LOC110537225 (LOC106568098)


Basic Information

Item Value
gene id LOC110537225
gene name LOC106568098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 22862262 ~ 22869968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623106.2
TTCCAGCCGCCTCCCCAACATGACATGAGGGCCCATCGCACCATGCGTACTAGCAAGAACAAACCGGCTTGAGTGGAGCTACTACTCGACAACGTCAGGGCTGACGACAACTACTAAATAGCTGTCATTTGAGAGATAAAGTGCAGACAGAACGGCGCTTTGGGGTCCTGAATAGACTACGGAAGAAATGGCGGACGACCCCAACGCAGCGGATAGGAACGTGGAGATATGGAAGATAAAGAAGTTGATCAAAAGTCTGGAAGCTGCTCGGGGGAATGGCACGAGTATGATATCCCTGATCATCCCACCTAAGGACCAGATCTCCAGAGTGGCCAAGATGTTGGCTGATGAGTTTGGCACTGCATCCAACATTAAAAGCAGAGTCAACAGGCTCTCTGTGCTTGGAGCCATCACCTCTGTACAGCAGAGACTcaaactctaccataaagTGCCTCCCAACGGCTTGGTTGTGTACTGTGGCACCATTGTGACTGATGAGGGCAAAGAGAAAAAAGTCAATATCGACTTTGAGCCTTTTAAACCCATCAACActtctctgtatctctgtgaCAACAAGTTCCACACAGAGGCTCTTACAGCATTGCTCTCAGATGACAGCAAGTTTGGTTTCATTGTGATTGATGGAAGTGGCGCCCTCTTCGGAACCCTACAGGGCAACACCAGGGAGGTGCTGCATAAGTTCACAGTGGACCTACCCAAGAAGCACGGCAGAGGAGGACAGTCTGCCTTGCGTTTTGCTCGTTTGAGGATGGAGAAGAGACATAACTACGTGCGGAAGGTGGCAGAGACGGCAGCCACACTTTTTTTGTGCAACGACAAGGTCAACGTAGCAGGCATGGTCTTAGCTGGTTCAGCTGACTTCAAGACGGAGCTCAGCCAGTCAGACATGTTTGACCCGAGGCTTCAAGCTAAGATCCTGAAGCTGGTTGACATATCATATGGTGGGGAGAATGGCTTCAACCAGGCCATTGAACTGTCCGCAGAAGTGCTTACCAATGTCAAATTCATCCAGGAGAAGAAACTAATAGGACGATACTTTGATGAGATCAGCCAGGATACGGGGAAGTACTGCTTTGGGGTGGAAGACACACTGAAAGCCATGGAAATGGGTGCTGTTGAGATCCTGATTGTTTATGAGAACCTGGATACCATGAGATACATCCTACGTTGCCATGGAGCAGAGGGACTTGCTATGGCGGAGAAGGGTACCGATGAGAAGACATTGTATTTGACGCCAGAGCAGGAAAAAGACAAGTCTCACTTCACAGACAAAGAGACTGGTCAGGACCATGAGCTGATCGAGAGCTTGCCATTACTTGAATGGTTCGCCAATAGCTATAAGAAGTTTGGAgcctgtctggagattgtcactGACAAGAGCCAAGAAGGATCCCAGTTTGTAAAAGGCTTTGGTGGAATTGGTGGGATCTTGCGGTACAGGGTGGATTTCCAGGCCATAGAGTACCAAGGAGAAGACGATGAGTTATTTGATTTGGATGACTACTAGGTAGTTGAGGCTGACgtgaggaaaaaaaaaaaacattcatcaATTGAAGGCTTTCCCTGATTTGACCAAGACTGGTGGAGGGAAAGCAAGTCGTCAGGAGACAGACCTAGACCTTCAAACAAAAGAGATAGACGTGATGGCGTATATCAATGGATCCCTGACTTGAAGCAGTGACTCCATCTCCTGTTCGAGGGAGCTTGTCTTGGTTTGTTTCTCTCCACTTAATGACGGATTCAAAGTGACTGACAGCAAGGCCATGCTCCTCCTGCCTGCTTGGCCTGCTCTAGGCCACAGTGATAGAAACCCGTTTTTCTCATCACTCCCTACTTTCTTCTTATCAATGCAATTTCCCTCTATCTTTTTGTCTTTTTTTACTGGTACTTGCTGCTGTTGTGTTTTATGAGATTCTGATTATTTTGTTTtccttttttaaataaaaataatgtagTGGGCAGGGAAAAAATAATTCAATTGGAACTGCTTGACTTCCATATCCTGCCTCCTATCTTTAATTCAGtacctgctttgttttgtccCATTTTCCCCTCTGGTAATTATCCACTGTTGCAGGTGCTGTACTCTGAGCCTATACTGTTCTCTTGTACCTGTTTTCATTTCGAGGACCTGTGTCCTTTATTACTCATACAGACTTCCCAGAGCTGAGATTTAGAATTGTACAGCTACATTGTCTGTTTTTATATTGCCTTGTACACTACACACCCTCACCAATCTGTCTCATTCAGTATAATGAACCATGCCCTCAGTGCTGTGCACCATGCATACTTTCATGTTCCCCAGAGGCATCTGTGTCCAATGTTAACTGTGATTGATTGTCTGAATTGCACAGTGACAGGAAACTGACCAATCTGAGAGCTAGTGTGGTTGTTGTTAGGCAGTTGTGTGTGGCTTGACTTCCAGGCATATTACTGGTATGAGTAATCCTCTAGTTCTATCGACATCAATTGAAACTTGAATGTGGATACTGCCAATACAAAAGTTGAGTGCAgcccctcttccccccccccctcccctactGTTACATACTGTTGGATTGAAAGACTCCTGCCAAGCTCTGTTTCTCCCTACCAACAAGTCACAGAACATTTTGGTCAGAGGCACTGGATGTTTATTTGGGGGTATTTGTGGCTTGCATGGTCTAAAAAAAGAAATTGTCAGCCTGAATGTGagctatatatataaaaaaaaaaaaaaaagctttaagGGCCTTGACTATTGTCTGAATCTGGCACGTAAGAATGGTGTGTTGTGATGGTTCTCCATAGTTCATTTCGGGGCACAGTGAGCAGTTTTATCTATTTATGAATGTGATGAGTCTACTTTGCAACATCAAGCCCATATTATGACATTTTCTAGATTTCATCTATTCATCTGTCACCATTTTGTATGAGACGTATTAAATGTCCTCATTGTTTGCA
>XM_021623107.2
TTCCAGCCGCCTCCCCAACATGACATGAGGGCCCATCGCACCATGCGTACTAGCAAGAACAAACCGGCTTGAGTGGAGCTACTACTCGACAACGTCAGGGCTGACGACAACTACTAAATAGCTGTCATTTGAGAGATAAAGTGCAGACAGAACGGCGCTTTGGGGCAAGTACAGTCCTGAATAGACTACGGAAGAAATGGCGGACGACCCCAACGCAGCGGATAGGAACGTGGAGATATGGAAGATAAAGAAGTTGATCAAAAGTCTGGAAGCTGCTCGGGGGAATGGCACGAGTATGATATCCCTGATCATCCCACCTAAGGACCAGATCTCCAGAGTGGCCAAGATGTTGGCTGATGAGTTTGGCACTGCATCCAACATTAAAAGCAGAGTCAACAGGCTCTCTGTGCTTGGAGCCATCACCTCTGTACAGCAGAGACTcaaactctaccataaagTGCCTCCCAACGGCTTGGTTGTGTACTGTGGCACCATTGTGACTGATGAGGGCAAAGAGAAAAAAGTCAATATCGACTTTGAGCCTTTTAAACCCATCAACActtctctgtatctctgtgaCAACAAGTTCCACACAGAGGCTCTTACAGCATTGCTCTCAGATGACAGCAAGTTTGGTTTCATTGTGATTGATGGAAGTGGCGCCCTCTTCGGAACCCTACAGGGCAACACCAGGGAGGTGCTGCATAAGTTCACAGTGGACCTACCCAAGAAGCACGGCAGAGGAGGACAGTCTGCCTTGCGTTTTGCTCGTTTGAGGATGGAGAAGAGACATAACTACGTGCGGAAGGTGGCAGAGACGGCAGCCACACTTTTTTTGTGCAACGACAAGGTCAACGTAGCAGGCATGGTCTTAGCTGGTTCAGCTGACTTCAAGACGGAGCTCAGCCAGTCAGACATGTTTGACCCGAGGCTTCAAGCTAAGATCCTGAAGCTGGTTGACATATCATATGGTGGGGAGAATGGCTTCAACCAGGCCATTGAACTGTCCGCAGAAGTGCTTACCAATGTCAAATTCATCCAGGAGAAGAAACTAATAGGACGATACTTTGATGAGATCAGCCAGGATACGGGGAAGTACTGCTTTGGGGTGGAAGACACACTGAAAGCCATGGAAATGGGTGCTGTTGAGATCCTGATTGTTTATGAGAACCTGGATACCATGAGATACATCCTACGTTGCCATGGAGCAGAGGGACTTGCTATGGCGGAGAAGGGTACCGATGAGAAGACATTGTATTTGACGCCAGAGCAGGAAAAAGACAAGTCTCACTTCACAGACAAAGAGACTGGTCAGGACCATGAGCTGATCGAGAGCTTGCCATTACTTGAATGGTTCGCCAATAGCTATAAGAAGTTTGGAgcctgtctggagattgtcactGACAAGAGCCAAGAAGGATCCCAGTTTGTAAAAGGCTTTGGTGGAATTGGTGGGATCTTGCGGTACAGGGTGGATTTCCAGGCCATAGAGTACCAAGGAGAAGACGATGAGTTATTTGATTTGGATGACTACTAGGTAGTTGAGGCTGACgtgaggaaaaaaaaaaaacattcatcaATTGAAGGCTTTCCCTGATTTGACCAAGACTGGTGGAGGGAAAGCAAGTCGTCAGGAGACAGACCTAGACCTTCAAACAAAAGAGATAGACGTGATGGCGTATATCAATGGATCCCTGACTTGAAGCAGTGACTCCATCTCCTGTTCGAGGGAGCTTGTCTTGGTTTGTTTCTCTCCACTTAATGACGGATTCAAAGTGACTGACAGCAAGGCCATGCTCCTCCTGCCTGCTTGGCCTGCTCTAGGCCACAGTGATAGAAACCCGTTTTTCTCATCACTCCCTACTTTCTTCTTATCAATGCAATTTCCCTCTATCTTTTTGTCTTTTTTTACTGGTACTTGCTGCTGTTGTGTTTTATGAGATTCTGATTATTTTGTTTtccttttttaaataaaaataatgtagTGGGCAGGGAAAAAATAATTCAATTGGAACTGCTTGACTTCCATATCCTGCCTCCTATCTTTAATTCAGtacctgctttgttttgtccCATTTTCCCCTCTGGTAATTATCCACTGTTGCAGGTGCTGTACTCTGAGCCTATACTGTTCTCTTGTACCTGTTTTCATTTCGAGGACCTGTGTCCTTTATTACTCATACAGACTTCCCAGAGCTGAGATTTAGAATTGTACAGCTACATTGTCTGTTTTTATATTGCCTTGTACACTACACACCCTCACCAATCTGTCTCATTCAGTATAATGAACCATGCCCTCAGTGCTGTGCACCATGCATACTTTCATGTTCCCCAGAGGCATCTGTGTCCAATGTTAACTGTGATTGATTGTCTGAATTGCACAGTGACAGGAAACTGACCAATCTGAGAGCTAGTGTGGTTGTTGTTAGGCAGTTGTGTGTGGCTTGACTTCCAGGCATATTACTGGTATGAGTAATCCTCTAGTTCTATCGACATCAATTGAAACTTGAATGTGGATACTGCCAATACAAAAGTTGAGTGCAgcccctcttccccccccccctcccctactGTTACATACTGTTGGATTGAAAGACTCCTGCCAAGCTCTGTTTCTCCCTACCAACAAGTCACAGAACATTTTGGTCAGAGGCACTGGATGTTTATTTGGGGGTATTTGTGGCTTGCATGGTCTAAAAAAAGAAATTGTCAGCCTGAATGTGagctatatatataaaaaaaaaaaaaaaagctttaagGGCCTTGACTATTGTCTGAATCTGGCACGTAAGAATGGTGTGTTGTGATGGTTCTCCATAGTTCATTTCGGGGCACAGTGAGCAGTTTTATCTATTTATGAATGTGATGAGTCTACTTTGCAACATCAAGCCCATATTATGACATTTTCTAGATTTCATCTATTCATCTGTCACCATTTTGTATGAGACGTATTAAATGTCCTCATTGTTTGCA

