LOC110537218 (LOC106568105)


Basic Information

Item Value
gene id LOC110537218
gene name LOC106568105
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22540032 ~ 22546807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623091.2
CCCAGCCATAGATCTGTGTGTGCGCATGAGAAAgggaatagtgagagagaaagaggaagcgagagagagagtgagagagggagggaggaagagaggaagggagagggatagtTGGACAGAGTGCTGAACGTAGGGCAGTGCATCATTGTGTTATGATGTGagcagggagacaggaaggaggagagggaccaaagtaagaggaggagagagggaataaacTGAGAACGCAGCTGGACTACATGTCTAGTCTGAGGGAGCCAGATTAGTGGTGACTCAGAGCTTTTGGAATACTTACCAGAAGGGAATATGGCTTTGCACCACTGTTAGACTGCATAGTGTATGCTCATGTGAGTTTGTGGGTGCCACGGAGGGACTGAAAGGGAGAAGGAGTTCAACCTCATCAAAAAGGAGTCACCCAGTGCCCCCCTCCTCAAAGACTTGGAGTAAAGGAGTACAGGGGAGGGGGGCAAGGTGGAGAGGAGGCCAGGTGGAGAGGTGGGCCCCCACGTCTGGACGCAGAACACCTAAAGGACAAAGTGAAACGTGCCACAGCTCAACCCAAGGTTTGACAAATGCTGACAATGatgtgatggtgatggtggacaCAAGCTCTCCTGGGTTTTCAGGCCACTGAGTCAGTCGGCCAGGTGATGGGGAGACGGGCGGCTGACCTGACCACTCCTGTGCCAGTACTGGGAGTTCCTGCCCTGGTGGGGGTGCGTGGTTGGAGTACAGCAGGGGGGGAGAGGGCTGGGGGAGTGCTGCCACTGACATGGGGTCCCCACTGCAGTATCGGAGTGCAGACTTCACCCGGCATGAGAGCTCCACCCATCTTGCACGGGACAAAACTAACAGGCACATTCCCCAGTCAATCAGAAAGAAGCATTACTCCTACATGCAATGGCTACATCCCAAAAAAGGCAAAGGAAGAGGAGGGAATCAGACAGACTAAGAGTTTCAGACAAAGAGGTGTTCTTTCAAAACAGAGGAGTTTAGATTCCAAGACCAAAAAAGGTGTGACATTTGAAGAAATTTCCAGTGAACTTACAGAGAATGTGGTCTTCAACAAATGGAAAAGTGGGACTTATTGCTATGCCCGGGCAATCAAGACTAACCCACACCTTAAAGGGAGGCGGGACTTGCGCTACACAAATGGCAGCGTAGTTGACTCGGAGGCTATAGGAGGGATTTGTATTGATGGCAGTGATGAGGCGGAGCCTGTCTCGACCATGTCCTCTCGAGGAAGGGACCAATCAAAACCTAAAGAACATTCTGTGGCACATTCATATTGTGGGAATGCAAAACGACTACCTGCTCCCCCACCTCTCTGGATGCTCCAGGAAATGTGCAGACACTGTGGAGGGAGACAGACTGTGGTCCCTGGAGCTGGAGATGAAGATGCCAGTCTGGAAGTTAAGAGCACTTCCTCTGCATGCCCTGAAGGAACAACAGCCATGAAAACACCTATTTCACTCACAGACAGAAACCACCTTCTCCCTTCACATACTGAGAAAGAGAGGAACTCTACATGCTCCACTCCGAGGCTTGCAGACAGGGATCTGATACAAAGACAGCCGACACAAACAGAATCTCAATCCACCCACCCCCGCTGTAAACCCAtaatttacaacaacaaagacaGGAAGCCCAACCTGCCTGCAAACCCAGCGCCTGCATGGAAAACCAAAGATCTGAAACAGACTAATGGTTATACCTCACATTATACATACCCCCTGCATACCTCTATCAGAGACCCAGTAGAAACCCTAGTTACACCTTCACATACACACTCAGACAAGCCAACCCACCAAAGAACCATCTTACACACAAAATCTATTACAGTCACTAAGGCAACTATTGAACCCAGGCGTGCAGATGCCAACACCCTTGAGACCCCATCTCACTGGAGTAAAATTCCTCGACCGAAAATACTCAAAATGTATCCTCAGATCGCAATAGCCACCAGGGCAAACACGCCACACGCACACCGTAAACATCCAAAgacacccacacacccaaatacaCAGCCCAACCCATCAAACACATCATGTACATCTACTCACCCTTACCGTCCAAACACACCATACAGAACTTTTCCTCCAAGCCATGTTAACCCATCCCATGTTATTAGAGCCCCTAAGCCTGAAAACACAACACCACGGTCTAACACTGCTACAACATTACATAGAAGTGCACCCCCTTACCCTGCTAACACACACGCAACTAAACCCCTTAACTCTGCAAACTCACATACAGCTACACCTCCCACCCCTGAAAGCACACTGACGACAACCACAAAACTCCTAAACAGTGCTACTAAAACGATACATAGAACAACACTCCCTAGCCTCGCTAACACATTACATATAGCTACAACTCTAAAACCAGCAAACACACCATGCAAAGCCACTCTCTCTTACCCTTACAACCCATCACACACAACTACTCTCACAAGCTATTATAACCCATCACACACAACTACTCCCACAAGCTATTATAACCCAtcacacacaaatacacccaCAAACTATTATAACCCATCACACACAACTACTCCCACAAGCTATTATAACCCATCACACACAAATACACCTACAAAACCTTTGTTCCATACCCTTAACCTGTCAAACACATCACACACTCCCATTTCCCCTGACTCAGCTAATGCATCCCCCATAACACCCCCTAACGTTGATAACGCATCACATACAACTGTATCCTCTCTCTGTTCAAATGCCTTATGCACAGCTACGCAGCATCAGTCCTCATCCACGTCACTGACGATCTGTAGACCACTGATCATGACACAGATACACAACAATAAAACACCTGACCCATCAAACAGATCAACCACTAACACGCAGAATAACAGCACATTTATAAATACACATATTGAACAAACCGCTGCCCTTCACACCAGCTCTCATAACAGATTTGTTGTTGATCCAATAATGCATGCAAATGTATATGCCAAAGTATTGTCTCTGTATAACAAAAGTAGACACTGTAGTCCTGTCATCGTATCACAGACACATCAGGAAAGACACTCTGGAATATTCAATGCATCACAGGTCACTAACCTTCCAAAACACATCACTGAAATAAAGATAAACAAAGAATGGGAACAGCAGGGACACATTGTCACACAACATCAGGGAGACCTTTTCACAAACCTAAAACCTGGATCTGAGTGTCAGATACATTCTCACAAAGAGCACATTCCCTCTAGCATGTTACATACACGTGCAAATACCACATTTAGATTCAGCGTTGACAGGCAGATATACACAAATTATGCTCCAACTTCCAGCAcaccacagacacaaacagatcCTAAGCCCCTCATTGCATCAAAGACAAACACTACTGCACATGTCAAACCCATCACCGAAACACCAAATCACATAAACAAAGACTTCCGTTCCACACCaaccccacacaaacacacaagcccCACACACCGACTCATACCACAGGCCCGTCCATACACAATCACTGAACTCCTCACACACAAAGCCGTAAACCCCAAGTACAACCCCCTTTTGCCGCCATCACGCATGGCACACCTAGAATCCTACACCCTTACCCATTCCAATCAGACACACCAGATGATCCATCCAGTATTTTTGTTGTCAAGTACCATCCCACAACCCTCCCGAGACGACCCTAGGCTGGCTCACTCCCACCCGGCTGATACagacctgctgctgctgccccccTCCCCACAGTGCAGCAGGCCAGCCCCTTTCCATAGGAGGCTGCAGTGTGTGGAGGCCAGCCTGGCAGCCAACCAGGACAGGATCACTACACTTCTCAACATCATCCAAGACCTTGAGATGAGCCATGCTCTCAACATGGGTCGGCGAtgctacaggacaggacaggacctcCGGGAGTGCTCCACCTGTCAGAAGACTGCTTGTATCGTATATAGTGTGGAGTATGACTTCAGGCAGCAAGAGAGACGTTTCTTGGAGGTTTTGTATCCCCAGAGGGCTGACAACaacactcctccctccctgccccacAACAGCACCCTGCTGACAAACGCCATCACTAAGACCATGACCAAGTCCAAGGTTAAAAGCAAGAAGTTGTGCAAGATGCTTTTCCAATGGCTGCCAAGGACAATTCAGGGAACAAAGTCCTCCTTTCACCAACTCTCTCCAGATCATTTGAATTCCTAGCATGTTATTCATGAGGTATTGAGGTATCCCTGTAATATAAGATCTGAtggtgtgttcaagacaactgggaactctgttAAATACAAGGTCAAATCAAGATGTCAGTAATCTCCAGGTCGGAAAACCAGAGCTCTTGAAAGAGGCGGAATTCCTGAGTCGGAATTCTGAGTTAGATGAACGTTCCAAATGATTTTTCCCTGTCGGAGTAAGTTTTTCTGAGAGTTCCCAATTGTCTTGAGcacactgaagtcggaagtcagagatttccaagttcccagttgttttgaactcggCATGATGTCCCTATCACAGCAAGTAGCACTTGTCTTTGTAGAAGACACCTACATCCCTTCCTGTCCACATGATGGGTGTCCTGAAATCTGATTTGCTCCTTAATGACTGATTGACACCCTATTGCCCAATCATGACATAGCATGAACAGGAATTGCCCTTAGTAACTATAGACCTTTGCCCAGTCTAGCAACAGTCTATCATATGGAGAAAACTTCATCCCTCAGGTTAAAATCATGAACTTTCATCCAAAGCACATGCACTAGTTGTTGAACTAGATACAACATCCAAAAGTTTGCTAGATTGCAATCACTATTTTCAGAGCCTATTGTAGATGATAGTCCATATTCTATAGTATTTTATTGTAGCTAAGCATCAAGTgaagtgttgttgtcctcttaCAGATTCCCCTACCAGATTATCCCAGGGTCAATGTATATACATCATAATTTTGAAAAATAAACCAAAGCCCACAGTACATACTGTAAACATTTTCTTTTCATGTTTGATTAAATATCTTATCGCTGACA
>TU1196162
TTATGATGTGagcagggagacaggaaggaggagagggaccaaagtaagaggaggagagagggaataaacTGAGAACGCAGCTGGACTACATGTCTAGTCTGAGGGAGCCAGATTAGTGGTGACTCAGAGCTTTTGGAATACTTACCAGAAGGGAATATGGCTTTGCACCACTGTTAGACTGCATAGTGTATGCTCATGTGAGTTTGTGGGTGCCACGGAGGGACTGAAAGGGAGAAGGAGTTCAACCTCATCAAAAAGGAGTCACCCAGTGCCCCCCTCCTCAAAGACTTGGAGTAAAGGAGTACAGGGGAGGGGGGCAAGGTGGAGAGGAGGCCAGGTGGAGAGGTGGGCCCCCACGTCTGGACGCAGAACACCTAAAGGACAAAGTGAAACGTGCCACAGCTCAACCCAAGGTTTGACAAATGCTGACAATGatgtgatggtgatggtggacaCAAGCTCTCCTGGGTTTTCAGGCCACTGAGTCAGTCGGCCAGGTGATGGGGAGACGGGCGGCTGACCTGACCACTCCTGTGCCAGTACTGGGAGTTCCTGCCCTGGTGGGGGTGCGTGGTTGGAGTACAGCAGGGGGGGAGAGGGCTGGGGGAGTGCTGCCACTGACATGGGGTCCCCACTGCAGTATCGGAGTGCAGACTTCACCCGGCATGAGAGCTCCACCCATCTTGCACGGGACAAAACTAACAGGCACATTCCCCAGTCAATCAGAAAGAAGCATTACTCCTACATGCAATGGCTACATCCCAAAAAAGGCAAAGGAAGAGGAGGGAATCAGACAGACTAAGAGTTTCAGACAAAGAGGTGTTCTTTCAAAACAGAGGAGTTTAGATTCCAAGACCAAAAAAGGTGTGACATTTGAAGAAATTTCCAGTGAACTTACAGAGAATGTGGTCTTCAACAAATGGAAAAGTGGGACTTATTGCTATGCCCGGGCAATCAAGACTAACCCACACCTTAAAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623091.2 False 5008 mRNA 0.47 4 22540032 22546807
TU1196162 True 979 TUCP 0.52 2 22544178 22546657

