGTGGGCTGCTGAACGAGGTGATGGGCACAGGGACGGTGCGCGGGCAGCAGCCAGGGTTTGGGACCGGAACGGGGCCCTTCCGCTTTGCCCCCAGCGCCGGGTACTCCACATATCCCCCCACCAGCTCAGGGAGTGCAGGTCAGCTCTGCAAGGCCTGTGGACTGGCCTTCTCCGTCTTCAGGCGCAAGcacatatgCTCGGACTGTAAGAAAAGTTTCTGTGCCATGTGCTCGGTGCTGCAAGAGAGCCTCCGCTGCTGCACCACCTGCCACCTCCTGCGCGGAACGGCCTTCCAGAGACCACAGCTCATGGCGCTGCGTGTTAAGGACCTGCGCCAGTACCTGCTGCTGCGCAACATCCCTACAGACACCTGCAGGGAGAAGGAAGACCTGGTGGACCTGGTGCTCTGCCACCAGGAAGCTGGAGAAAGCACCTTGACACAAGGAGGTgtagaggaagatgaggaggaggaggaagaagaagaagaggaggaggaggatgcagacacagacagcctgCACTCGCTCCCCCACTCCCTCCACGCCTCGCCCCCCTCAGCCGCACACCGCTCCGCTTCAGAGCagttgtctctctccacctcggaGCAGTCGGCTCTCTCCGCCTCTCAAGGAGGCTCTCCTCTCAGCCGGAGTGACAGCTCAGGGACTGCTCAGAGCCAGGAGCATGGGGGAGCTCCGACCATCCCACTCCTTCACCTGGAACCTGCCAGTGAACCTATCATAGAGGTCAGTCCAGTGACACAGAGGAGAATACGGGCCTCTCTATCTGACCTGGACAACGAAGGGGACATTGAGAGCCTGTCTGTCCGGCAGCTCAAAGAGATTCTGGCCCGTAACTTTGTCAACTACTCTGGCTGCTGTGAGAAGTGGGAGCTGATAGAGCGGGTGCATCGGCTCTACAGGGAGAACGAACAGAACAGGAAGTCCATGGAAAATGTCAGCAACATCAACAGCATGTCTGCAGTGGTGTCATATCCTCCGCCTATCTGCAATGGTGCAGTGGAAGACAGTGTGAAGGCTCAGCTGGCCTCTGATGACCACCTATGTCGCATCTGCATGGACGCTGTGATCGACTGTGTGCTGCTAGAGTGCGGTCACATGGTCACCTGTACCAAATGTGGGATGAGGATGAGCGAGTGCCCCATCTGCAGGCAGTACGTGGTGCGGGCCGTGCACGTCTTCAAGTCTTAACTCTGCCTTGAGCGTGCATGTCAGCCAAGGACATTGAAGCTGTGACGTAGTGTGTGCATATGCTTGAAAACCTGAGGGAGTGTGAATGATTTTGCAAGTTTCCAAGGACTTAATGCTACAGCAGATGTCCACATCCTCCAGTCCAAATGACATGCAGAGCAGACAGCTTCACACAGCCTGACTTTTACTACAGCTACTAGAACTACAAGAGCCCCACAGGAAACTGCTCTGTCGTGTCTGGATCTCCACTGGCTCCAGGACACTGACCTTCTGTCTTTAGTGTGATACACACTGAATTGTTTCACAAATAACTCTCCAATATCTTATTTTACAGTGCTTCATGTCAATTagttttttacttttaataaaCCATGAAGCGGAATTGGTCCATCAGGGCCGGTATACCGAACGCGGACACAGGGCTTGTGCCCCGGGGCCCTGACCTTCCTCAACCAAATTTGTAttattacatttttggggggttgtgGGTCAGTGGGCCCCCCAGATTGCAAATAgtgtaaaattgcaggaaattagctttaaaacggaAACATATTCTCTTAGCCTCATGATAAAATGTGTAGAAGGAGGGGGGAGTGCCTTGAGGTCGGTGCCCCAGGGTTCCAAATGCAGTAGTCTGGCCCTGGGTTCCATGGATCCTTGAATTGGATGTTTCATGGTGAGTAGGTATTAGGTGATTTAAGGTGGAGATCATTATGATGTCCCAGGGTTAGAGTCAATATGGTTTACACACTCataccacaccaggctatactaTACGTATCTCCTTCAATGTTCTTTAGTATGTGCAATATTAAAAAATAGACTTCTATGTCTGTCTATGAAACTCATCTGAGAAACTCAACCAGGCTGCATGTCTCTGTGCTGTTCCattctatatacacacacacacacacacgcacacgcacacacacacacgcccgcgcacacacacacaggggagggtGTTTTAGGTGCCAAACTTCATACCACAACTACATTACTGATGTCTGATTGCTGTTTCTATGCCAAGTGTCACTCCTCACTTCAGACCATGCATTGTAGATTTGAGCAGCATCCAACCCAATCAATATGTAAACCATCAAGCTCAGTGATTGGTTGAATTGTAGGGAAGCTCTTGAGCCACATGCTATGGGTTATAGGGACTTCAGTTCAAGGCTGTCCAACCCATGTTCTCCTTGCATGTGTTGAATCAGTCACAAGTGATATCACATTATGATTAATGTCTATGTTGATGGTCTTGTTTGGTTTAGATGAGGCTCCTGTCTACTGTGGTAACATACCATACACTGTGGCTGGGTCATCCCATGCTTTACGTTCCTATGCTCTTCGTCGGTGTATCTTTTATTAAAGTCGGGCATGACTGACAATGTGTCTGCTACTTAGCTTAATTAAGCAATATCATTCCATTACTTTTCTTAGGTGTGTTGTCCATTGGCTCAGTGTTCACCTCTTGAAGGTGACAGGTGCTAATTCCTCTGTTCTGAGCTCATATTTAAACATCTTTTATCACGTTGTGGATTTGTCTTTTAATATCTCTTTTCAAGAGAAGAAAAGGATGCATAAACTCAGTCGAAGTTGATTTGTTTATACAAATATAACTTCTGTTCTTTCATGAAATTATATTTATTCAAATGTCTATTGAAAAAAAAAGTATCTACTAATGCATGTAGATCGTTAGACAAAAAGCTTATTGCTGTAAAATAATTGCATATGATATGTAAGCtattgataaatatatatttttccattTGCTTTGGATGTCGTAATATAATTTATTAGCATTTGATATTttaagaggctgaataatttttttcAGAATGTAAATTCCCTTAATTTGATCAAATTAATATGACTCCAATCAAAAACAGAGAGATCACTGATCATGACATTTCCCCATTAAAGTTCTCATTTTATTTTGGAGCATTTCTTGTCCTTACCTGCTAGGGGATTCAAAACCTTCTGAATATTTGTACATCGCACACGGTAGCGAACACTGTCACTGTGTTTACATGTATGTTTATAATAATGCTGCGATATCTCAGATGTCACTTGTAGGCAGCTATATGATGTCAAAGTAGGATGAGTTATAGCTATGAGCACTCTATGGAATCCTGGAACTTTGTATTTTGGAATGTTGAACTTTTTATTTTGGTAATTACAAGTATTTAATAGATTTAATAAAAATACTGTACCATA

