LOC110537224 (LOC106568099)


Basic Information

Item Value
gene id LOC110537224
gene name LOC106568099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22823888 ~ 22859633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623104.2
TGCTTGAGTGAACCCCTCCCCAATCCTGTCTTCTGTGACGTCATATCAGCTGCAGGCCGACGCAGGGCTGGGTTTCCATTTTTCGCAGCGAGTGAGTTTCGGGGAACAAGAATATGGAGCCGGAGATGGAGGACAAAACGTTGGAGCAGATGaaCTCCACTTTCATGGACTCCCAGACAGATGAACGATCAAAGAAAAGCACAGTGTTCAAGACGATCACGAACGGTCTGATGACGGGCTCAAGGAAGCGACCATCGGAAGGGAACTATGAGAAGGAGAAGGAAGTGTGCATCCAGCTGTTTGACCAGTGGTCTGAGGCTGACCAGGTGGAGTTTGTGGAACACCTGATCTCACGCATGTGCCACTACCAACACGGCCACATCAACTCCTACCTCAAACCCATGCTCCAAAGGGACTTCATCACTGCACTGCCAGCTCAGGGTCTGGACCACATAGCGGAGAACATCCTGTCCTTCTTGGATGCGCGTTCTCTCTGCTCGGCAGAGCTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCAGAGGGCATGCTGTGGAAGAAACTCATAGAGCGTATGGTCCGTACAGACCCTCTCTGGAAAGGCTTGTCAGAGAGGCACCAGTGGGAGAAGTACCTGTTCAAAAATCGAACCACAGAAGTCCCACCAAACTCCTACTACCGCTCACTTTACCCCAAAATCATCCAGGACATAGAGACGATCGAGGCTAACTGGAGGTGTGGTCGGCACAATCTGCAGCGGATCCAGTGTCGTTCAGAGAACAGTAAGGGGGTTTACTGTCTGCAGTATGACGACGACAAGATCATCAGCGGCCTCCGAGACAACTCCATTAAGATCTGGGATAAgcagtctctggagtgtctgaagATCCTGACGGGTCATACAGGCTCAGTGTTGTGTCTGCAGTATGATGAGCGGGTCATCGTCACCGGCTCCTCAGACTCCACCGTCAGggtGTGGGATGTGAACACTGGGGAGGTGCTGAACACTCTGATCCACCACAATGAGGCGGTCCTCCACTTGCGGTTCTGTAACGGTCTGATGGTGACGTGCTCTAAGGACCGTTCCATTGCCGTGTGGGACATGGCCTCACCCACCGACATCAGTCTGCGCCGCGTGCTGGTCGGCCACAGAGCAGCGGTCAATGTGGTGGACTTCGATGACAAGTACATCGTGTCAGCATCCGGTGATCGTACCATCAAGGTGTGGAGCACCAGCACGTGTGAGTTTGTTCGCACACTGAACGGCCATAAGAGAGGCATTGCCTGTCTGCAGTACAGAGACCGACTAGTGGTCAGTGGCTCATCTGACAACACTATCCGGTTGTGGGATATTGAGTGTGGGGCATGTTTGCGCGTATTGGAAGGCCATGAAGAGTTGGTCCGCTGCATTCGATTCGACAACAAAAGGATCGTTAGTGGAGCCTACGATGGTAAAATCAAAGTATGGGACCTGCAAGCTGCTCTGGACCCTCGTGCCCCTGCCAGCACCCTCTGTCTGCGCACACTGGTGGAGCATTCTGGGCGTGTATTCCGACTACAGTTTGATGAGTTCCAGATCATCAGCAGTTCCCATGACGACACCATCCTCATCTGGGATTTCCTGAACGTGTCGACCAATGGACAGACTGAGGGCCGGTCGCCCTCTCGCACGTACACATACATCTCCAGATAGCAGGGCAGGCccggtggtgtgtgtgtctgtgtccgaGGACAGTCCTGATTGCCAAGTCAATGTGTCAGGGTCAGAGGTCAAGGAAAGGACCCaccctcccttccctccatcATCCTCTTTGCACCATCTCTGTTGTCCTCCTGGTGTTCATGTGGAGGGGTCATCCCTCCCCGATCGGCCAGTCAGTGCTCAAACGCACTTCCCCTTACCCCTCTGaaaatcacacaaacacacatactctcacacacagagcGGAGTCTATTAGGTCACACTCTAAGCCCCACCTCCCCTTACTCTGCTCCCCCAAGACAGAGGCCTGGACATGAAGGAATCTGAACTGAATGGCTGAAGGAGGGGGCTGGAGATGGCCTGGGGTGGAGAAAAGAGGCGGGTCCCGGGGCTCAACTCTTCTCCTGACTGAGTGACAGATACCTCAGGCCTGCCCCTTGGACCCAAGGACTGTATCAATATTGTTCCTTTCTCATTTTGTTTGGTGGAAGAAAGAAAAAAGACTGGAAGAGAGAAAGCTGACGTGTACATTGCTTTACTGCATGGATGAATGATGGGACAACCGTGTGCTAGTGACCTATTTGTTTTTCTAACTTGTACTTTTTATTTGGGACTTTTAATTTAGCTTTCTTTGTTACATTGTACTAAGAATTGTAGTTTCTCTTTCCAAACCCCTCTCAAATTAACCCTCTCATATCCCTAGTTCTCTACCTTGCGTCCGtccctctttcactttctctccctgtcttgttcTGTCCTcttgctgtctgcctgtctaggTTCTGAATGATCCCTAACTGAGCGGAAATTAGTTGTAAACAGCATTGTCTCGTCTAAAATGGTGTTGTATATTGAAatgatttttttaatgaaagAAAAACCATTAATACAAATAAAGTACTTGACTGTGAAGGAGTGTAAA
