LOC110537208 (LOC106568233)


Basic Information

Item Value
gene id LOC110537208
gene name LOC106568233
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22122711 ~ 22133603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623075.2
cctcccctctcggGGCACTGCAGACCAGACTCAGgtttaaacagagaggattagctCGCAGTATGAGGTCGATGGTTGCAGACAGGGAGTCATGCTAATGattgatgatgagtttctcataTACGTTTTCCTTGTTGGAGCCCGCCAAGTTAAAAAGAAGGCAGTCTCATCCCTTTTGCAAAGGAACCATAAAAAACAACCTATACAAACAGACTGGAGGTTTACCCTTTTTCTTTTGAAGAATGGATCAAGTTGAGGACTGAAGGTTTGGATGCTCTGACATTACTGGATCCTTTATTATAGTCTTCATGATGAGATCAGTCTGCTCTCCTAGACATTGACTTGAGCTTCCCCAGGCCCGATGTGCCCATGAAGCCCTTGTTTCAGTGCAGGCTTCAGAAGCTGAGGCTATAAAGGGACAAGAGGACTAATCTGCAGCCTTAGTCTTGGTTCCTGGACTTCTCTTTAGTCCTTTATCAGTCCTCCCTGTTCCCTGCCATATCCCCTcaccactccactgcaccacagccCCGGCTTCACCTGTGGCCAACATGGGCTGGTTCCTCCTCCCATTTGATAACCTGCTGTGTATAGTCCTTGGTATATCCTTCACTGTGGGATTCAGCTCGCTGCTAGTCATAGTCGTGCCGGCCGTCCTTGGAGTGTCCATTGGGATCCGCAGACTGTACATGAAGAGTCTTCTCAAGGTCTTTGAGTGGGCTACTGTGCGGATGGAGAGAGGCGCAAAGGAGAAGAATCAACATCTTTATAAACCCTATAGTAATGgtATCATAGCTAAAGAACTGTCCTCTCTGGAGCAGGAGATCCAGGAGCTCCGTGCCAGCGGCACCACTCTGAGCTCTGAGCCTGAGTTTGAGATGGCCGACATCATGTATTTCTGCCGGCGGGGGGTGGAGAGCATCGTGGATGACGAGGTGACCAAGCGCTTTTCTGCTCAGGAGCTGGAGTCCTGGAACCTGCTGACCCGCAGCAACTTCAACGCCCGCCACATCAGCCTGCGACTCAGCGTGCTCTGGGGACTGGGTCTCTTCATCCGCTATGGCTTCCTGCTGCCACTCAGGGTTACTCTGGCAGCCTCTGGTATTGGTCTGCTTGTGGTCTTGACTACCATAGTGGGCTTCATACCAAGCGGCTGGTTAAGGACGTACCTCAGTGAGAAGATTCATCTGATGTCTTATCGCATCTGTGTCCGATCCCTCACTGCCATCATCACCTATCACAACAGTGAGAACAAACCAAAGAATGGAGGCATCTGTGTGGCGAATCACACAACTCCCATTGACGTCATCATCCTGGCCAATGATGGCTGCTATTctatgGTTGGCCAGATCCATGGTGGTTTGATCGGGGTAGTCCAGAGAGCCATGGTGAAATCCAGTCCCCACATCTGGTTTGAGAGATCTGAAGTCAAAGACCGCCACCTTGTGGCCGAAAGGCTTAGCAATCATGTAGCAGACAAAACTAAACACCCCATCCTCATCTTCCCAGAGGGCACATGCATCAACAATACCTCAGTGATGATGTTCAAAAAGGGCAGCTTTGAGATAGGCTGTACTGTCTACCCTGTGGCCATTAAgTATGACCCTAGGTTTGGCGACGCGTTCTGGAACAGCAGTAAGTTTGGGATGGTCAACTACCTGCTGAGGATGATGAGCAGTTGGGCCATCGTCTGCAGTGTCTGGTACCTTCCACCTATGAGCAGAGAGGAGGGAGAGGATGCGGTGCAGTTTGCCAACAGAGTAAAAGCAGCCATCGCCACGCAGGGAGGACTGGTGGACCTGCTGTGGGATGGAGGGCTGAAACGAGGGAAGGTGAAAAATACGTTCAAAGAGGAGCAGCAGAAGCTGTACAGCAAGGTGCTGGTTGGAGACCAGGAGGACCAAGGTGAAGACAGACCACaggaagatgaagaagaagaagaagaattagaAGAGGGGGACCAAAATGAAGACAGACCACTTGAAGATTACACACCCAGACCACTGGAAGACTGCTCTCTGAGACtacaagaagaagaggaggagagaggctcaGAGACACCAATGAAGGACCAATGAGGGTGGGGGTTCCATTCCTACCAGGTTATTAAGTGTCAGCGGAGCCCCACTCACTGTCTTGGTGAGGCACTAGACCAGAGGATTTATTGGATTGGAAGCCTTAAAGTAATTTCAATAACAATGAACTACTCAGAGACCATTTCAATAGCAATTAACTACTCAGAGACCATGTAGTGCAACTGAAACAGTATCATTTTCTACAGGCTGTAAGCCACATACTTTTGAGTTTGTGCTGCACTATGCACAGTCATTTTATGAATGTTAACTGTTTTAATACTGTATttaaatgtttatctttaatatTTTCTTTGTATTTATGCCATTTTGACCACTATATTTGGGTAATTTTGGGTAGTGCAATTAGGTCCCCCAAAACTTGATTAAAACAATGTATCAtacagaggacatgttaaacttAATAAAAttaatttcagcctgttttggccttccatggtgacatcaccatacAGGTaaattaatagaccaataagaaagagggtGCCAAATCTCCTGCCAATAACAGCACATTTGTacttttcccctccccactcagactacTCCCAGAcaatcctagcaaaattcttgcttgagaaattgccctttgctaagaagctattctTGTTAGTTTTCAAGTAAAATTTCAATTAAACtttttacccagaaattatttgatattgagataaaatggctgcattggaacttttaaagtaacagggttgacttaaCAGGATTGAAGTTTTCATCTTAAATTAGCCATAACATGTGTGCAATAGGGATGGGCAATTGAATGCATGCTTCAtcacaattattattttattttatttgtacatTTCTACCCTCTCTATCTATGGGGAAACATTCAGTTATCCACCACACAACACCAGAAAATGACCAAAAAGCTTTTACATTATGATTTGATGTCATAGTTTCTATAGAGAAAATATTTTATAAAAGGAATAGTTTAAATTAGAGTTCCATTAATGTAACAGGGTGGCCCCTAAAATGAGGGACAAATGTAAGTTATTCACTTATCGCGTGAAgtaaataataatcttcagaaatgactttgtcaaagcaataaaataactagggctttacaatgatggagaaatgtttgggttaagtgggttaaaatcctACTAGAAGTCTGGAAAACACGAGGGATATGTCAAAATGCTGAtttttggcactttagcaagtctttagTCAAATAAAAATCTGTTAACGTTAAATGGCactttaatataacaggctttttaGTATTGGTGCACAATTACAACTTCAAATATCAAAGGGAGGCAAAAGGCACTCTATTCGTGGAACGATCCATTTATGCATATTGTGAAAACAGGAGGAAAGGTTACAAAGCCACAGCAGACCAAATATGCAGATAATGGGTCAATATGTGTCACAGTCCTAGACAATAGAGAACATGACACGGAAGACTGTTACCATGTTATCTAAATAAGCTTTGTTGTACAATTAATGGTAAAATGTATTGCATTTCTAAAAGTTAACAATACTGTCATAAATTCAGTGTGTGTGAAATTAGGCTAAATATAAGCCCCACTGATAATTGTatcaaaatacactgaacaaaaatataaatgcaacacttaaagtgttggtcctatgtttcatgagctgaaataaaagatcacagaaaatgtccatatgcacaaaaagcttatttctc

