LOC118937647


Basic Information

Item Value
gene id LOC118937647
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22663283 ~ 22665618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937230.1
TGTAGGCTTAGTTATGGACTGTGTAACAAAACAGTCTGTCTTTAGTTGGCTGTGTATGATTTCGACATGATGATAGTCTGCACTCTGGACTCTGAGTGCCGCTGTTGGACAGTAAGACGAGTTATAAGCTTCAAATTCACAGAACCTCCTGTCTGATGGATTCATATGAGCTGATACAACATTCGGGGAAGATATCTAGAATCAAACAGGAATGAAAATCAACACGGATAGATTACCAATATAGCTGATTTATATGGACTAAGAGAGAGAGTTGTGCATCAGAAGGCTACTCAATATTTCTGTTCAGAAATGTATATTTTTGCTGTTTTTTCCAAAATGTTTGAGGGAAAGCAAAATCGAACACCACAATGGCAAGCACGATTGATTATTGTGTGTGCCCTCTTGTCGCATATGGTTCGATGCCAGGTGCGATATTCGATTCCAGAGGAAATGGTACGAGGGTCTTTGATTGGGGATCTCTCAAAGCATTTGGGACTAGATATCCGAAGACTAAAATCTGGCCGGGCCCGTATTGTTAGTGAGGAAAAGGATTGTGTAGAGCTGAACGCAGACAAAGGGATTCTGATCGTCAAACAGCGCatagacagagaggagctgtGTGGACACGCATCGCCTTGTAGCTTCAACTTCGAAATGGTTCTAGAAAATCCAATGGAATTATTTAGTATAACTGTGGAAATACTTGATATCAACGATAATTCACCTGCCTTTGCGAATAAGGAAATTACCCTGAATATCAGTGAAGTAGCGTCGCCTGGAGCTCAATTTATTTTAGGCAGTGCCGTGGATCCTGATGTCGGTTTAAATGCCCTGCAAAGCTACAGTCTTAAACCTTCGACTCATTTTACTTTGAAAGAACAAACGTTTGCTGATGGTGGTAAATATGTGGAGATGGTTTTGAAAAGTCCTTtagatagagaggaggaaggtGAAATGTTTCTAACATTGACAGCTGCCGACGGAGGAAATCCGCGGAGAACAGGGACTGTGAGCATAAAAGTGAATGTTTTGGATGCCAATGATAATGCTCCGGTTTTTAGTCAAGCCGTATACAAAGCCTCTGTTTTGGAGAACTCCCCTAAAGGGACTTTAGTAGCAACTGTGATTGCGACCGACGCAGATGTGGGCAGTAATGGTCAGTTAGAATATTACATTGACCAGCTTACACAACAAAATGCTATGGTGTTCACACTAAATCCAAGCAGTGGAGAAATACGAGTATCAGGTTTACTCGACTATGAGAAAACTAAGCAGTTTCAAATTAATGTAATTGCCAAGGACATAGGTGGCCTCTCAAAATCTTGCAAAGTAGTAATTGAAGTGATAGATGTGAATGACAATCCCCCCGTTATAGCATTGACATCTTTTTCCAATACCATCCCCGAGGACTCTCCCCAGGGAACAACTGTCGCCATTGTTAACGTGAAAGACTTGGACTCTGGACAAAATGGTAATGTTAATTATTCCATCGACCATTCTCTTCCCTTTAAGATAAAATCTTCATTAGTGAACTATTACACTTTACTAACAAACAGTGTTTTAGACCGTGAGGTTGTGTCTGAGTATAACGTCACAGTGACAGCGGTGGACAAAGGTCTTCCCTCATTACGTCACAATAAGACCCTTCGCATAAGAATCTCTGATGTGAACGACAATGTGCCAGTGTTCGATAAAAGCGAGTACACAGCTCGGATATTAGAAAACAACTCCCCAGGTGTGTCAATTGGTTTGGTCCACGCCAAAGATGAAGACTGGGGCCAGAATGCCAGGGTCTCCTATTTCTTGGAGGAATCGCAGGTGGGAGGAAATTCTATTGCATCTTTAATATCGATTAATTCTGAAACAGGATTGATTTATGCAGTGAGATCCTTTGATTACGAACAAATCAAAGATTTTGAATTCCAGGTTAAAGCGCAAGATGGAGGCTCCCCTTCACTTAACAGTAACGTGACTATAAAGTTAATAATTCAAGATCAGAATGACAACACTCCTCATGTTCTCTACCCAGTACCGACGAGCTCTCTGGTGGCTGAAATGGTGCCTCGTTCAGCAGATGTGGGCTATCTTGTCACTAAAGTGGTGGCTGTTGATATGGACTCTGGACAGAATGCATGGCTCTCATATAAACTGCAGAAAGCGACAGACAGGCCGCTGTTTGAAGTAGGTCTACAGAATGGAGAAATTGAGGAATAAGAATGGAGAAATAAGAACTGTTGTAGTGGCGGACAACGGGCAGCCCTCTCGATCAGCTACAGTCAATGTGAACGTGGCAGTGGCGAACAGCTTCCCCGAAGTGATCTCAGAATTCACTGACT