>XR_002475589.2
ATGCTTGAGTGAACCCCTCCCCAATCCTGTCTTCTGTGACGTCATATCAGCTGCAGGCCGACGCAGGGCTGGGTTTCCATTTTTCGCAGCGAGTGAGTTTCGGGGAACAAGAATATGGAGCCGGAGATGGAGGACAAAACGTTGGAGCAGATGaaCTCCACTTTCATGGACTCCCAGACAGATGAACGATCAAAGAAAAGCACAGTGTTCAAGACGATCACGAACGGTCTGATGACGGGCTCAAGGAAGCGACCATCGGAAGGGAACTATGAGAAGGAGAAGGAAGTGTGCATCCAGCTGTTTGACCAGTGGTCTGAGGCTGACCAGGTGGAGTTTGTGGAACACCTGATCTCACGCATGTGCCACTACCAACACGGCCACATCAACTCCTACCTCAAACCCATGCTCCAAAGGGACTTCATCACTGCACTGCCAGCTCAGGGTCTGGACCACATAGCGGAGAACATCCTGTCCTTCTTGGATGCGCGTTCTCTCTGCTCGGCAGAGCTGGTGTGTAAGGAGTGGCAGAGGGTCATCTCAGAGGGCATGCTGTGGAAGAAACTCATAGAGCGTATGGTCCGTACAGACCCTCTCTGGAAAGGCTTGTCAGAGAGGCACCAGTGGGAGAAGTACCTGTTCAAAAATCGAACCACAGAAGTCCCACCAAACTCCTACTACCGCTCACTTTACCCCAAAATCATCCAGGACATAGAGACGATCGAGGCTAACTGGAGGTGTGGTCGGCACAATCTGCAGCGGATCCAGTGTCGTTCAGAGAACAGTAAGGGGGTTTACTGTCTGCAGTATGACGACGACAAGATCATCAGCGGCCTCCGAGACAACTCCATTAAGATCTGGGATAAgcagtctctggagtgtctgaagATCCTGACGGGTCATACAGGCTCAGTGTTGTGTCTGCAGTATGATGAGCGGGTCATCGTCACCGGCTCCTCAGACTCCACCGTCAGggtGTGGGATGTGAACACTGGGGAGGTGCTGAACACTCTGATCCACCACAATGAGGCGGTCCTCCACTTGCGGTTCTGTAACGGTCTGATGGTGACGTGCTCTAAGGACCGTTCCATTGCCGTGTGGGACATGGCCTCACCCACCGACATCAGTCTGCGCCGCGTGCTGGTCGGCCACAGAGCAGCGGTCAATGTGGTGGACTTCGATGACAAGTACATCGTGTCAGCATCCGGTGATCGTACCATCAAGGTGTGGAGCACCAGCACGTGTGAGTTTGTTCGCACACTGAACGGCCATAAGAGAGGCATTGCCTGTCTGCAGTACAGAGACCGACTAGTGGTCAGTGGCTCATCTGACAACACTATCCGGTTGTGGGATATTGAGTGTGGGGCATGTTTGCGCGTATTGGAAGGCCATGAAGAGTTGGTCCGCTGCATTCGATTCGACAACAAAAGGATCGTTAGTGGAGCCTACGATGGTAAAATCAAAGTATGGGACCTGCAAGCTGCTCTGGACCCTCGTGCCCCTGCCAGCACCCTCTGTCTGCGCACACTGGTGGAGCATTCTGGGCGTGTATTCCGACTACAGTTTGATGAGTTCCAGATCATCAGCAGTTCCCATGACGACACCATCCTCATCTGGGATTTCCTGAACGTGTCGACCAATGGACAGACTGAGGGCCGGTCGCCCTCTCGCACGTACACATACATCTCCAGATAGCAGCCAGCCATCCTATTTATTCTATTGATCTTCAGTCTACAGCACTTGTTTGGGGCAGGCccggtggtgtgtgtgtctgtgtccgaGGACAGTCCTGATTGCCAAGTCAATGTGTCAGGGTCAGAGGTCAAGGAAAGGACCCaccctcccttccctccatcATCCTCTTTGCACCATCTCTGTTGTCCTCCTGGTGTTCATGTGGAGGGGTCATCCCTCCCCGATCGGCCAGTCAGTGCTCAAACGCACTTCCCCTTACCCCTCTGaaaatcacacaaacacacatactctcacacacagagcGGAGTCTATTAGGTCACACTCTAAGCCCCACCTCCCCTTACTCTGCTCCCCCAAGACAGAGGCCTGGACATGAAGGAATCTGAACTGAATGGCTGAAGGAGGGGGCTGGAGATGGCCTGGGGTGGAGAAAAGAGGCGGGTCCCGGGGCTCAACTCTTCTCCTGACTGAGTGACAGATACCTCAGGCCTGCCCCTTGGACCCAAGGACTGTATCAATATTGTTCCTTTCTCATTTTGTTTGGTGGAAGAAAGAAAAAAGACTGGAAGAGAGAAAGCTGACGTGTACATTGCTTTACTGCATGGATGAATGATGGGACAACCGTGTGCTAGTGACCTATTTGTTTTTCTAACTTGTACTTTTTATTTGGGACTTTTAATTTAGCTTTCTTTGTTACATTGTACTAAGAATTGTAGTTTCTCTTTCCAAACCCCTCTCAAATTAACCCTCTCATATCCCTAGTTCTCTACCTTGCGTCCGtccctctttcactttctctccctgtcttgttcTGTCCTcttgctgtctgcctgtctaggTTCTGAATGATCCCTAACTGAGCGGAAATTAGTTGTAAACAGCATTGTCTCGTCTAAAATGGTGTTGTATATTGAAatgatttttttaatgaaagAAAAACCATTAATACAAATAAAGTACTTGACTGTGAAGGAGTGTAAA

