LOC118937814


Basic Information

Item Value
gene id LOC118937814
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22792108 ~ 22796733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118937814
ATGGACCTCCGAGGCGCGAAGAAACGGCTGGCGGGGACATGGCAGAGTTCGCAGGACTTGGACGTTGGCAGCGACTCTTTCCGCTCCTATCTGCTGAGTGTGAACGGCCATTTCGCCCTGGACGCCTAGCGTTAGCAGTACGTTTGCGGAGTTGGTCCTGGACACAAGAGGAGCAGAATACGCACCGAATTGTGCTGACTGATGTGGATGGAGGCTCGCCAGAGAGGCCCAGGACAACGCAGATCAATATAACAGTTATAGATGCAAATGACAACGCGCCGGTGTTCGACCAGTCTTTCTACAGAGTGAAGCTTGTGGAAAACGCACCGAAGGACACTGTTGTGATTAAACTAAACGCATCGGATTTGGATGACGGTCCAAACGCGGAAATCACATACGCTTTCATCGGGCATGCACCCATTAAGGTGCGCGAGATTTTCAGCATGGATTCGCGCACTGGAGAGATCAGAGTGAAAGGGGTCGTAGATTACGAAAAAGACAGGATGCAAGAAATAGATGTGCAAGCCAGGGACATGAGCTCCTCGGCAGTGGCCGTGCACTGTACGGTTCTGGTGATATCATAGATGTGAATGACAACCTCCCGGAGGTGATTTTGACATCAGTGTCCACACCTGTCCAAGAGGACGGACCACCCGGGACTGTGATAGCTGTCATTAGTGTCATGGACAAGGACTCAGGTGAAAATGGGAACGTTGACTGTGAAATTCCAGATCATGTCCCAGCTCCACTCCTCTTTTAAGAATTATTACACTTTGGTAACTTTTTTTGGACCGAGAAACCATTTCTGACTACAACATCACTCTCACAGCACGGGAAATGGGCGCGTCTCCCTTGTTCACAATGACAACTATTTTAGTGCAAGTGTCAGACATGAATGACAACGCACCCCGATTCAAGCAGCCATCATACACTGTATATTTGAGAGAGAATAACGCAACAGGAACCTCAATTTGTTTACTGCCCTGGATCCAGATTCGGACCAAAATGCCTATCTTTCTTACACTAttctggatatatatatatatatatatatcacatataCAGGGAATGCCGGTGTCCACCTACGTCTTCATAAACTCAGACAATGGAAATATGTACGCCCAGCGTTCTTTTGACAATGATCAGCTAAGAAACGTTCAAATTTTAGTCCAATCACAAGATTCCGGTTTCCCTCCCCTGAGCAACAATGTTATTGTGAATGTTTTTATTTTCGACCAAAATACGCGGTGCTTAGTAGTGTCTCTGTGCGCTATCTCGTTCACGTTTCTGATGGCTATTTTGGCCCGGATAAGGGCATACAGGGACCTTCCATTCGAGGATTTAATTTCTCTTTTAGTGGATGCTGCGAGTTCCGATCTGAGGAGTCTACCGCTGATGTGATCAAGAAGTCCAACCTGAATGTGCAGAAAACCACAGGCACCAAAGGATCCACGAACTGCGACGAGGCAAAAATGCAACGGCCCCCTTTCACAGGCACACTACTTCAAGATGTGACTGACCCAGGAATCATCAAAGAGCGATTTCATGTTCCTAAAGCCATGCATCCAGATAACTGCAACTCCACAGAAGGATAACACCAAGGGCACAGACGACATCGAGTTGGAACGCACAGGACCTCCGCAACCTGATAGTGAACAACGGAGCAATTACTCCGAACGATCAGACTGCAACATGTCCACCCAGGAAGGAGAAGTTGGGAGTGTAGGAGGTGTTCTAAACCGTACGTGGACTCTAAGGTACACCCAGCCCCTATCTGCACAGCAACCACCTGACTACCAGCCCAATGTCTACATCCCTGGCATGCTGTCTGGCTACTGTACACTGAAGCTTGTGCCCAGAGGAGAGCTGAACTAATTTTCTATATTTGGAAAGAAGAAGAGGTCCGTCTCTAGCTATGACCCAAGCTTGAGCAGAGAGAGGACAATCTGATCAACAGTGACTTTTCTAAATGAATATAGTGGGACAGACTGTGCATACAATTCAAGGTAATTTCTTGTGGATGCTCACTAACTATTAATATCAACAACCCATAAATTATAACCCTCTGTGTCTGTTTGTATCCATGCTCCTTCGCACGTATAATTTGCAACATTACACCATAGTATTTTGTCTCAATACAGCAGTGTCTGTGTCATAATGCTATCCCTTTTAATTCATATCATGTGCAATCCTAGTTTAGGAtgagggtgatgatgatgatgatgatgatgatgattgtacAGATATAATGGCAATTATAGCCacttatggtgaaaattatctgaGGATATACCATCTGCAGATTATGCATTGCATTCTGTGAGGCAATAATTTACAGGCATGCACAGTGCCTTCCAaatttttttacgttacagccttattctaaaatgtattttaaaaaaaatgtttctcatcaatctacacacaataccccacaatgacaaggtatgtattaaaaaaacaaaactgaaatat

