Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536820 |
| gene name | LOC106603249 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 22607858 ~ 22654480 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protocadherin gamma-C5-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021622496.2 | False | 3478 | mRNA | 0.46 | 5 | 22607858 | 22628060 |
| XM_036937223.1 | False | 5114 | mRNA | 0.44 | 4 | 22607858 | 22638785 |
| XM_036937222.1 | False | 5173 | mRNA | 0.44 | 5 | 22607858 | 22638787 |
| XM_036937228.1 | False | 2768 | mRNA | 0.44 | 4 | 22607858 | 22641488 |
| XM_036937227.1 | False | 2590 | mRNA | 0.44 | 4 | 22607858 | 22641632 |
| XM_036937226.1 | False | 5023 | mRNA | 0.45 | 5 | 22607858 | 22650747 |
| XM_036937225.1 | False | 3129 | mRNA | 0.44 | 5 | 22607858 | 22652014 |
| XM_036937229.1 | False | 2724 | mRNA | 0.43 | 4 | 22607858 | 22654480 |
| TU1196151 | False | 2554 | TUCP | 0.44 | 4 | 22607861 | 22641599 |
| TU1196153 | True | 2581 | TUCP | 0.44 | 6 | 22607861 | 22641599 |
22,600,000
22,610,000
22,620,000
22,630,000
22,640,000
22,650,000
22,660,000
22,670,000
22,680,000
22,690,000
NC_048576.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537218 | LOC106568105 | coding | downstream | 61051 | 22540032 ~ 22546807 (-) |
| LOC110536819 | LOC106568266 | coding | downstream | 110693 | 22496737 ~ 22497165 (-) |
| LOC110537217 | LOC106568238 | coding | downstream | 113744 | 22489205 ~ 22494114 (-) |
| LOC118937646 | NA | coding | downstream | 130855 | 22467396 ~ 22477003 (-) |
| LOC110537215 | LOC105014916 | coding | downstream | 208873 | 22361779 ~ 22398985 (-) |
| LOC118937813 | LOC106604822 | coding | upstream | 5135 | 22659615 ~ 22662980 (-) |
| LOC118937647 | NA | coding | upstream | 8803 | 22663283 ~ 22665618 (-) |
| LOC110537219 | LOC106603252 | coding | upstream | 11182 | 22665662 ~ 22670678 (-) |
| LOC110537220 | NA | coding | upstream | 39219 | 22693699 ~ 22756982 (-) |
| LOC110537223 | LOC106568102 | coding | upstream | 115403 | 22769883 ~ 22779486 (-) |
| G1049666 | LOC106568124 | non-coding | downstream | 40948 | 22561152 ~ 22566910 (-) |
| G1049658 | NA | non-coding | downstream | 54288 | 22553367 ~ 22553570 (-) |
| G1049656 | NA | non-coding | downstream | 56656 | 22550926 ~ 22551202 (-) |
| G1049637 | NA | non-coding | downstream | 67990 | 22539592 ~ 22539868 (-) |
| G1049510 | NA | non-coding | downstream | 74604 | 22533019 ~ 22533254 (-) |
| G1049711 | NA | non-coding | upstream | 18284 | 22672764 ~ 22673062 (-) |
| G1049713 | NA | non-coding | upstream | 20962 | 22675442 ~ 22676180 (-) |
| G1049723 | NA | non-coding | upstream | 35276 | 22689756 ~ 22689994 (-) |
| G1049726 | NA | non-coding | upstream | 46118 | 22700598 ~ 22700972 (-) |
| G1049753 | NA | non-coding | upstream | 105672 | 22760152 ~ 22760393 (-) |
| G1049389 | NA | other | downstream | 267349 | 22337086 ~ 22340509 (-) |
| G1049089 | NA | other | downstream | 482954 | 22113948 ~ 22178642 (-) |
| G1048995 | NA | other | downstream | 664862 | 21938446 ~ 21942996 (-) |
| G1048996 | NA | other | downstream | 669658 | 21937331 ~ 21938200 (-) |
| G1049722 | NA | other | upstream | 34681 | 22689161 ~ 22689597 (-) |
| G1050429 | NA | other | upstream | 589157 | 23243637 ~ 23244270 (-) |
| G1052040 | acaca | other | upstream | 1900217 | 24554697 ~ 24555000 (-) |
| LOC118936414 | NA | other | upstream | 1949800 | 24600309 ~ 24607820 (-) |
| G1054211 | NA | other | upstream | 2969399 | 25623879 ~ 25624637 (-) |
