XLOC_002916 (prr11)


Basic Information

Item Value
gene id XLOC_002916
gene name prr11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35250205 ~ 35257561 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005398
CGCCCTTTTTTACGATAGCCCTACTCCAATTGGAGGAAAGCAATAAGGAACTATATTCAAAATCAGGCATACAGCTGTCGGCATATGGGTGGATACAGGgGCCTCGGCTGTGCCTATCAGCGGCGAAGAAAGAGAAATGGCAGCAGTCGACGCTGGGCCTTAAAGAGTAAGATGGCACCAACGGCCCCTGATCCAGACAGCAAAACAAAGGTGGTCGGTATGGGGGAAATGAGCATTCAAACCACTAAACGGTCTTCACCACTAAGTATTACAGCTCTGTTGTCTGCATTCAGAAGTGTTGTGCAAAAATGCAGGAGGACAATTTAccaaACTTGTAGAGGATTCTTTAATGTCTTCCTCTTCTGGAGAGGCTATGCAGAAAGAGTGGAGTCCCTTCACCAAAAAGTAGATGAGCTTCAGAGGGAATTGGCTCTATTGCATTCAACCTTGAAGCTGTCTCAAGAAGCCAAGACTTCAGATGGTCAGTGGGAAATGCCTGATGGTGTTCGTCCACTTGTCTcccctccacctcctcctcctcctcctccaccaccacctcctcttcctcctccacaAATTTTAGTCACCCTTCCTCCAAAAGTGGCCTCGTTTTCCAAGAAAACTGCACAAGCTAACTCTCTGAAGGAGAAGCAAAATGGCCCCGTTGCAGTGACTCTTCGAGATCTTCAAGCTGTACAACTACGAAAAGTGACTGTAAGCCAAAAAACTCTGATGTCTCCAGAGAAAAGACGATCACCGTTGGTCACACTTGCAGATTTGCAGAAAGTTAAATTGCGACGCTCCAATTCTGACCTTCCCTTAAAGCTTAGGTCAAGCCTGAGGACACCAACCAAAAACGGCATGAGTCTTCGGGTACCACTAAGAAAAGTGAACTTAACCAGAAGTCCTGGTGGCACACCACGGTGTAACAAAGAGAACAATGTGACTGATTCAAGCCTGGATCCAAGCATGACCAAAGGGTTGGGAAACAAGTACCTGAATTCTCTGACAAAAGGACTGTCACCATTCAAGTGTGCCTAAAGAAAAAATGAACTATATTGTTACTGCACATTGTGCTCGCATGGTTAGTATTGTCTTGTTTTTGAGTGTTTTTACATGTTTACTGTGACCTGCTAATAGCTTCCATTGGTTCTCATACTGTCATGttgctatagtatttttttttttagtgacaGGACGGTATTTTGTTACTTGCTGCtgctgtttttgtcttattgCATGTGAAATGtgctacttttttcttttttttaatctgaatttTTAAGCCGTGCTTACAAGCGTAAAGAAAATGCACTGTATAAATACTGAATGTACAAAAGCATGAGCATATGCATGGTTCTCTGTATAATTATGCAGTTTATTGTCACTGTTACCTAAAATGATCCTGGATTTGTGAACCGAACCCACTGTACAATATAGTACATGATGCTTTGTGTTGAGACAAGATCCAAAAACCCAGTACTGTTGGTGCTTTATGtcttgatgttttattttaagggTCTTATGCAATATCTCTCTAAAGCCACAATTATTTGTATGCAAAAGTATTGCAGTAATGGAAAACGTTTAATAAATATTGGACCTATACATATTGTGTGTGCATCTTTTTGGGTTACAAATGAGTggatttaggcaaggcaagtttatttatatagtaagtTTCATACAccatggtaattcaaagtgctttacataaaccagaataaatgtgtaatatggaataaaatgattaaaaacagattaaaatgtgctaaaacgggttataaaagaatttaaaaaaagtaaaaacaatagtgtgat
>TCONS_00005399
GTTGTCATTGTTAATTACCTAAATCGATGTTTATAAAAGATGAAGCGTTAAACggtgtgtaatttgttttaaggGCCTCGGCTGTGCCTATCAGCGGCGAAGAAAGAGAAATGGCAGCAGTCGACGCTGGGCCTTAAAGAGTAAGATGGCACCAACGGCCCCTGATCCAGACAGCAAAACAAAGGTGGTCGGTATGGGGGAAATGAGCATTCAAACCACTAAACGGTCTTCACCACTAAGTATTACAGCTCTGTTGTCTGCATTCAGAAGTGTTGTGCAAAAATGCAGGAGGACAATTTAccaaACTTGTAGAGGATTCTTTAATGTCTTCCTCTTCTGGAGAGGCTATGCAGAAAGAGTGGAGTCCCTTCACCAAAAAGTAGATGAGCTTCAGAGGGAATTGGCTCTATTGCATTCAACCTTGAAGCTGTCTCAAGAAGCCAAGACTTCAGATGGTCAGTGGGAAATGCCTGATGGTGTTCGTCCACTTGTCTcccctccacctcctcctcctcctcctccaccaccacctcctcttcctcctccacaAATTTTAGTCACCCTTCCTCCAAAAGTGGCCTCGTTTTCCAAGAAAACTGCACAAGCTAACTCTCTGAAGGAGAAGCAAAATGGCCCCGTTGCAGTGACTCTTCGAGATCTTCAAGCTGTACAACTACGAAAAGTGACTGTAAGCCAAAAAACTCTGATGTCTCCAGAGAAAAGACGATCACCGTTGGTCACACTTGCAGATTTGCAGAAAGTTAAATTGCGACGCTCCAATTCTGACCTTCCCTTAAAGCTTAGGTCAAGCCTGAGGACACCAACCAAAAACGGCATGAGTCTTCGGGTACCACTAAGAAAAGTGAACTTAACCAGAAGTCCTGGTGGCACACCACGGTGTAACAAAGAGAACAATGTGACTGATTCAAGCCTGGATCCAAGCATGACCAAAGGGTTGGGAAACAAGTACCTGAATTCTCTGACAAAAGGACTGTCACCATTCAAGTGTGCCTAAAGAAAAAATGAACTATATTGTTACTGCACATTGTGCTCGCATGGTTAGTATTGTCTTGTTTTTGAGTGTTTTTACATGTTTACTGTGACCTGCTAATAGCTTCCATTGGTTCTCATACTGTCATGttgctatagtatttttttttttagtgacaGGACGGTATTTTGTTACTTGCTGCtgctgtttttgtcttattgCATGTGAAATGtgctacttttttcttttttttaatctgaatttTTAAGCCGTGCTTACAAGCGTAAAGAAAATGCACTGTATAAATACTGAATGTACAAAAGCATGAGCATATGCATGGTTCTCTGTATAATTATGCAGTTTATTGTCACTGTTACCTAAAATGATCCTGGATTTGTGAACCGAACCCACTGTACAATATAGTACATGATGCTTTGTGTTGAGACAAGATCCAAAAACCCAGTACTGTTGGTGCTTTATGtcttgatgttttattttaagggTCTTATGCAATATCTCTCTAAAGCCACAATTATTTGTATGCAAAAGTATTGCAGTAATGGAAAACGTTTAATAAATATTGGACCTATA
>TCONS_00005400
AGCAATAAGGAACTATATTCAAAATCAGGCATACAGCTGTCGGCATATGGGTGGATACAGGgGCCTCGGCTGTGCCTATCAGCGGCGAAGAAAGAGAAATGGCAGCAGTCGACGCTGGGCCTTAAAGAGTAAGATGGCACCAACGGCCCCTGATCCAGACAGCAAAACAAAGGTGGTCGGTATGGGGGAAATGAGCATTCAAACCACTAAACGGTCTTCACCACTAAGTATTACAGCTCTGTTGTCTGCATTCAGAAGTGTTGTGCAAAAATGCAGGAGGACAATTTAccaaACTTGTAGAGGATTCTTTAATGTCTTCCTCTTCTGGAGAGGCTATGCAGAAAGAGTGGAGTCCCTTCACCAAAAAGTAGATGAGCTTCAGAGGGAATTGGCTCTATTGCATTCAACCTTGAAGCTGTCTCAAGAAGCCAAGACTTCAGATGGTCAGTGGGAAATGCCTGATGGTGTTCGTCCACTTGTCTcccctccacctcctcctcctcctcctccaccacca

