LOC118937813 (LOC106604822)


Basic Information

Item Value
gene id LOC118937813
gene name LOC106604822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22659615 ~ 22662980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118937813
ATGGACCCGGGCTCTACTATGACCAGAGACCAAGTGACCTTGCAACCTTCTCAGAATGAAAAAAGCTTTCTGGATGACCCGGATTCTCCTGAGCAGGTTAACAATGTGACAGGACAAGCACGATACTCCATCCTAGAGGAGATGGCAGAGGGATCTTTTGTCGGTAATATTGCGAAGGACTTGGGTTTGGAGGTCAGTCGGCTTGTTACTGGTAAGCTCACATTGTAACAAAGGGGAGTCGTCAGTATGTTGATCTCAACAGAGACAAAGGCACTCTGGTTGTGAAAGAGAGaatagacagagaagagctctgCAAGCAGACTACGCCTTGCAGCTTTCGTTTTGAGGTTATAATCGAAAATCCCATCCAATTGTATCGAATAACAGTCGAGGTCCGGGATATAAATGACAATGCCCCTTCCTTTTTGAGAGATAGTGTTAACCTGAAAATTAGCGAGTCTGCGCTGTCTGGAGCTTCTCATTAGATAATGCAATGGACTCGGATGTGGGCATGAATAGCTTACAAAACTATGCACTCAAGCCATCAGATAATTTTAAATTAGCAGTACATAGGAACACTGATAGTAAATACGTCGAAATGATTCTGCAGAACCCattagacagagagagtcagGAAGATCGTACGTTGCTCCTTATAGCAACCGATGGGGGGGATCCGCAAAAATCCGGAACTGTTCTCATCCACGTTACAGTGCTAGATGCGAACGATACCGCTCCAATCTATTTACAAGGCTGTAGTGAGAGAGAACTCCCCAAAAGGCACACTGATATCAACAGTCAACGCTGCGGATGCTGATAATGGGTCGTATGGAAAAGTATCGTATTCCATGGCCTCAAGAGATGCAAAAGAGTTGTTTCAGATAAATGCGGAAACAGGAGAGATCAGTATCAGACAAATTAGATTACGAAGAAGCAAACAATTATCAGTTGAATGTGAAAGCGAAAGACCACGGTGGACTTTCCGATATATGTAAAGTTGTTATTGAAATTATTGACGAGAATGATAATTCTCCAACAATACAACTGATGTCTTTTTCCAATACCATAGCAGAGAATTCCCCTCCTGGAACTACAGTAGCCGTGATAAATGCAGAGCATGCAGATGCTGGAAAGAATGGCGTGGTGCACTGTTCTATAAACCCAGATATCCCTTTCAGAATGGAGTCTTCAATGACCGACTATTATAGCTTAGCAACTGATGGCGTCCTCGACCGAGAATCGATTTCAGAATACGTCACCATAAATGTATCAGACGACGGGACACCGATTCTCTTCAGTAATAAAACAGTGACAGTGAAAGTGACAGATGTCAATGACAACCCACCCGCCTTTGACCGCTGTGTCTATGAGGCATTTGTACCGGAGAACAATTCCCCGGGGATCTCCATATTCACTATCAGGGCGAGTGATGCTGACTCTGGACAAAATGCGCGCTTGTCCTACTACCTGGAGAACAGTGAGATAAATGGGGCACAGGTCTCTTCACTGGTCTCGGTCAATTCAGAGAATGGGGTTATTCATGCTGTGCGCTCATTTGATTATGAACAAGTAAAATAGTTTCTTTGTAATATAACTGCGCGAGACGGAGGGTCCCCGCCCCTCAGTGCTACTGTTACTGTGCACATTTATATCCAAGACCAGAACGATAACGCGCCTCAGGTTCTCTTCCCAGTACAGACGAGTAGCTCTCTGGTGGCTGAAATTGTGCCTCGTTCAGCAGATGTGGGCTATCTTGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCTTGGCTCTCATATAAACTGCAGAAGGCGACAGACAGGGCGCTGTTTAAAATAGGCCTACAGAATGGATAAATAAGAACCATACGCCAGGTCACTGATAAAGATGCTGTGAAACAAAGGCTCGCTGTTATAGTGGAGGACAACGGGCAGCCCTCTCGCTCATCTACAGTCAATGTGAACGTGGCAGTGGCGGACAGCATCTCTGAAGTGCTCTCAGAATTCAGTGACTTTACGCATGACAAAGAATACCACGATAACTTTCCTTTTTATCTAGTTTTGGCCTTGGCTGTCGTGTCTTTTCTCTTCATCTCGTGTGTAGTGGTTATAATATCGGTTAAGATCTACAGATGGAGACAATTTCGCAACATCCACCACTCCAATCTCCCAGTGATTCCATATTATCCACCCGTTACGCAGACGCCGGAGGGACAGGGACTCTGCAACACGTGTACAACTATGAGGTGTGCATGACGACTGACTCAAAGAAGAATGACTGTAAATTCGCCAGACCTTTTAGTCAGAACGTTTTAATAATGGACCCGAGCTCTACTATGACCAGAGACAATGCGACCTTGCAATGTTCTCAGAATGAGAAAAGCTTTCTGGGTGACCCGGATCCTCCGGAGCAGGTGAGACAGGCTGTACAGAAATATTACATGCTTTGTTTAGTGAAAGTACACTGCTGAGCTTGCAATATGTTTGGATGTTTTTCTTGTCAGTACATTCTGGAAATCCTTT

