LOC110537233 (LOC106568122)


Basic Information

Item Value
gene id LOC110537233
gene name LOC106568122
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 24049874 ~ 24058463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623120.2
CAGGAAGTGAGGTAAAGAACATATGTAGGTGGTCCACAAAGTGATCACAATAGAAAAGATTTCACATGAATTTGGATAGAAGGTGTTTGAATATCTACCTGCATGGGCTCTATGGATGAAGGCAATGTGCGCACTCAAAAGAACAATGTCATATGTGAATACAAGCAACAATCACACAGAAACCTCCCTCATCAGCAACGTAACAAGACCTTCAAATATAATACATTATCTTGATAATACATTCTCAACAGATCCTGTAGTAGATGGTGTCAAATTTAATGGGATGTTCTACATTTTAATCGGTATTTCTGGGTTTACTGTTACCATTGTCCTTTTACTGGCCATTCTGTGGACAATGAAGTATCGCACTTTGATTCACACCATTCGAGAGCTGAAGGGTGTTGAGGGTCTATTGGGCAGAGCTCCTCCATCCAACCCCCCAGCTCTAAGTCCCCTAACCTTGAGAAAGTGTCTAGTGCGTGAGACTAGAATCCCACTAGAGCTTGTCTCTGTCACTCTGGGACAGGAGTATCAGAACACTAGCTCGCCCACTCCCCTGCTCAGGCAGACAATCGAGTCAGCTTCTAGGTCTCTCTGGAGACCACAGCAAACGGGTTCCTGCTTCAACACATCAGGGCTGGGCATGCAGCAACTCATCAAAGCAGGGAGGGAAGGGGTGTACTACAAGGCTAAGATGACGCGTGGCACCTGCAAGGGTCACTCCATTGTCACCTGCAAGATGACCAAAGAGGGGGTTACCCACAGGAGGGTAGCCAGGGAGGTGAACATCATGAGGAAGCTGGGTACCCACAAGAACGTGCTGCAGCTGCTAGACTGGAACATCACACAGGCTCCTTACATGCTGATCCTGGAGTCGGTGAGCAGTGGGACCCTGCGAAGTTTCCTGCAAGTGAATCAACACCAACTGAGCAGGGACAGTGATCTGCAAAAGCACTTCACCACAGCAGCATATCACATTGCCCATGCAATGAGACACCTGCGCTCTAAAATGGTGGTGCACTGTGACCTAGCCCTGAGGAACATCATGGTTAACCATTTCCCCAGAGAGGTGAAGCTGGCGGAGTTTGGACTAGCCCAAGACCTGACTCTTTTGAGCAGCCGTCGCAGCAGCCACAAAGGAAACCACTTGCAAAAGGTGCCCCTGCGTTGGTATCCCCCAGAGTACTTCAGAAACAACTACTACAGCTTCAAAGGGGATGTCTGGGCATTTGGCATTGTGCTGTGGGAGATGCAAACATTTGGGACCTTACCATATCCCAACCTGGAGACTTTAGAGTTGGTGGTGCGCTACATCTGCTCTGGACACAGGAACTCAGAACCAGAGACATGTAGGCCAGAGATACTGCAGATGATGAAGGACTGCTGGCTGGAGTCCTACACCCAAAGGCCCTCCTTCAACAACATAGTCAGTGTCCTGGAGAACATCCTGGAGGATGATGCAGATTACATCAAAGTGAACAACAGACTAGCCAATGTTGGATATGGCGACCAAGATCAAGTCTGCCTTACTCTCCTTCATTACGACTGAATAtgtgcagagaggaagaggtgaagcctCAGTATATAGATCAGCTTTGATATGTGCAAGTTACTTCATGCATAACATGTTTGGATGTGCATGTTTGCAAAATCTGCTTTTTCTTTTACTTAGGGAAGTAGGTCTACTACAATGACATTAAACTGAGTGGACAAAACTTTAGGAACAGGTATTTAATATTAAGTTGCACTtcccttttgctctcagaacagcctcaattcatcggggcatcgGGGCagactacaaggtgtcaaaagcattccacatggatgctggcccatgttcactccaatgct
>XM_036937245.1
CAGGAAGTGAGGTAAAGAACATATGTAGGTGGTCCACAAAGTGATCACAATAGAAAAGATTTCACATGAATTTGGATAGAAGGTGTTTGAATATCTACCTGCATGGGCTCTATGGATGAAGGCAATGTGCGCACTCAAAAGAACAATGTCATATGTGAATACAAGCAACAATCACACAGAAACCTCCCTCATCAGCAACGTAACAAGACCTTCAAATATAATACATTATCTTGATAATACATTCTCAACAGATCCTGTAGTAGATGGTGTCAAATTTAATGGGATGTTCTACATTTTAATCGGTATTTCTGGGTTTACTGTTACCATTGTCCTTTTACTGGCCATTCTGTGGACAATGAAGTATCGCACTTTGATTCACACCATTCGAGAGCTGAAGGGTGTTGAGGGTCTATTGGGCAGAGCTCCTCCATCCAACCCCCCAGCTCTAAGTCCCCTAACCTTGAGAAAGTGTCTAGTGCGTGAGACTAGAATCCCACTAGAGCTTGTCTCTGTCACTCTGGGACAGGAGTATCAGAACACTAGCTCGCCCACTCCCCTGCTCAGGCAGACAATCGAGTCAGCTTCTAGGTCTCTCTGGAGACCACAGCAAACGGGTTCCTGCTTCAACACATCAGGGCTGGGCATGCAGCAACTCATCAAAGCAGGGAGGGAAGGGGTGTACTACAAGGCTAAGATGACGCGTGGCACCTGCAAGGGTCACTCCATTGTCACCTGCAAGATGACCAAAGAGGGGGTTACCCACAGGAGGGTAGCCAGGGAGGTGAACATCATGAGGAAGCTGGGTACCCACAAGAACGTGCTGCAGCTGCTAGACTGGAACATCACACAGGCTCCTTACATGCTGATCCTGGAGTCGGTGAGCAGTGGGACCCTGCGAAGTTTCCTGCAAGTGAATCAACACCAACTGAGCAGGGACAGTGATCTGCAAAAGCACTTCACCACAGCAGCATATCACATTGCCCATGCAATGAGACACCTGCGCTCTAAAATGGTGGTGCACTGTGACCTAGCCCTGAGGAACATCATGGTTAACCATTTCCCCAGAGAGGTGAAGCTGGCGGAGTTTGGACTAGCCCAAGACCTGACTCTTTTGAGCAGCCGTCGCAGCAGCCACAAAGGAAACCACTTGCAAAAGGTGCCCCTGCGTTGGTATCCCCCAGAGTACTTCAGAAACAACTACTACAGCTTCAAAGGGGATGTCTGGGCATTTGGCATTGTGCTGTGGGAGATGCAAACATTTGGGACCTTACCATATCCCAACCTGGAGACTTTAGAGTTGGTGGTGCGCTACATCTGCTCTGGACACAGGAACTCAGAACCAGAGACATGTAGGCCAGAGATACTGCAGATGATGAAGGACTGCTGGCTGGAGTCCTACACCCAAAGGCCCTCCTTCAACAACATAGTCAGTGTCCTGGAGAACATCCTGGAGGATGATGCAGTGAGTGTGGCGTTTTCAGTTACCGTTCCCCTTGCATCTCCCATCCTTTTCTGTTGTAAAAACGTATTTAAGAGGCAATCTAGGCATGCAAAATGTTACCTTTCCATGCAGTAATTTGTGTTTGTATATTGTCTGCAGGATTACATCAAAGTGAACAACAGACTAGCCAATGTTGGATATGGC