Function

NR:

description
PREDICTED: protocadherin-10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118937814 True 2475 mRNA 0.45 3 22792108 22796733

Neighbor

gene id symbol gene type direction distance location
LOC110537223 LOC106568102 coding downstream 12622 22769883 ~ 22779486 (-)
LOC110537220 NA coding downstream 35126 22693699 ~ 22756982 (-)
LOC110537219 LOC106603252 coding downstream 121430 22665662 ~ 22670678 (-)
LOC118937647 NA coding downstream 126490 22663283 ~ 22665618 (-)
LOC118937813 LOC106604822 coding downstream 129128 22659615 ~ 22662980 (-)
LOC110537224 LOC106568099 coding upstream 27155 22823888 ~ 22859633 (-)
LOC110537225 LOC106568098 coding upstream 65529 22862262 ~ 22869968 (-)
LOC110537227 LOC106568097 coding upstream 82452 22879185 ~ 22881924 (-)
LOC118937815 LOC106568112 coding upstream 640985 23437718 ~ 23438711 (-)
LOC118937816 LOC106568112 coding upstream 656744 23453477 ~ 23454855 (-)
G1049753 NA non-coding downstream 31715 22760152 ~ 22760393 (-)
G1049726 NA non-coding downstream 91136 22700598 ~ 22700972 (-)
G1049723 NA non-coding downstream 102114 22689756 ~ 22689994 (-)
G1049713 NA non-coding downstream 115928 22675442 ~ 22676180 (-)
G1049711 NA non-coding downstream 119046 22672764 ~ 22673062 (-)
G1050155 NA non-coding upstream 24308 22821041 ~ 22821486 (-)
G1050156 NA non-coding upstream 24783 22821516 ~ 22821718 (-)
G1050157 NA non-coding upstream 25483 22822216 ~ 22822439 (-)
G1050165 NA non-coding upstream 31512 22828245 ~ 22829107 (-)
G1050227 NA non-coding upstream 194277 22991010 ~ 22992778 (-)
G1049722 NA other downstream 102511 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 150509 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 245451 22540032 ~ 22546807 (-)
G1049389 NA other downstream 451599 22337086 ~ 22340509 (-)
G1049089 NA other downstream 667204 22113948 ~ 22178642 (-)
G1050429 NA other upstream 446904 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1757964 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1807547 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2827146 25623879 ~ 25624637 (-)
G1054232 NA other upstream 2860536 25657269 ~ 25659005 (-)

Expression


Co-expression Network