Function

NR:

description
F-box/WD repeat-containing protein 11-like

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03362 FBXW1_11, BTRC, beta-TRCP; F-box and WD-40 domain protein 1/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623104.2 False 2622 mRNA 0.51 13 22823888 22859632
XR_002475589.2 True 2673 mRNA 0.51 14 22823888 22859633

Neighbor

gene id symbol gene type direction distance location
LOC118937814 NA coding downstream 27155 22792108 ~ 22796733 (-)
LOC110537223 LOC106568102 coding downstream 44402 22769883 ~ 22779486 (-)
LOC110537220 NA coding downstream 66906 22693699 ~ 22756982 (-)
LOC110537219 LOC106603252 coding downstream 153210 22665662 ~ 22670678 (-)
LOC118937647 NA coding downstream 158270 22663283 ~ 22665618 (-)
LOC110537225 LOC106568098 coding upstream 2629 22862262 ~ 22869968 (-)
LOC110537227 LOC106568097 coding upstream 19552 22879185 ~ 22881924 (-)
LOC118937815 LOC106568112 coding upstream 578085 23437718 ~ 23438711 (-)
LOC118937816 LOC106568112 coding upstream 593844 23453477 ~ 23454855 (-)
LOC110536822 LOC106568111 coding upstream 597950 23457583 ~ 23460327 (-)
G1050157 NA non-coding downstream 1449 22822216 ~ 22822439 (-)
G1050156 NA non-coding downstream 2170 22821516 ~ 22821718 (-)
G1050155 NA non-coding downstream 2402 22821041 ~ 22821486 (-)
G1049753 NA non-coding downstream 63495 22760152 ~ 22760393 (-)
G1049726 NA non-coding downstream 122916 22700598 ~ 22700972 (-)
G1050227 NA non-coding upstream 131377 22991010 ~ 22992778 (-)
G1050335 NA non-coding upstream 243039 23102672 ~ 23121201 (-)
G1050364 NA non-coding upstream 285619 23145252 ~ 23163148 (-)
G1050382 NA non-coding upstream 314775 23174408 ~ 23174772 (-)
G1050420 NA non-coding upstream 371303 23230936 ~ 23231137 (-)
G1049722 NA other downstream 134291 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 182289 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 277231 22540032 ~ 22546807 (-)
G1049389 NA other downstream 483379 22337086 ~ 22340509 (-)
G1049089 NA other downstream 698984 22113948 ~ 22178642 (-)
G1050429 NA other upstream 384004 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1695064 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1744647 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2764246 25623879 ~ 25624637 (-)
G1054232 NA other upstream 2797636 25657269 ~ 25659005 (-)

Expression


Co-expression Network