LOC118937646


Basic Information

Item Value
gene id LOC118937646
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22467396 ~ 22477003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034914.1
AGAGAAGAAGCGCATAAACATCTCGTTGCCGCTGGAGATGACTGGCGAGGGTTTCTTGATGCCACAGAAGCGTCCCAGACTAGGGGCCCGGCCATCCTGCCCATCGTAGATCTCCAGGTGGTCGTAGGCACACTCCAGAATTCTAGGTGGCAAAGCTAAAAGGGGAGAAGATCGGGAGAAAAAAGACGGATTGGATCCTGAAAAAGAGACCGCAATAATTGgacctgagccctaggaccatgcctcaggaccacCTGGCATGACGACTCCTCGCTGTcccctgcattgcttgctgtttggggttttaggctgggttgctgtacagcactttgatatatcagctgatgtaagaagggctatataaatacatttgatttgaaaatttgatttgaatctgATATGCTTTTCACCTAGTTTTTGTCCTTTAAAATGTTTCATTTATTTCATTCTATGACCCCAAACCCAACACCTAACTGTTCTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034914.1 True 481 mRNA 0.47 3 22467396 22477003

Neighbor

gene id symbol gene type direction distance location
LOC110537215 LOC105014916 coding downstream 68411 22361779 ~ 22398985 (-)
LOC110537213 LOC106568236 coding downstream 173672 22272041 ~ 22293724 (-)
LOC110537212 LOC106568263 coding downstream 196860 22267331 ~ 22270536 (-)
LOC110537211 LOC100136462 coding downstream 249139 22215403 ~ 22226944 (-)
LOC110537206 LOC106568231 coding downstream 416682 22039142 ~ 22050714 (-)
LOC110537217 LOC106568238 coding upstream 12202 22489205 ~ 22494114 (-)
LOC110536819 LOC106568266 coding upstream 19734 22496737 ~ 22497165 (-)
LOC110537218 LOC106568105 coding upstream 63029 22540032 ~ 22546807 (-)
LOC110536820 LOC106603249 coding upstream 130855 22607858 ~ 22654480 (-)
LOC118937648 NA coding upstream 147541 22624544 ~ 22625907 (-)
G1049429 NA non-coding downstream 23485 22443490 ~ 22443911 (-)
G1049428 NA non-coding downstream 24949 22442220 ~ 22442447 (-)
G1049425 NA non-coding downstream 27657 22439253 ~ 22439739 (-)
G1049366 NA non-coding downstream 162414 22304601 ~ 22304982 (-)
G1049212 NA non-coding downstream 212200 22254975 ~ 22255196 (-)
G1049473 NA non-coding upstream 27356 22504359 ~ 22504636 (-)
G1049492 NA non-coding upstream 43765 22520768 ~ 22520982 (-)
G1049501 NA non-coding upstream 48109 22525112 ~ 22525625 (-)
G1049503 NA non-coding upstream 48914 22525917 ~ 22526146 (-)
G1049506 NA non-coding upstream 53817 22530820 ~ 22531096 (-)
G1049389 NA other downstream 126887 22337086 ~ 22340509 (-)
G1049089 NA other downstream 342492 22113948 ~ 22178642 (-)
G1048995 NA other downstream 524400 21938446 ~ 21942996 (-)
G1048996 NA other downstream 529196 21937331 ~ 21938200 (-)
G1049013 LOC106568226 other downstream 535611 21931183 ~ 21931785 (-)
G1049722 NA other upstream 212158 22689161 ~ 22689597 (-)
G1050429 NA other upstream 766634 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 2077694 24554697 ~ 24555000 (-)

Expression


Co-expression Network