LOC118937816 (LOC106568112)


Basic Information

Item Value
gene id LOC118937816
gene name LOC106568112
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 23453477 ~ 23454855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939497.1
agaagcaataaaactggccttctttagactagttgagtatctggagcatcagcatttgtaattacaaattacaaacttcagaagctttTTCAAACCTCCaatacaagttttacatttcctaaCACTAAATGCTTTGGTGGTGTTTTTGTGTGCCGTGATACTCTGAGGAGGGGGAGTGTATGTTTGTCACTCAGGTATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGCTGACCTGACAGAGTCACACACAGGACTAAGCAAGAGCAGGACCTCAGTATTTTGAACCTTTATTACAAATGGAGGAACACGAAGATGCTCAGAACTGTTTTCCAGAACATAACTCTTCTTGCAGAAAGGTTTTGCTATCAACATCGATTTACATAACACTGTACATATTCTTCTTATCAATTGGAGCGGTTACAGTCTTTTTGAACATATTGGTGGTCATCTCTATCTTTCACTTCAAGCAGCTCCACACTCCAACCAATCTGCTCATCCTTTCTCTGGCTGTGGCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAGGGACCGTAGCAATAATGGAATCATGTTGGTTTTTGGGgaaatatttctgtgtgttttatGTCTACATCAGTTATTTCATTCTATCCTTATCTCTCGGCAATTTGGTATTGATATCTATTGACCGCTATGTTGATGGTGGGGGTTCCCTTATTTTACCActCTTTCTGCCATTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAaaacaggacatgtttgtCCTCTACAAATAG

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939497.1 True 812 mRNA 0.39 3 23453477 23454855

Neighbor

gene id symbol gene type direction distance location
LOC118937815 LOC106568112 coding downstream 14766 23437718 ~ 23438711 (-)
LOC110537227 LOC106568097 coding downstream 571553 22879185 ~ 22881924 (-)
LOC110537225 LOC106568098 coding downstream 583509 22862262 ~ 22869968 (-)
LOC110537224 LOC106568099 coding downstream 593844 22823888 ~ 22859633 (-)
LOC118937814 NA coding downstream 656744 22792108 ~ 22796733 (-)
LOC110536822 LOC106568111 coding upstream 2728 23457583 ~ 23460327 (-)
LOC110537230 LOC106568094 coding upstream 264243 23719098 ~ 23951744 (-)
LOC110537232 LOC106568092 coding upstream 570519 24025374 ~ 24046364 (-)
LOC110537233 LOC106568122 coding upstream 595019 24049874 ~ 24058463 (-)
LOC110537234 LOC106568091 coding upstream 607618 24062473 ~ 24090094 (-)
G1050556 NA non-coding downstream 57480 23395796 ~ 23395997 (-)
G1050554 NA non-coding downstream 59482 23393773 ~ 23393995 (-)
G1050552 NA non-coding downstream 61098 23392119 ~ 23392379 (-)
G1050532 NA non-coding downstream 76257 23376946 ~ 23377220 (-)
G1050523 NA non-coding downstream 79855 23373409 ~ 23373622 (-)
G1050657 NA non-coding upstream 27123 23481978 ~ 23482237 (-)
G1051273 NA non-coding upstream 285051 23739906 ~ 23821981 (-)
G1051311 NA non-coding upstream 353381 23808236 ~ 23808596 (-)
G1051317 NA non-coding upstream 359229 23814084 ~ 23837332 (-)
G1051342 NA non-coding upstream 409175 23864030 ~ 23865163 (-)
G1050429 NA other downstream 209207 23243637 ~ 23244270 (-)
G1049722 NA other downstream 763880 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 811878 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 906820 22540032 ~ 22546807 (-)
G1049389 NA other downstream 1112968 22337086 ~ 22340509 (-)
G1052040 acaca other upstream 1099842 24554697 ~ 24555000 (-)
LOC118936414 NA other upstream 1149425 24600309 ~ 24607820 (-)
G1054211 NA other upstream 2169024 25623879 ~ 25624637 (-)
G1054232 NA other upstream 2202414 25657269 ~ 25659005 (-)
G1055010 NA other upstream 3525928 26980783 ~ 26982355 (-)

Expression

LOC118937816(LOC106568112) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118937816(LOC106568112) Expression in each Bioproject

Bar chart with 4 bars.
LOC118937816(LOC106568112) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Co-expression Network