Function

symbol description
prr11 Predicted to be active in cytoplasm and nucleus. Orthologous to human PRR11 (proline rich 11).

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-97 Predicted to be active in cytoplasm and nucleus. Orthologous to human PRR11 (proline rich 11).

Ensembl:

ensembl_id ENSDARG00000087393

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005398 False 1821 mRNA 0.40 9 35250205 35257561
TCONS_00005399 False 1582 mRNA 0.41 8 35250418 35257458
TCONS_00005400 True 517 mRNA 0.48 5 35255881 35257523

Neighbor

gene id symbol gene type direction distance location
XLOC_002915 smg8 coding downstream 1703 35238488 ~ 35248502 (-)
XLOC_002914 ypel2a coding downstream 13256 35201850 ~ 35236949 (-)
XLOC_002913 pom121 coding downstream 63895 35169644 ~ 35186310 (-)
XLOC_002912 BX465844.1 coding downstream 85914 35160010 ~ 35164291 (-)
XLOC_002911 ripk4 coding downstream 96817 35114153 ~ 35153388 (-)
XLOC_002917 NA coding upstream 55331 35312892 ~ 35321637 (-)
XLOC_002918 gabrr3a coding upstream 110161 35367722 ~ 35410518 (-)
XLOC_002919 NA coding upstream 171943 35429504 ~ 35431655 (-)
XLOC_002920 si:ch211-244c8.4 coding upstream 280413 35537974 ~ 35542071 (-)
XLOC_002921 smg6 coding upstream 327086 35584647 ~ 35613752 (-)
XLOC_002909 NA non-coding downstream 191761 35054281 ~ 35058444 (-)
XLOC_002906 CT573139.2 non-coding downstream 291027 34951060 ~ 34959178 (-)
XLOC_002902 BX510654.1 non-coding downstream 922811 34327262 ~ 34327394 (-)
XLOC_002900 NA non-coding downstream 1051639 34196782 ~ 34198566 (-)
XLOC_002922 BX663516.3 non-coding upstream 362772 35620333 ~ 35620449 (-)
XLOC_002923 NA non-coding upstream 393023 35650584 ~ 35654680 (-)
XLOC_002925 NA non-coding upstream 554191 35811752 ~ 36093533 (-)

Expression


Co-expression Network