Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110537240 |
| gene name | lhx1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 24617118 ~ 24623412 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lhx1 | Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including animal organ development; gastrulation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including animal organ development; mesendoderm development; and somite rostral/caudal axis specification. Predicted to be part of chromatin and protein-containing complex. Predicted to be active in nucleus. |
| id | name | namespace |
|---|---|---|
| GO:0001705 | ectoderm formation | biological_process |
| GO:0001706 | endoderm formation | biological_process |
| GO:0021527 | spinal cord association neuron differentiation | biological_process |
| GO:0072077 | renal vesicle morphogenesis | biological_process |
| GO:0090009 | primitive streak formation | biological_process |
| GO:0006366 | transcription by RNA polymerase II | biological_process |
| GO:2000744 | positive regulation of anterior head development | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0021871 | forebrain regionalization | biological_process |
| GO:0061205 | paramesonephric duct development | biological_process |
| GO:2000768 | positive regulation of nephron tubule epithelial cell differentiation | biological_process |
| GO:0072178 | nephric duct morphogenesis | biological_process |
| GO:2000543 | positive regulation of gastrulation | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0021937 | cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0097477 | lateral motor column neuron migration | biological_process |
| GO:0040019 | positive regulation of embryonic development | biological_process |
| GO:0021702 | cerebellar Purkinje cell differentiation | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:0090190 | positive regulation of branching involved in ureteric bud morphogenesis | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0072049 | comma-shaped body morphogenesis | biological_process |
| GO:0072050 | S-shaped body morphogenesis | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0009791 | post-embryonic development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0003714 | transcription corepressor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021623130.2 | False | 3529 | mRNA | 0.41 | 5 | 24617183 | 24623412 |
| XM_036937252.1 | False | 3558 | mRNA | 0.41 | 5 | 24617186 | 24623411 |
| TU1198804 | True | 203 | lncRNA | 0.33 | 1 | 24617118 | 24617320 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537239 | aatf | coding | downstream | 67 | 24608246 ~ 24617116 (-) |
| LOC118936414 | NA | coding | downstream | 9631 | 24600309 ~ 24607820 (-) |
| LOC110537235 | LOC106568090 | coding | downstream | 495122 | 24095480 ~ 24122061 (-) |
| LOC110537234 | LOC106568091 | coding | downstream | 527089 | 24062473 ~ 24090094 (-) |
| LOC110537233 | LOC106568122 | coding | downstream | 558720 | 24049874 ~ 24058463 (-) |
| mrm1 | mrm1 | coding | upstream | 96972 | 24720384 ~ 24725396 (-) |
| LOC110536825 | LOC106603276 | coding | upstream | 104587 | 24727999 ~ 24730374 (-) |
| LOC100301685 | rdh12 | coding | upstream | 111499 | 24734911 ~ 24737099 (-) |
| LOC110537242 | LOC106568081 | coding | upstream | 114460 | 24737872 ~ 24746999 (-) |
| LOC110537244 | LOC106568079 | coding | upstream | 128194 | 24751606 ~ 24978957 (-) |
| G1052080 | NA | non-coding | downstream | 19055 | 24597867 ~ 24598128 (-) |
| G1052073 | NA | non-coding | downstream | 24411 | 24589930 ~ 24592772 (-) |
| G1052054 | NA | non-coding | downstream | 46163 | 24570804 ~ 24571020 (-) |
| G1052113 | NA | non-coding | upstream | 7325 | 24630737 ~ 24633618 (-) |
| G1052118 | NA | non-coding | upstream | 12365 | 24635777 ~ 24636076 (-) |
| G1053682 | NA | non-coding | upstream | 225600 | 24849012 ~ 24851195 (-) |
| G1053709 | NA | non-coding | upstream | 271498 | 24894910 ~ 24895331 (-) |
| G1053733 | NA | non-coding | upstream | 301162 | 24924574 ~ 24947891 (-) |
| G1052040 | acaca | other | downstream | 62183 | 24554697 ~ 24555000 (-) |
| G1050429 | NA | other | downstream | 1372913 | 23243637 ~ 23244270 (-) |
| G1049722 | NA | other | downstream | 1927586 | 22689161 ~ 22689597 (-) |
| LOC110536820 | LOC106603249 | other | downstream | 1975584 | 22607858 ~ 22654480 (-) |
| G1054211 | NA | other | upstream | 1000467 | 25623879 ~ 25624637 (-) |
| G1054232 | NA | other | upstream | 1033857 | 25657269 ~ 25659005 (-) |
| G1055010 | NA | other | upstream | 2357371 | 26980783 ~ 26982355 (-) |
| G1055199 | NA | other | upstream | 2521798 | 27145210 ~ 27145493 (-) |
| G1056225 | NA | other | upstream | 3354614 | 27978026 ~ 27978436 (-) |