Function

NR:

description
PREDICTED: eukaryotic peptide chain release factor subunit 1-like

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K03265 ETF1, ERF1; peptide chain release factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623106.2 False 2964 mRNA 0.45 11 22862262 22869968
XM_021623107.2 True 2973 mRNA 0.45 11 22862262 22869968

Neighbor

gene id symbol gene type direction distance location
LOC110537224 LOC106568099 coding downstream 2629 22823888 ~ 22859633 (-)
LOC118937814 NA coding downstream 65529 22792108 ~ 22796733 (-)
LOC110537223 LOC106568102 coding downstream 82776 22769883 ~ 22779486 (-)
LOC110537220 NA coding downstream 105280 22693699 ~ 22756982 (-)
LOC110537219 LOC106603252 coding downstream 191584 22665662 ~ 22670678 (-)
LOC110537227 LOC106568097 coding upstream 9217 22879185 ~ 22881924 (-)
LOC118937815 LOC106568112 coding upstream 567750 23437718 ~ 23438711 (-)
LOC118937816 LOC106568112 coding upstream 583509 23453477 ~ 23454855 (-)
LOC110536822 LOC106568111 coding upstream 587615 23457583 ~ 23460327 (-)
LOC110537230 LOC106568094 coding upstream 849130 23719098 ~ 23951744 (-)
G1050165 NA non-coding downstream 33155 22828245 ~ 22829107 (-)
G1050157 NA non-coding downstream 39823 22822216 ~ 22822439 (-)
G1050156 NA non-coding downstream 40544 22821516 ~ 22821718 (-)
G1050155 NA non-coding downstream 40776 22821041 ~ 22821486 (-)
G1049753 NA non-coding downstream 101869 22760152 ~ 22760393 (-)
G1050227 NA non-coding upstream 121042 22991010 ~ 22992778 (-)
G1050335 NA non-coding upstream 232704 23102672 ~ 23121201 (-)
G1050364 NA non-coding upstream 275284 23145252 ~ 23163148 (-)
G1050382 NA non-coding upstream 304440 23174408 ~ 23174772 (-)
G1050420 NA non-coding upstream 360968 23230936 ~ 23231137 (-)
G1049722 NA other downstream 172665 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 220663 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 315605 22540032 ~ 22546807 (-)
G1049389 NA other downstream 521753 22337086 ~ 22340509 (-)
G1049089 NA other downstream 737358 22113948 ~ 22178642 (-)
G1050429 NA other upstream 373669 23243637 ~ 23244270 (-)
G1052040 acaca other upstream 1684729 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1734312 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2753911 25623879 ~ 25624637 (-)
G1054232 NA other upstream 2787301 25657269 ~ 25659005 (-)

Expression


Co-expression Network