Neighbor

gene id symbol gene type direction distance location
LOC110536819 LOC106568266 coding downstream 42867 22496737 ~ 22497165 (-)
LOC110537217 LOC106568238 coding downstream 45918 22489205 ~ 22494114 (-)
LOC118937646 NA coding downstream 63029 22467396 ~ 22477003 (-)
LOC110537215 LOC105014916 coding downstream 141047 22361779 ~ 22398985 (-)
LOC110537213 LOC106568236 coding downstream 246308 22272041 ~ 22293724 (-)
LOC110536820 LOC106603249 coding upstream 61051 22607858 ~ 22654480 (-)
LOC118937648 NA coding upstream 77737 22624544 ~ 22625907 (-)
LOC118937649 LOC106603247 coding upstream 92182 22638989 ~ 22641219 (-)
LOC118937813 LOC106604822 coding upstream 112808 22659615 ~ 22662980 (-)
LOC118937647 NA coding upstream 116476 22663283 ~ 22665618 (-)
G1049637 NA non-coding downstream 164 22539592 ~ 22539868 (-)
G1049510 NA non-coding downstream 6778 22533019 ~ 22533254 (-)
G1049506 NA non-coding downstream 8936 22530820 ~ 22531096 (-)
G1049503 NA non-coding downstream 13886 22525917 ~ 22526146 (-)
G1049501 NA non-coding downstream 14407 22525112 ~ 22525625 (-)
G1049656 NA non-coding upstream 4119 22550926 ~ 22551202 (-)
G1049658 NA non-coding upstream 6560 22553367 ~ 22553570 (-)
G1049666 LOC106568124 non-coding upstream 14345 22561152 ~ 22566910 (-)
G1049711 NA non-coding upstream 125957 22672764 ~ 22673062 (-)
G1049713 NA non-coding upstream 128635 22675442 ~ 22676180 (-)
G1049389 NA other downstream 199523 22337086 ~ 22340509 (-)
G1049089 NA other downstream 415128 22113948 ~ 22178642 (-)
G1048995 NA other downstream 597036 21938446 ~ 21942996 (-)
G1048996 NA other downstream 601832 21937331 ~ 21938200 (-)
G1049013 LOC106568226 other downstream 608247 21931183 ~ 21931785 (-)
G1049722 NA other upstream 142354 22689161 ~ 22689597 (-)
G1050429 NA other upstream 696830 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 2007890 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 2057473 24600309 ~ 24607820 (-)

Expression


Co-expression Network