LOC110537219 (LOC106603252)


Basic Information

Item Value
gene id LOC110537219
gene name LOC106603252
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22665662 ~ 22670678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110537219
GAAAACACCCTCTGCGTGACATAATAATTTCACTGGATAATCTGGTTGTTGGCGCTGCGTCTCTTCTCTTCGTTTAGCCTACTGCTGTACAacctatattattttatttaaatatgttttcatCAAGAACAACCAGACTATGCAGCATTTCAGTAGGATTACCTCGAAGATGGGACACAACCTTTTCTCTGACTCAATACTgtgtgtctctcctttctctgttaaAACTGAACACGAGCCACGGAGATGTGAGCTATTCTATTCGGGAGGAGATGAAACGTGGATCTGTGGTCGGAAATGTAGCAAAGGATTTCGGGATGGATGCTAAGAGGCTGTTGGCGCGTGAAGCTCGTTTAGACATGGATGGCAGCAGAACCCGCTACTGTGATATCAATGCTAACCCGGGGGATTTGATTATCGCTGAAACAATAGATAGAGCTGTGCGGTCCAAGGTTTCGTGTACTTTGAAATACGAGCTCGAACTTGAAAATCCTTTAGAGTTACACCGTATTACTGTTCAAATTCAGAATATAAATGACAATTCACTGGTATTTCCTAGTGACCACATAGAATTAGAAATTAGAGAATCAGCGGATAAAGGGCAGCGTTTTTTCCTAGATGAAGCCCATGATGAGGACATCGGATTAAACGCAGTTCAAAGCTATACGCTCGAGAGGAATGCACATTTTGTTTTGGCTGTTCGTACAAATACAGTCGGTGGTAAATATGGCGAGTTGATGTTAGAGAAAGAATTGGATCGAGAACAACAGTAGGAGGTGACGTTGTTACTTACTGCGGTTGATGGTGGAACTCCACAGAGATCTGGAACTGTAGTGATACACGTCACTGTGTTGGATGCAAACGATAATATTCCAGTATTTAGTCAAGACGCCTATAAAGTCAGTCTTCTGGAAAATTCTCCTTTGGGGTACCATGGTAGCTACAGTAAGTACCACGGATGCTGACGAGGGACAAAATGGGGAAGTGAGCTATGATTTCAGTGGTATATCTGATAAAGCAACGAAGCTGTTTTCTATTCAAAAGGATACTGGAGATATCAGAGTAATTGGACTAATAGATTTTGAATTGGAAACATATTATGAAATGCTTATCCAGGCGAAAGATGGATCTGGTTTAGTTTCCATGACAAAAGTAATTGTTGAAATCACAGTTAGAAATTACAATGCACCTGTGATATTCTTAAATCTTTGAAAAATCCCATCCCTGAGAACGTGTTACCTGGCACAAAGGTGGCATCATTAATGTACATGATGAAGACTGAGGGAAATAGATAGGTCCGCTGCTCCATTCAACAGAATATGCCGTTCAAACTAAAACCTTTGATTAAAAACTATAACTCTAAATTAGACCGTGAGATAATATCAGAATATATTTGAACTATCACTGCCACTGACGAGGGCTCTCCACCCTTATCCTCCTCAAAGACTATTCATGTATCTGTGTCAGACGTGAATGACAACCCACCTGTGTTTGAAGAACAATCCTACAGCGCCTATGTGACTGAAAataacacacctgtctcctctatGTGTTCTGttactgccagaggtccagactgGAGACAGAACGGTACGGAACGGAACAGAAGTGGTCTATTCTCTATTGCCCAGTGAGATCAACGGTGTTTCGGTGTACTCATTTTTATCCATCAACGGAGACACGGGGGTGATCCGTGCTGTGAGAGCATTTGATCATGAGCAGTTTAGGAGCTTCAAAGTCCACGTTGTAGCCAGAGACAATGGTTCTCCTCCGCTCAGCAGTAATGTGGCTGTGAGTGTCTTCATAACAGATGAGAATGATGACTCTCCCCCGATATTATACACTGCTCCAGCAGGGAACTCTTTGATGACCGAGATGGTCCCCATAGCTGCTCTGGTGTGTTCCCTGGTTTCCAATGTGATAGCTGTGGATGCTGACTCTGGACAGAACGCCTGACTTTCACATCAGATCGTGAAGTTAACTGATCCGGGACTTTTCACTATTGGTCTCCACAGTGGAGAGATCAGGGCACAACGGGACGTTTCTGAATCTGACAATATAAAGCAGAACCTTGTTATATCAGTGAATGATAACTGACAACCCTCTCTCTTTTCAACGCTTGATGTAAATAATTATGAGGCATACCTGACAACGGGCTCACGCACCAGTGACTTCAAATTTGTCAGATCTTACAATGACAGTGCACTGCTGGCTGGTCTTGCACTAAAGAGGAGTCCAGATGAAACCGGTGAAACAACTGACATTGAATCAACATTTTTGACTATGGTTGGAGCTGTcgctctccatggtgctgaaatatcAAACGTGCTGCATTCAAAGACCAGTCTTAGGCTTGTAAGTGCTCCAAAttcgtttaaaaaaaagaaagtgttATAAAAAG

