LOC110537235 (LOC106568090)


Basic Information

Item Value
gene id LOC110537235
gene name LOC106568090
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 24095480 ~ 24122061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937246.1
CAGTTTCCTttacagtctcattctgaacgtcgcataatccgggaatctgcacggacccgggtcccaccaatgagttcgtaccacaccaatcttaaCACCTCCTGCATCACTGCTTCCAGGCCCTGATGGATCATGGGGTGAAAGTCGCCTCCTTCCTGGCCAACTCCTTCAGCCGTCGCTGCTCCTACATTGCAGAGTCTGATGCCCATGTGAAAGTGAAGGCCATTCACTTTGGCTTTGTTTTAGGTGGCTTTCTGTCTGACGCAGGCTGGTATGGTGATGCAGAGAATGTGTTTCTGGCGTGTCTGCAGCTGTGCACACTGCATGATGAGGTTCTGCACTGGTACCGTGCTGTGGAGTGCTGTGTCAGGTTGCTTCATGTCCGGAATGGCAACTGCAAGTACCATCTTGGTGAAGAGACTGTCAAGTTGGCCCAGCTGTACATGGACAAACTGGCCAAACATGGTCATCAGGCCAACAAAGCTGCACTCTATGGAGAGCTGTGTGCTCTGCTCTTTGCTAAGAGCCTTTATGATGAGGCCTACAGGTGGTGCATAGAGGCAATGAAAGAGATCACAGTGGGTTTGCCTGTTAAGGTTGTGGTAGATGTCCTAAGACAGGCTTCCAAGGCCTGTGTAGTAAAGAGGGAGTTCAGGAAGGCAGAGCATCTGATAAAGCATGCTGTTTTCCTGGCACGTGAGCATTTTGGACACAAGCATCCCAAGTATTCAGACACTCTCCTTGATTATGGTTTTTATTTGCTGAATGTGGATAACATCTGCCAATCAGTTGCAATATACCAGACGGCTCTAGATATCCGGCAGTCGGTTTTCGGGGGAAAGAATATCCATGTGGCCACAGCACACGAGGACCTTGCATACTCCTCCTATGTGCATCTGTACAGCTCTGGCAAATTTGACAATGCACTATTCCATGCAGAGCGGGCCATAGACATTATCACTCACATTCTCCCTGAGGATCATCTGCTGCTGGCCTCCTCCAAAAGAGTCAAAGCTCTGATCCTGGAGGAGATTGCCATTGACTGCCACAataaggagacagaggagaggctgcTCCAGGATGCCCatgacctccacctctcctctctccagctggCCAAGAAAGCCTTTGGGGAGTTCAATGTTCAGACAGCAAAGCACTATGGCAACCTGGGCCGCCTCTACCAGTCCATGAGGAAGTTCAAGGAGGCAGAGGAGATGCACATCAAAGCCATCCAGATCAAGGAGCAGCTTCTGGGTCAGGAGGACTATGAGGTGGCTCTGTCTGTGGGCCACCTAGCCTCTCTCTACAACTACGACATGAACCAGTATGAAGATGCAGAGAGGCTTTACCTGCGCTCCATTGCTATCGGTAAGAAGCTGTTTGGCGAGGGCTACAGTGGACTGGAATACGACTACAGGGGCCTAATTAAACTTTACAACTCTGTGGGGAACTATGAGAAAGTCTTTGAGTACCACAATATTTTATCCAGTTGGAACCGGCTGAGGGACCGGCAGTTTGCTGTGGCTGATGCCTTAGAGGACGTAAACACCAGCCCCCAGGCCACCGGGGAGGTGGTGCAGTCCTTCCTACTGTCACAGAACAATGGGGCTGGCCCACCTGCTTAGGctcaccacacagacacacacatgcccacATACTGATAGAAACGCTAAAGGTGTTCACGGCTCACTTACATTTGTTGAACACACCCTCTCCACATCAAGCTACATGGTTGGCCTTGCAATGGGACACCTGGCTATGGGAAAAATCACTATCGCCTGTGGAATGCATATAATCTAGTGTTTTTGTCCTCACTTTTGCGCCCAACGGGGGCATTCTCCTGTGATCAACCCATTATTGAACATTTGATGGAAGGAACCTCTTGCCATCCACTTTGCATCACCTAACATCGCTTTCATCACCTTCAGTCTTCTGTAAGAGGAATTGAGAAAAGGGTGAAAAATAAAACAACGACATCAGTGTGTTCTAGCTCTAGAATAGGAATTGGTTTGTTTTTGGCTTCATTTTTGGTCAGCGCTTGCCCTTTGTTGACCATTGGGATGTCCCCTACAAGCATGGATGGAGCACCTTTTTACTTTGGCCAATTATAAAGAGCAAGTTACTTTTTTCTGGGTGGAATCCTTATTTTATTGTTCCAATGTCATGAGGGAGTTTACAAAATAGTTTTCATTCATGGACCAAATCTTCAGTTTCCTTTTTGTAACACCTGTTTTTGTCTCCATCTAAAGACGTTGGCGCAGTCTTTATGCTTGTGCTTAAAGGTTGTCCGTGATTTGATGAATTTGAAATGCACCAGTGTGTGTATTAAATTTGACCACAATTGTGCTCAGtagatttgttgttgttgcactTACGTGTAGTTTATTTGAAAGTGTACGTGGGTACTTTATAAAGAATTTCATATAGCTAAACCAAAAACAGGTGAGCTTAAACCTGCTATTCAGATGACTCCCTCCCTGTGTTCCAGTGCAAACGCCCAGACGGAGGTCCTCTAACATCGTCCCCAGGCTATTGTGCATATAAGCCTGGTACATTGATTCAAAGTTGGCCTTAGTGGGGGTGACCGTACTGAGTAAAGTATTTGTCATTTAATTTTAGCGAATCACACAACTGCGAGGCATGGCTCTGTGCTTGTGGTATGCAAGCGTACGGGGGAGGGTTAGGGGGAAGGTTGTGGGAGATGATTGGTTGGTAGATTAAGCCTATGCTTCAGGAGTTTCTCCCGGGCATTCTGTACTGGCTAACGAAGGTCAAGTTTGACCCGTTGGACTACCGGACTCTTCGGGCATTTGGGCTGAAGTGTCTGGGAATGAGATTAGGGGTCCTCAAGCACACCATTAGCAATAGAATAGGCCTTGTGTTTTCATTTTAGAAACCATTTGCCTAGTGAAGGATTACCTATTCCAAAGTAATGTAGTAAGTACCCCATTGTGTGTGAACTAGGTCAATGGAAATTATTGCCTTGTTTTTGAACAAATGCATGTCTGTCTAATGGATGTTAATGTTACATGTGCTGTTATGTTTCAACTGAAGTCCAAGCCTTCGCCTTAAAGGACGATCAGCCAAA
>XM_021623122.2
AtgtatacatccggtgaaacatCTGTTTCTGTCTGATGGGACTGGCTCAGTGCGTATCCTCTTAGGAACATGGCCGATGGTTAGTTAATGCTGGTGCGTAACCCGATGACAGACTCAAAACTGTTTTGCTACATGAGAAGGTACAAGAAAAAGGAGTTCAAACTTGGCAaggtggttagctagctagctacggtaGATCGAGAGGGGGTGTCGCTTGCTGTAGAAAGGGAAAACAACATGGCGGCATTGGAGCTCGAATGGATCCCAGAGACTCTGTACAACACTGCTATATCAGCAGTGGTGGACAATTACAGTCGATCGCGAAGGGATATTCGTTGCATCCCTGAGAATATTCAATTTGATGTGTATTACAAGCTGTACCAGCAGGGTCGGCTCTGCCAACTGGGGGGAGAGTTTTGTGAACTGGAGGTGTTTGCCAAAGTTCTACGGGCATCTGATAAAAGaCACCTCCTGCATCACTGCTTCCAGGCCCTGATGGATCATGGGGTGAAAGTCGCCTCCTTCCTGGCCAACTCCTTCAGCCGTCGCTGCTCCTACATTGCAGAGTCTGATGCCCATGTGAAAGTGAAGGCCATTCACTTTGGCTTTGTTTTAGGTGGCTTTCTGTCTGACGCAGGCTGGTATGGTGATGCAGAGAATGTGTTTCTGGCGTGTCTGCAGCTGTGCACACTGCATGATGAGGTTCTGCACTGGTACCGTGCTGTGGAGTGCTGTGTCAGGTTGCTTCATGTCCGGAATGGCAACTGCAAGTACCATCTTGGTGAAGAGACTGTCAAGTTGGCCCAGCTGTACATGGACAAACTGGCCAAACATGGTCATCAGGCCAACAAAGCTGCACTCTATGGAGAGCTGTGTGCTCTGCTCTTTGCTAAGAGCCTTTATGATGAGGCCTACAGGTGGTGCATAGAGGCAATGAAAGAGATCACAGTGGGTTTGCCTGTTAAGGTTGTGGTAGATGTCCTAAGACAGGCTTCCAAGGCCTGTGTAGTAAAGAGGGAGTTCAGGAAGGCAGAGCATCTGATAAAGCATGCTGTTTTCCTGGCACGTGAGCATTTTGGACACAAGCATCCCAAGTATTCAGACACTCTCCTTGATTATGGTTTTTATTTGCTGAATGTGGATAACATCTGCCAATCAGTTGCAATATACCAGACGGCTCTAGATATCCGGCAGTCGGTTTTCGGGGGAAAGAATATCCATGTGGCCACAGCACACGAGGACCTTGCATACTCCTCCTATGTGCATCTGTACAGCTCTGGCAAATTTGACAATGCACTATTCCATGCAGAGCGGGCCATAGACATTATCACTCACATTCTCCCTGAGGATCATCTGCTGCTGGCCTCCTCCAAAAGAGTCAAAGCTCTGATCCTGGAGGAGATTGCCATTGACTGCCACAataaggagacagaggagaggctgcTCCAGGATGCCCatgacctccacctctcctctctccagctggCCAAGAAAGCCTTTGGGGAGTTCAATGTTCAGACAGCAAAGCACTATGGCAACCTGGGCCGCCTCTACCAGTCCATGAGGAAGTTCAAGGAGGCAGAGGAGATGCACATCAAAGCCATCCAGATCAAGGAGCAGCTTCTGGGTCAGGAGGACTATGAGGTGGCTCTGTCTGTGGGCCACCTAGCCTCTCTCTACAACTACGACATGAACCAGTATGAAGATGCAGAGAGGCTTTACCTGCGCTCCATTGCTATCGGTAAGAAGCTGTTTGGCGAGGGCTACAGTGGACTGGAATACGACTACAGGGGCCTAATTAAACTTTACAACTCTGTGGGGAACTATGAGAAAGTCTTTGAGTACCACAATATTTTATCCAGTTGGAACCGGCTGAGGGACCGGCAGTTTGCTGTGGCTGATGCCTTAGAGGACGTAAACACCAGCCCCCAGGCCACCGGGGAGGTGGTGCAGTCCTTCCTACTGTCACAGAACAATGGGGCTGGCCCACCTGCTTAGGctcaccacacagacacacacatgcccacATACTGATAGAAACGCTAAAGGTGTTCACGGCTCACTTACATTTGTTGAACACACCCTCTCCACATCAAGCTACATGGTTGGCCTTGCAATGGGACACCTGGCTATGGGAAAAATCACTATCGCCTGTGGAATGCATATAATCTAGTGTTTTTGTCCTCACTTTTGCGCCCAACGGGGGCATTCTCCTGTGATCAACCCATTATTGAACATTTGATGGAAGGAACCTCTTGCCATCCACTTTGCATCACCTAACATCGCTTTCATCACCTTCAGTCTTCTGTAAGAGGAATTGAGAAAAGGGTGAAAAATAAAACAACGACATCAGTGTGTTCTAGCTCTAGAATAGGAATTGGTTTGTTTTTGGCTTCATTTTTGGTCAGCGCTTGCCCTTTGTTGACCATTGGGATGTCCCCTACAAGCATGGATGGAGCACCTTTTTACTTTGGCCAATTATAAAGAGCAAGTTACTTTTTTCTGGGTGGAATCCTTATTTTATTGTTCCAATGTCATGAGGGAGTTTACAAAATAGTTTTCATTCATGGACCAAATCTTCAGTTTCCTTTTTGTAACACCTGTTTTTGTCTCCATCTAAAGACGTTGGCGCAGTCTTTATGCTTGTGCTTAAAGGTTGTCCGTGATTTGATGAATTTGAAATGCACCAGTGTGTGTATTAAATTTGACCACAATTGTGCTCAGtagatttgttgttgttgcactTACGTGTAGTTTATTTGAAAGTGTACGTGGGTACTTTATAAAGAATTTCATATAGCTAAACCAAAAACAGGTGAGCTTAAACCTGCTATTCAGATGACTCCCTCCCTGTGTTCCAGTGCAAACGCCCAGACGGAGGTCCTCTAACATCGTCCCCAGGCTATTGTGCATATAAGCCTGGTACATTGATTCAAAGTTGGCCTTAGTGGGGGTGACCGTACTGAGTAAAGTATTTGTCATTTAATTTTAGCGAATCACACAACTGCGAGGCATGGCTCTGTGCTTGTGGTATGCAAGCGTACGGGGGAGGGTTAGGGGGAAGGTTGTGGGAGATGATTGGTTGGTAGATTAAGCCTATGCTTCAGGAGTTTCTCCCGGGCATTCTGTACTGGCTAACGAAGGTCAAGTTTGACCCGTTGGACTACCGGACTCTTCGGGCATTTGGGCTGAAGTGTCTGGGAATGAGATTAGGGGTCCTCAAGCACACCATTAGCAATAGAATAGGCCTTGTGTTTTCATTTTAGAAACCATTTGCCTAGTGAAGGATTACCTATTCCAAAGTAATGTAGTAAGTACCCCATTGTGTGTGAACTAGGTCAATGGAAATTATTGCCTTGTTTTTGAACAAATGCATGTCTGTCTAATGGATGTTAATGTTACATGTGCTGTTATGTTTCAACTGAAGTCCAAGCCTTCGCCTTAAAGGACGATCAGCCAAA