Function

NR:

description
E3 ubiquitin-protein ligase RNF34-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623059.2 True 4123 mRNA 0.45 9 21943154 21966665

Neighbor

gene id symbol gene type direction distance location
LOC110537204 LOC106568227 coding downstream 42293 21897104 ~ 21900861 (-)
LOC110537200 LOC106568223 coding downstream 70526 21864698 ~ 21872628 (-)
LOC110537198 LOC106568221 coding downstream 91149 21829158 ~ 21852005 (-)
LOC110537196 LOC106568212 coding downstream 137523 21804693 ~ 21805631 (-)
LOC110537191 LOC106568213 coding downstream 162706 21777869 ~ 21780448 (-)
LOC110537205 LOC106568229 coding upstream 10681 21977346 ~ 22021967 (-)
LOC110537206 LOC106568231 coding upstream 72477 22039142 ~ 22050714 (-)
LOC110537211 LOC100136462 coding upstream 248738 22215403 ~ 22226944 (-)
LOC110537212 LOC106568263 coding upstream 300666 22267331 ~ 22270536 (-)
LOC110537213 LOC106568236 coding upstream 305376 22272041 ~ 22293724 (-)
G1048998 NA non-coding downstream 5952 21936952 ~ 21937202 (-)
G1048997 NA non-coding downstream 6351 21936248 ~ 21936803 (-)
G1048982 NA non-coding downstream 54716 21888200 ~ 21888438 (-)
G1049040 NA non-coding upstream 15844 21982509 ~ 22001469 (-)
G1049095 NA non-coding upstream 115162 22081827 ~ 22139980 (-)
G1049107 NA non-coding upstream 135220 22101885 ~ 22106835 (-)
G1049089 NA non-coding upstream 147283 22113948 ~ 22178642 (-)
G1048995 NA other downstream 158 21938446 ~ 21942996 (-)
G1048996 NA other downstream 4954 21937331 ~ 21938200 (-)
G1049013 LOC106568226 other downstream 11369 21931183 ~ 21931785 (-)
G1048983 NA other downstream 53285 21889538 ~ 21889869 (-)
G1048931 NA other downstream 157597 21785191 ~ 21785557 (-)
G1049389 NA other upstream 370421 22337086 ~ 22340509 (-)
LOC110537218 LOC106568105 other upstream 577513 22540032 ~ 22546807 (-)
LOC110536820 LOC106603249 other upstream 641196 22607858 ~ 22654480 (-)
G1049722 NA other upstream 722496 22689161 ~ 22689597 (-)

Expression


Co-expression Network