LOC118937648


Basic Information

Item Value
gene id LOC118937648
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22624544 ~ 22625907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118937648
GAAATTTGAATAAAAAAGTGATGGCAGGAAATCCCCCGAGTTATTACTGGAGAAACCTCTGGACAGTGAAAAGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCATCTGCTGCAGTCAGTATTCCACCTGCTGCACTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCAGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCGCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTACTGCAGACAGTATTTCACCTACTGCAGACAGTATTTCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCAGTCAGTATTCCACCTGCTGCACTCAGTATTCCACCTGCTGCACTCAGTATTCCACCTGCTTCTTACGGCTGTAGATGGTGGACAACCTGAGAAATCAGAGACTCCTTCTGTTCTTATTAATATACTAGATGTCAATGGCAATGCTCCAGTACTTGACCAGCTAATGAAAACAGCTAGTTTGTTGGAAAACGCTCCACCAAGCACATTATTGACTAAACTCATGGCATCTGGCTCTGATTCTGGTCTTAATGTGGAGATATCTTAACTCTTTAGTAAGTACTGATCCGAGtgaaaggagaggtggagtaTGAAATGGCTGACATTTATGACATCACTGTGCATGCCAGAGCCCCCGCCATGGAAGGCTCCTGTCACATTCAAGTCAAAATCAATGACAAGAACGACAACAACCCAAAGATAATCATAAATGCATGATCTAAAGTGGTCCAGGAGGACGTATAATCAGACACTGTTATAGCCTTCATCACTTGTAGAAATGGGGAGGTTGACGTCCGCATTCCCTCTGATCTTTAATTTTGGTTGATACCCCCTCTGAGGAGCACTATGCCCTGGTTACAGATGGCCCTTTGGACCGAGAGGCTGTGACTGAATACACCATCACAGTGACAGCCACAGACTCCGGCTCCCCCCCTCGCACAACAGTCCATTGTGGTCGCTCTTCCAGGTGTAAATGACAACGACCCCTCTTCTCCCAGTCCTCCTACTCTGTTGATATAGCGGAGAACAATGCCCATGGTGCTCTCATCCTGACTGTGACTCCATTCGACCAGGACCTCGCCCAGAAcgcccacctctccttctccatcctggaTGTTGAGGTGCAAGGCTCGGCCTTGTCCTCTTTGGTCTACATAAACTCTGAGAACGGCGACCTGCATGCCATTCGTGCCCTCGACCATGAGCAGGTGAATGTGTTCTAGGTGCAGAGCTCCAATGTGACCATGCATTTATA

Function

NR:

description
PREDICTED: protocadherin gamma-C5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118937648 True 1364 mRNA 0.48 1 22624544 22625907

Neighbor

gene id symbol gene type direction distance location
LOC110537218 LOC106568105 coding downstream 77737 22540032 ~ 22546807 (-)
LOC110536819 LOC106568266 coding downstream 127379 22496737 ~ 22497165 (-)
LOC110537217 LOC106568238 coding downstream 130430 22489205 ~ 22494114 (-)
LOC118937646 NA coding downstream 147541 22467396 ~ 22477003 (-)
LOC110537215 LOC105014916 coding downstream 225559 22361779 ~ 22398985 (-)
LOC118937649 LOC106603247 coding upstream 13082 22638989 ~ 22641219 (-)
LOC118937813 LOC106604822 coding upstream 33708 22659615 ~ 22662980 (-)
LOC118937647 NA coding upstream 37376 22663283 ~ 22665618 (-)
LOC110537219 LOC106603252 coding upstream 39755 22665662 ~ 22670678 (-)
LOC110537220 NA coding upstream 67792 22693699 ~ 22756982 (-)
G1049666 LOC106568124 non-coding downstream 57634 22561152 ~ 22566910 (-)
G1049658 NA non-coding downstream 70974 22553367 ~ 22553570 (-)
G1049656 NA non-coding downstream 73342 22550926 ~ 22551202 (-)
G1049637 NA non-coding downstream 84676 22539592 ~ 22539868 (-)
G1049510 NA non-coding downstream 91290 22533019 ~ 22533254 (-)
G1049711 NA non-coding upstream 46857 22672764 ~ 22673062 (-)
G1049713 NA non-coding upstream 49535 22675442 ~ 22676180 (-)
G1049723 NA non-coding upstream 63849 22689756 ~ 22689994 (-)
G1049726 NA non-coding upstream 74691 22700598 ~ 22700972 (-)
G1049753 NA non-coding upstream 134245 22760152 ~ 22760393 (-)
G1049389 NA other downstream 284035 22337086 ~ 22340509 (-)
G1049089 NA other downstream 499640 22113948 ~ 22178642 (-)
G1048995 NA other downstream 681548 21938446 ~ 21942996 (-)
G1048996 NA other downstream 686344 21937331 ~ 21938200 (-)
G1049722 NA other upstream 63254 22689161 ~ 22689597 (-)
G1050429 NA other upstream 617730 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1928790 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1978373 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2997972 25623879 ~ 25624637 (-)

Expression


Co-expression Network