Function

NR:

description
PREDICTED: protocadherin beta-16 isoform X16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118937813 True 2535 mRNA 0.45 2 22659615 22662980

Neighbor

gene id symbol gene type direction distance location
LOC110536820 LOC106603249 coding downstream 5135 22607858 ~ 22654480 (-)
LOC118937649 LOC106603247 coding downstream 18396 22638989 ~ 22641219 (-)
LOC118937648 NA coding downstream 33708 22624544 ~ 22625907 (-)
LOC110537218 LOC106568105 coding downstream 112808 22540032 ~ 22546807 (-)
LOC110536819 LOC106568266 coding downstream 162450 22496737 ~ 22497165 (-)
LOC118937647 NA coding upstream 303 22663283 ~ 22665618 (-)
LOC110537219 LOC106603252 coding upstream 2682 22665662 ~ 22670678 (-)
LOC110537220 NA coding upstream 30719 22693699 ~ 22756982 (-)
LOC110537223 LOC106568102 coding upstream 106903 22769883 ~ 22779486 (-)
LOC118937814 NA coding upstream 129128 22792108 ~ 22796733 (-)
G1049666 LOC106568124 non-coding downstream 92705 22561152 ~ 22566910 (-)
G1049658 NA non-coding downstream 106045 22553367 ~ 22553570 (-)
G1049656 NA non-coding downstream 108413 22550926 ~ 22551202 (-)
G1049637 NA non-coding downstream 119747 22539592 ~ 22539868 (-)
G1049510 NA non-coding downstream 126361 22533019 ~ 22533254 (-)
G1049711 NA non-coding upstream 9784 22672764 ~ 22673062 (-)
G1049713 NA non-coding upstream 12462 22675442 ~ 22676180 (-)
G1049723 NA non-coding upstream 26776 22689756 ~ 22689994 (-)
G1049726 NA non-coding upstream 37618 22700598 ~ 22700972 (-)
G1049753 NA non-coding upstream 97172 22760152 ~ 22760393 (-)
G1049389 NA other downstream 319106 22337086 ~ 22340509 (-)
G1049089 NA other downstream 534711 22113948 ~ 22178642 (-)
G1048995 NA other downstream 716619 21938446 ~ 21942996 (-)
G1049722 NA other upstream 26181 22689161 ~ 22689597 (-)
G1050429 NA other upstream 580657 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1891717 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1941300 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2960899 25623879 ~ 25624637 (-)

Expression


Co-expression Network