Function

NR:

description
amyloid protein-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937246.1 False 3091 mRNA 0.47 12 24095480 24119072
XM_021623122.2 True 3461 mRNA 0.47 13 24095480 24122061

Neighbor

gene id symbol gene type direction distance location
LOC110537234 LOC106568091 coding downstream 5386 24062473 ~ 24090094 (-)
LOC110537233 LOC106568122 coding downstream 37017 24049874 ~ 24058463 (-)
LOC110537232 LOC106568092 coding downstream 49116 24025374 ~ 24046364 (-)
LOC110537230 LOC106568094 coding downstream 143736 23719098 ~ 23951744 (-)
LOC110536822 LOC106568111 coding downstream 635153 23457583 ~ 23460327 (-)
LOC118936414 NA coding upstream 478248 24600309 ~ 24607820 (-)
LOC110537239 aatf coding upstream 486185 24608246 ~ 24617116 (-)
LOC110537240 lhx1 coding upstream 495122 24617118 ~ 24623412 (-)
mrm1 mrm1 coding upstream 598323 24720384 ~ 24725396 (-)
LOC110536825 LOC106603276 coding upstream 605938 24727999 ~ 24730374 (-)
G1051475 NA non-coding downstream 11921 24078410 ~ 24083559 (-)
G1051459 NA non-coding downstream 25199 24037075 ~ 24070281 (-)
G1051416 NA non-coding downstream 71160 24023093 ~ 24024320 (-)
G1051342 NA non-coding downstream 230317 23864030 ~ 23865163 (-)
G1051317 NA non-coding downstream 258148 23814084 ~ 23837332 (-)
G1051571 NA non-coding upstream 84499 24206560 ~ 24206833 (-)
G1051622 NA non-coding upstream 116611 24238672 ~ 24238971 (-)
G1051646 NA non-coding upstream 134238 24256299 ~ 24256498 (-)
G1051652 NA non-coding upstream 138905 24260966 ~ 24261188 (-)
G1051654 NA non-coding upstream 139829 24261890 ~ 24262095 (-)
G1050429 NA other downstream 851210 23243637 ~ 23244270 (-)
G1049722 NA other downstream 1405883 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 1453881 22607858 ~ 22654480 (-)
LOC110537218 LOC106568105 other downstream 1548823 22540032 ~ 22546807 (-)
G1049389 NA other downstream 1754971 22337086 ~ 22340509 (-)
G1052040 acaca other upstream 432636 24554697 ~ 24555000 (-)
G1054211 NA other upstream 1501818 25623879 ~ 25624637 (-)
G1054232 NA other upstream 1535208 25657269 ~ 25659005 (-)
G1055010 NA other upstream 2858722 26980783 ~ 26982355 (-)

Expression


Co-expression Network