LOC110537234 (LOC106568091)


Basic Information

Item Value
gene id LOC110537234
gene name LOC106568091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 24062473 ~ 24090094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623121.2
CGTCAGTAGACGCATAGCCGGCTACATTATTAGATAGTTATGACTGCCGTGTGTGTATAAGCTAAACCTACAAAGCAGTTCATAACAACCTGCTTTATTTGTTAAGATGTTGCTATGAAATTAGAAAAACATGGGAGCTAAAGAGTCAAGGATAGGTTTCCTCTCGTACGAAGAGGCCATCAACAGAGTAACTAATGTGGAACTCCAGCGTCTGAAGGATGCCTTCCGGAGGACCAGTGGCCTGTCCTGTTACATGAGCCAGCAGTGCTTCCTCAGGGAGGTGCTGGGAGAAGTCGTACCACCCAGGATTGCTGAGGTGATATACAGCTCATTCGGTGGGACCTCTAAAGGCCTGCACTTCAACAATCTAATTGTTGGCCTGGTTCTCTTGACTAGAGGGCGTGATGAAGAAAAAGCTAAATACATTTTCAGTCTGTTTGCCAGCGATTTGGGCAATCATGCAACGCGAGAGGACATGGAAAGCATGCTGCAGACTGTGGATGGAGAGATCCCACTTTCTCTCAGGAAGTGTTTCTCTGAGGGTGAGAAGGTAAATTATGAGAAATTTAAGAGCTGGCTCCTGCAGAACAAGGATGCCTTCACCTTCTCCCGCTGGCTCCTGTCCAGTGGGGTGTGTGTCACCCTGACAGACGATAGTGACACACCCACCTTCTACCAGACCTTGGCTGGAGTAACACACTTAGAGGAATCAGATATCATTGACCTGGAGAAGAGATACTGGCTGCTGAAAGCTCAGTCTCGGACAGGACGATTTGACCTGGAAACCTTTGTCGCTTTAGTTTCACCCACTATTCATACATCCCTAAGTGAAGGTTTGTTTCATGCCTTTGATGAAAACAGGGACAATCACATAGATTTTAAGGAAATCTCATGTGGACTATCTGCTTGCTGCAGAGGGCCtttggcagagagacagaagtTCTGTTTCAAAGTGTTTGACGTTGACCATGATGGGCTTCTGTCTCGAAAGGAAATCACAGAAATGGTTGGGGCATTACTGGAGGTGTGGAAAGACAATCGCATAGACCTTCTACCTGAAGCGGACACTAATGTCCATGCCGTTGTGGAAGACATCCTGAAGGAGCATGACACCACTAAGCAAGGGCATTTGACCCTGGAGGACTACCAAATATGGAGTGTGAAGAGTGCATTTGCCAATGAGTTCCTCAACCTGCTGTTTCAGGTGTGTCATATTGTCCTGGGGCTGCGGCCTGCTTCCCCTGAAGAGGAGGGACAGATAATcagGGGCTGGTTGGAGAGGGCGAGCAGACACGGCCTCCAGCCAGGAGACTACTGGTTCCTCATAGCAGTGCCATGGTGGCAGCAGTGGAGGGACTACGTTAAATATGATAACAAGCATATTGTGGTGGAGCAGCCATTAGTGTTTGACACAGTGAGGAGTGGTGTAGGGATCGGAACCCAGGCCAGGGCAGAGCAAGGCCCAGAGGGGGAGAGCATGGCCAGCTCCCACAGCTCCACAGAGGAGAAGTTCGCAGACAACATCTCCAGTGCATCAGAGGCCTCCGAGACGACCAGCGGCAGCCTTCTACCCCGGGGCTCGACTGCTACGGATATCTGCTTTGCCCGTCAGCATGGTGACACAGACAACCAGTGCTTCCTGGGGGCTGATGGGAACATGGTGGTTCTAAGGCCTGGGGCCATCGATAACCAGCCTCTGGTCAGATCAGAGCCCTTAAAGGCTCCCACATTGACAATGGAGGGGGGCCTACTGAGGCGCTCCCCGTCCCTGATTCTAGGCAGGGACTTTGAGGTTGTGCCAGAGCCTGTGTGGAGGGCACTCTACCACTGGTACGGAGCCAACCTGGGTCTCCCCAGGCCGGTGATCAGAAACACCAAGACAGACTGTGCTGAGCTGGAGCTGTTACCCCGACACCTGCTCTTCCTGAGGCAGCAGCAGCCCCCCCCCCGCACCCCCCAGACCAACGTCTGGGTCAATATGGGTAACGTTCCCTCTGCTAGTGCCCCCCTAAAGCGTGTGTTGGTCTACACGGGCTGTTTCAGTAGGGTGGGCACCATCAAGGACATCCATGAATACCTGTCCCAGAGACTCCGCATCAAGGAGGAAGACATGCGCCTCTGGCTCTACAACAGTGAGAATTATCTGACCCTCCTTGATGATGAAGACCATTCCCTGGAGGGGTTGAAGATTCCAGATGAACAGTACATGGTCATAGAAGTTCGGAACAAGGACATGAGCTGGCCAGAGGAGATGTCTTTCATCGCTAACAGCAACAGGATGAACAGACACAATGTCCCTACTGAGAAAGGTGCCACTGGACTGAGCAACCTTGGCAACACGTGCTTCATGAACTCCAGTATCCAGTGTGTGAGCAACACCAAGCCTCTCACAGACTACTTCACCTCAGGAAACCACCTTTACGAACTCAACAGGACCAATCCAATTGGGATGCGGGGTCACATGGCCAAATGCTATGGTGATCTGGTTCAGGAGTTGTGGAGCGGAACACAGAAGAACTTGGCCCCTCTGAAACTCAGAtgGACGATAGCGAAGTACGCTCCCCGGTTCAATGGCTTCCAGCAGCAGGACTCCCAGGAGCTGCTAGCCTTCCTGCTGGATGGCCTTCACGAGGACCTGAACCGTGTTCACGAGAAGCCCTACGTGGAGCTGAAGGACAGCGACGGACGACCAGACTGGGAGGTTGCTTCTGAGGCGTGGGAGAATCACCTGAGGAGAAACCGTTCCATTGTGGTGGACCTGTTCCATGGCCAGCTCAGGTCACAGGTCAAGTGCAAGACCTGTGGCCACGTCAGTGCACGCTTTGATCCCTtcaacttcctctctctccctctgcccatGGATAACTCCATGCACGTAGAGATCATAGtcACTAAGCTGGATGGGTCATGCCCAGTGCGGTATGGGCTCCGGCTCAATGCGGATGAGAAGTACACAGCACTGAAGAGACTCCTGAGTGAGCTCTGCTGCCTGAATCCTGAGCAGATCCTCCTGGCTGAAGTACATGCCTCCAACATTAAGAATTTTCCACTGGACAACCAGAAAGTGCGTCGGGCGGTGAGCGGCTTCCTGTGTGCGTTTGAGATCCCGGTGCCAAGTGCACCCACGTCTGTGGTGTCCACTCCCACACAAACAGATGAAGCTCAAGCACTAGCCTATGGGAACGCTACCATGGCAACTGACAGTAACTCTCTGAACCTGGGACTGATCCCCAAGGGCATGCCCAGCACTGTGGTTCCCTGTGGCACAGAGGGCAGCCTTGCTAACGGTCTCCCCGACGGCCCCGTGGTGCTCCCATCAGACAGCCCCTTCACTGGGTACATTATCACCATCCACAGGAAGATGATGCGGGCAGAGTTATACTTCCTGTCCAGTCAGAAGAACCGCCCCAGCCTGTTTGGGATGCCGTTGATCGTGCCGTGTACAGTCCACACCAGGACCAGGGACCTGTATGATTCTGTGTGGACCCAGGTGTCGCGCCTGGCCAGTCCCTTGCCCCCTCAGGAGGCCAGCAACCACGCCCAGGACTGTGATGACAGCATGGGCTACCAGTATCCCTTCACCCTGCGCGTGGTACAGAAAGATGGCAACTCCTGCGCTTGGTGTCCATGGTACAGGTTCTGCAGAGGCTGCACAGTGGAGTGTAACAATGAGAGGGCTGCTGTGGGAAATGCCTTCATGGCTGTGGACTGGGACCCCACTGCTCTGCACCTCCGCTACCAGACCTCTcaggagaggATCGTGGAGGAGCACCCCAGTGTGGAACAGAGTCGCAGGGCCCAGGCAGAGCCCATCAGTCTGGACAGCTGTCTGCAGGCCTTTACCAGTGAGGAAGAGCTGGGAGAAGATGAGCTCTACTACTGCTCCAAGTGCAAGACCCACCGCCTGGCTACCAAGAAACTGGACCTGTGGAGGCTGCCGCCCATCCTGATAATTCATTTAAAACGGTTCCAGTTTATGAATGGGCGGTGGATCAAATCCCAGAAGATTGTTAGGTTTCCCATGGAGACGTTTGACCCCAGTGCTTTCCTGACCCCAAGAGATGCAGACCAAAGCCAAGAGAGCTGGAGGGATAAGCTGGGGGAGGAGCTACATGACACAGAGGGAGGAGTGAAAAGGTCTGGGGGTGGAGACACTGTCTGTAACCCTGCCCTGACTCTCAACAATGGGAAAGACCCTCTGTGCTCAGGGAGGATGGTCAGCACCCCCCTCAGCAGAGACGTCTGTCCCAACTGCAGCCCTGAGAGTGAGGGCAGGAGGCAGGGCCGTGGTCTGGTGTTTCCCACGGGAAGCAGGTACCAACTGTCCCTCAGTAAGGAGAGCCTGGACAGTGGCAGGGAGAGCCCCATGGAGCTGGAGGCCAGCAGGACGAGGATGGGGAGCATGGGAGAAGGCCTCAGTGACTCCACCTCTGGTGAGGACATGGCCAGAGAATGTGACAACACAAAGTCTGTGTCTGAGCTCAACAGCAATGGCTACACCGAGAACAGCATGGATCTGGAGGCCTCCCAGGGCCAAAGAGACCTGGATCCCATGTATAACTTGTATGCAATTTCATGCCATTCAGGGATCCTAGGAGGAGGCCACTATGTGACATACGCCAAAAACCCAAATGAAAAGTGGTACTGTTACAACGACAGTAGCTGTAAGGAGTTGCAGTCAGAGGAGATTGATGCAGACTCTGCCTATATCCTGTTCTATGAGCAGCAGGAAGTGGATTATTCTCTGTTCATGCCCAAAACTGACGGCAAAAAGATGGCCGACACAACTTGCATGGACGAGGACTTTGAGTCTGACTATAAGAAGTACTGTGTTCTTCAGTAATGGACTGTCTGTCGATATGTGCTGCCGGTTCATCGACATGCTTGTGCTACAAAACCACCTTACTATTTGACTGAAATCTCTCAGGTTGAGATGAGCTGAAGCTTAGAAATCATCCCTGGTGGTTAGAAGTAGACAACCATTTTTACACCTTCATAGTGGATGGACCTTTTTTTTCAAGTAATGGTACTCAAGTGTATTTCCCGCTTGCGATGTCAAACAAAACGGTGGGCTGTGTATTGGTTTGTTTTGGGGAGTGACAATGCTTAGGcccatggtgttggtcctagccCAAATGTGACAAATGTgggagtgtgtgtttttgtttgtaaaCCAATGCCAGTTGCAATATGCCATTAATGTTTCGACACATTGATTGGTACGCTCTGCAGAAACATCCCCTCATTgaataatacaaaaaaatgatTGCAGTAGAAGCAAGTGTTCACTACCTCATCATACCCTGCTTTGGACAGGAGTCAAATGCAATGTCCCAATTCTAAAATTCCCTTTTTTGTTGTCCTCCTCAAATGTAAATGATTTAGACTCCAGACCGATAGGCCTGGATTATATTCAGTGTTTCTGAACTACATTTATGTATTTACATTGCAATGTATCTTTTGTGTTTGTTTATCGTGTCAGGTCTTTTAAGAACAAAGCCTCAGACTCTCACCGATCTGAGAGGATGTTCCTGTAGCGTCTGCTTTGTACCAATTGTGTGCAGGTCCATTCCAACAACATATCAGTCTGTTCCATCACAACATTGTGATGTTATCACATCAACAGTCGTGTCATTACAGTAGTGCCACCAACAGGCTGTATCATTGTGCCCAATTTAACACAATTCTTTATAtacattaccgttcaaaagtttgaggtcacttagaaatgtctgtTTTTGAAAGAATTACACGGTttatttgtccattaaaataacatcaaattgataagatatacagtgtagacattgttaatgttatacaaaaatatatatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacagcct

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 32-like

GO: NA

KEGG:

id description
K11837 USP6_32; ubiquitin carboxyl-terminal hydrolase 6/32

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623121.2 True 5884 mRNA 0.51 34 24062473 24090094

Neighbor

gene id symbol gene type direction distance location
LOC110537233 LOC106568122 coding downstream 4010 24049874 ~ 24058463 (-)
LOC110537232 LOC106568092 coding downstream 16109 24025374 ~ 24046364 (-)
LOC110537230 LOC106568094 coding downstream 110729 23719098 ~ 23951744 (-)
LOC110536822 LOC106568111 coding downstream 602146 23457583 ~ 23460327 (-)
LOC118937816 LOC106568112 coding downstream 607618 23453477 ~ 23454855 (-)
LOC110537235 LOC106568090 coding upstream 5386 24095480 ~ 24122061 (-)
LOC118936414 NA coding upstream 510215 24600309 ~ 24607820 (-)
LOC110537239 aatf coding upstream 518152 24608246 ~ 24617116 (-)
LOC110537240 lhx1 coding upstream 527089 24617118 ~ 24623412 (-)
mrm1 mrm1 coding upstream 630290 24720384 ~ 24725396 (-)
G1051416 NA non-coding downstream 38153 24023093 ~ 24024320 (-)
G1051342 NA non-coding downstream 197310 23864030 ~ 23865163 (-)
G1051317 NA non-coding downstream 225141 23814084 ~ 23837332 (-)
G1051273 NA non-coding downstream 240492 23739906 ~ 23821981 (-)
G1051571 NA non-coding upstream 116466 24206560 ~ 24206833 (-)
G1051622 NA non-coding upstream 148578 24238672 ~ 24238971 (-)
G1051646 NA non-coding upstream 166205 24256299 ~ 24256498 (-)
G1051652 NA non-coding upstream 170872 24260966 ~ 24261188 (-)
G1051654 NA non-coding upstream 171796 24261890 ~ 24262095 (-)
G1050429 NA other downstream 818203 23243637 ~ 23244270 (-)
G1049722 NA other downstream 1372876 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 1420874 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 1515816 22540032 ~ 22546807 (-)
G1049389 NA other downstream 1721964 22337086 ~ 22340509 (-)
G1052040 acaca other upstream 464603 24554697 ~ 24555000 (-)
G1054211 NA other upstream 1533785 25623879 ~ 25624637 (-)
G1054232 NA other upstream 1567175 25657269 ~ 25659005 (-)
G1055010 NA other upstream 2890689 26980783 ~ 26982355 (-)

Expression


Co-expression Network