Function

NR:

description
fibroblast growth factor receptor homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623120.2 False 1854 mRNA 0.47 12 24049874 24058463
XM_036937245.1 True 1645 mRNA 0.48 11 24050221 24058463

Neighbor

gene id symbol gene type direction distance location
LOC110537232 LOC106568092 coding downstream 3510 24025374 ~ 24046364 (-)
LOC110537230 LOC106568094 coding downstream 98130 23719098 ~ 23951744 (-)
LOC110536822 LOC106568111 coding downstream 589547 23457583 ~ 23460327 (-)
LOC118937816 LOC106568112 coding downstream 595019 23453477 ~ 23454855 (-)
LOC118937815 LOC106568112 coding downstream 611163 23437718 ~ 23438711 (-)
LOC110537234 LOC106568091 coding upstream 4010 24062473 ~ 24090094 (-)
LOC110537235 LOC106568090 coding upstream 37017 24095480 ~ 24122061 (-)
LOC118936414 NA coding upstream 541846 24600309 ~ 24607820 (-)
LOC110537239 aatf coding upstream 549783 24608246 ~ 24617116 (-)
LOC110537240 lhx1 coding upstream 558720 24617118 ~ 24623412 (-)
G1051416 NA non-coding downstream 25554 24023093 ~ 24024320 (-)
G1051342 NA non-coding downstream 184711 23864030 ~ 23865163 (-)
G1051317 NA non-coding downstream 212542 23814084 ~ 23837332 (-)
G1051273 NA non-coding downstream 227893 23739906 ~ 23821981 (-)
G1051475 NA non-coding upstream 19947 24078410 ~ 24083559 (-)
G1051571 NA non-coding upstream 148097 24206560 ~ 24206833 (-)
G1051622 NA non-coding upstream 180209 24238672 ~ 24238971 (-)
G1051646 NA non-coding upstream 197836 24256299 ~ 24256498 (-)
G1051652 NA non-coding upstream 202503 24260966 ~ 24261188 (-)
G1050429 NA other downstream 805604 23243637 ~ 23244270 (-)
G1049722 NA other downstream 1360277 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 1408275 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 1503217 22540032 ~ 22546807 (-)
G1049389 NA other downstream 1709365 22337086 ~ 22340509 (-)
G1052040 acaca other upstream 496234 24554697 ~ 24555000 (-)
G1054211 NA other upstream 1565416 25623879 ~ 25624637 (-)
G1054232 NA other upstream 1598806 25657269 ~ 25659005 (-)
G1055010 NA other upstream 2922320 26980783 ~ 26982355 (-)

Expression


Co-expression Network