Function

NR:

description
protocadherin gamma-C3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110537219 True 2401 mRNA 0.42 2 22665662 22670678

Neighbor

gene id symbol gene type direction distance location
LOC118937647 NA coding downstream 44 22663283 ~ 22665618 (-)
LOC118937813 LOC106604822 coding downstream 2682 22659615 ~ 22662980 (-)
LOC110536820 LOC106603249 coding downstream 11182 22607858 ~ 22654480 (-)
LOC118937649 LOC106603247 coding downstream 24443 22638989 ~ 22641219 (-)
LOC118937648 NA coding downstream 39755 22624544 ~ 22625907 (-)
LOC110537220 NA coding upstream 23021 22693699 ~ 22756982 (-)
LOC110537223 LOC106568102 coding upstream 99205 22769883 ~ 22779486 (-)
LOC118937814 NA coding upstream 121430 22792108 ~ 22796733 (-)
LOC110537224 LOC106568099 coding upstream 153210 22823888 ~ 22859633 (-)
LOC110537225 LOC106568098 coding upstream 191584 22862262 ~ 22869968 (-)
G1049666 LOC106568124 non-coding downstream 98752 22561152 ~ 22566910 (-)
G1049658 NA non-coding downstream 112092 22553367 ~ 22553570 (-)
G1049656 NA non-coding downstream 114460 22550926 ~ 22551202 (-)
G1049637 NA non-coding downstream 125794 22539592 ~ 22539868 (-)
G1049510 NA non-coding downstream 132408 22533019 ~ 22533254 (-)
G1049711 NA non-coding upstream 2086 22672764 ~ 22673062 (-)
G1049713 NA non-coding upstream 4764 22675442 ~ 22676180 (-)
G1049723 NA non-coding upstream 19078 22689756 ~ 22689994 (-)
G1049726 NA non-coding upstream 29920 22700598 ~ 22700972 (-)
G1049753 NA non-coding upstream 89474 22760152 ~ 22760393 (-)
LOC110537218 LOC106568105 other downstream 119005 22540032 ~ 22546807 (-)
G1049389 NA other downstream 325153 22337086 ~ 22340509 (-)
G1049089 NA other downstream 540758 22113948 ~ 22178642 (-)
G1048995 NA other downstream 722666 21938446 ~ 21942996 (-)
G1049722 NA other upstream 18483 22689161 ~ 22689597 (-)
G1050429 NA other upstream 572959 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1884019 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1933602 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2953201 25623879 ~ 25624637 (-)

Expression


Co-expression Network