Function

NR:

description
protocadherin beta-16-like isoform X4

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937230.1 True 2336 mRNA 0.42 1 22663283 22665618

Neighbor

gene id symbol gene type direction distance location
LOC118937813 LOC106604822 coding downstream 303 22659615 ~ 22662980 (-)
LOC110536820 LOC106603249 coding downstream 8803 22607858 ~ 22654480 (-)
LOC118937649 LOC106603247 coding downstream 22064 22638989 ~ 22641219 (-)
LOC118937648 NA coding downstream 37376 22624544 ~ 22625907 (-)
LOC110537218 LOC106568105 coding downstream 116476 22540032 ~ 22546807 (-)
LOC110537219 LOC106603252 coding upstream 44 22665662 ~ 22670678 (-)
LOC110537220 NA coding upstream 28081 22693699 ~ 22756982 (-)
LOC110537223 LOC106568102 coding upstream 104265 22769883 ~ 22779486 (-)
LOC118937814 NA coding upstream 126490 22792108 ~ 22796733 (-)
LOC110537224 LOC106568099 coding upstream 158270 22823888 ~ 22859633 (-)
G1049666 LOC106568124 non-coding downstream 96373 22561152 ~ 22566910 (-)
G1049658 NA non-coding downstream 109713 22553367 ~ 22553570 (-)
G1049656 NA non-coding downstream 112081 22550926 ~ 22551202 (-)
G1049637 NA non-coding downstream 123415 22539592 ~ 22539868 (-)
G1049510 NA non-coding downstream 130029 22533019 ~ 22533254 (-)
G1049711 NA non-coding upstream 7146 22672764 ~ 22673062 (-)
G1049713 NA non-coding upstream 9824 22675442 ~ 22676180 (-)
G1049723 NA non-coding upstream 24138 22689756 ~ 22689994 (-)
G1049726 NA non-coding upstream 34980 22700598 ~ 22700972 (-)
G1049753 NA non-coding upstream 94534 22760152 ~ 22760393 (-)
G1049389 NA other downstream 322774 22337086 ~ 22340509 (-)
G1049089 NA other downstream 538379 22113948 ~ 22178642 (-)
G1048995 NA other downstream 720287 21938446 ~ 21942996 (-)
G1049722 NA other upstream 23543 22689161 ~ 22689597 (-)
G1050429 NA other upstream 578019 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1889079 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1938662 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2958261 25623879 ~ 25624637 (-)

Expression

LOC118937647 Expression in all Baseline Samples

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LOC118937647 Expression in each Bioproject

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LOC118937647 Expression in each Sample
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Co-expression Network