Function

NR:

description
glycerol-3-phosphate acyltransferase 4-like

GO: NA

KEGG:

id description
K13506 GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623075.2 True 3774 mRNA 0.43 13 22122711 22133603

Neighbor

gene id symbol gene type direction distance location
LOC110537207 LOC106568232 coding upstream 6987 22071961 ~ 22115724 (+)
LOC110536818 LOC106568230 coding upstream 84679 22029258 ~ 22038032 (+)
LOC110537201 LOC106568226 coding upstream 185854 21895323 ~ 21936857 (+)
LOC110537199 LOC106568222 coding upstream 260417 21851548 ~ 21862294 (+)
LOC110537193 idd coding upstream 296450 21806199 ~ 21826261 (+)
LOC110537209 LOC106568235 coding downstream 17992 22151595 ~ 22157870 (+)
LOC110537210 LOC106568251 coding downstream 31827 22165430 ~ 22203378 (+)
LOC110537214 NA coding downstream 161384 22294987 ~ 22397615 (+)
LOC110539131 LOC106568265 coding downstream 272329 22405932 ~ 22417688 (+)
LOC110537216 bmp1 coding downstream 293026 22426629 ~ 22479982 (+)
G1048513 NA non-coding upstream 78913 22041104 ~ 22043798 (+)
G1048443 NA non-coding upstream 184511 21937315 ~ 21938200 (+)
G1048447 NA non-coding upstream 185549 21936944 ~ 21937162 (+)
G1049249 LOC106568236 non-coding downstream 139415 22273018 ~ 22290074 (+)
G1049329 LOC106568238 non-coding downstream 355632 22489235 ~ 22490285 (+)
G1049482 NA non-coding downstream 381801 22515404 ~ 22515603 (+)
G1049490 NA non-coding downstream 386568 22520171 ~ 22520381 (+)
G1049500 NA non-coding downstream 391571 22525174 ~ 22525504 (+)
G1048417 LOC106568221 other upstream 287899 21833094 ~ 21834812 (+)
LOC110537158 LOC106568186 other upstream 1430969 20667957 ~ 20694090 (+)
G1046929 NA other upstream 1611192 20509269 ~ 20511519 (+)
G1046823 NA other upstream 1828860 20282886 ~ 20293851 (+)
G1046724 NA other upstream 1975297 20144179 ~ 20147414 (+)
G1049502 NA other downstream 392338 22525941 ~ 22526232 (+)
G1049629 LOC106456187 other downstream 595327 22728930 ~ 22737666 (+)
G1051534 NA other downstream 2043827 24177430 ~ 24177934 (+)
LOC110537258 msi2h other downstream 3218981 25352530 ~ 25719607 (+)
LOC110537260 LOC106567764 other downstream 3696158 25796348 ~ 25836166 (+)

Expression


Co-expression Network