mrm1 (mrm1)


Basic Information

Item Value
gene id mrm1
gene name mrm1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 24720384 ~ 24725396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623131.2
AAAATATATAGTTTACTTCCTGGAGGAGGCGGAGTCTTGAAGTCACGCTGGGTAGCACTTGGAGTAATTTAGATGTTGAATGATATTGGTCTGGATTTTTAGAAAAGCATAAACTGAAAATAATTAGCGTAATATGTAGTTTTAATTCAGGCAATATTATATGTTAAAGTTTTGTTTTTACGACGTGGTGTCCAGTTTGCATACGTTTTAACAAGTTTACTAAGTTAGCTACGTTAGCTAGCCTGCCATGCTTTGCCGAAGGACCTCTGCGTGACTGATGCTGGTAGGCGCTCGTTTATTTAATTGCCATAATCCAGTTTTCTCAAAGTTGACCATCCAGTCACAGTAACTGTAGAGCCATTTTATGTATTTTCATTTTAAGAACATGGGGACTTGGAATTTGGCTTGTCGGTGTTCCAGGATGTTCGTCAACAGTAGACTGTTGAATTTGGTATCAGAGTCAGACATGAGAGTGGGTTGTCACTTTGCATCCTACCATTGCGCTAGTGCTCTCCTCTGGCCTAAGGACAGCAGAGTCAAAACAGCTGAGGGGTGGCGAAGCAGTGCTATAACCAGCTCTGGAATGCGACACAGGCCTGCTGTGTCTGAAGTAGGAAAGTACAAATCCGAAGGTCAGTCTGAAGACATAAAGGATGACCCAGAGACTCCAGCCTCCAGAAATGTCTGGAGGAAAGAGACCTCAGTATCCCGGGAGAGGAAGCCCAATACAGACAATAGAGTATCATTTGAGTTCCAGAGAGGTGCCCCAATCAAACGGGAGAGGAAAACAAATACAGACAGCAAAATGTCATCTGAGCTCCGGAAGCTCAGCCTGGATGACTTTCCAGAGGAGTGTGAGAGGCTAGTAAAGGACTCCAGAGAAAGACTGTCCAAAGAAGAACACAGTAATTATGAGACgttgtttggtgtgtctccctgtctcctggCTCTCACCCAGGGCAGAAGGAATGCACACAGGTTGTTTGTGAAGGAGGGTGAGGCCTCTCGTAGGGCCTCCGTACGACAGGTGTGTGAGGAGGCCCATAAGCAGGGTGTGCCAATCCAGAGGGTTAGTAAGAATGACCTGAACAAGATGTGCTCAGGAGGGGTTCACCAGGGCTTATGCCTACAGGCCAGTTTTTTGGGTTTCCTCACTGAGGACAAGACCTCCAAGCCCCCCAGGGACAGCAGTCACATCCCCCTCTGGCTAGTCCTAGATAGAGTGCAGGACCCAATGAACCTTGGTGCCATCCTGCGTTCTGCATATTTTCTTGGGGTGGACGGAGTTGCTAGCAGTCTTCGTAACAGCTGTCCGTTGACACCAGTTGTGAGTAAGGCCAGCTCGGGTGTAATGGAGGTCATGAGAGTGTATGGCTATGATAGCCTCGTAGATATGGTGAAGGTGAAAGTGGCACAAGGCTGGCAGGTTATTGGCACAGTAGGAGCTGAAGCAGAGAACTCCCATGTTCCTGTCATGAAATGTTCCAAATTCCAGATGACCAAACCTACGCTTCTGCTGATGGGTGGTGAAGGGGAAGGTTTGTCCCGGGAGCTGCGTCTGCATTGTGAGGTCATGCTCACCATCCCATCCCGCAGAGATCTACACCCTGGGGTCGAGTCCCTCAATGTCTCTGTGGCTACAGGCATCCTGCTGCACTCTCTGTTGTCGTCCCATAGAGGTGGCCATTGATGCCCGACTAAACTACACAACTCAATGTGTTTACTTTGGAGGCCCTCGCTGGGCTTAATGACTGGATTTACTTAATCAATTAGCATTCAGGATGTCTGAGAGGCCTGGATGGCTGAGTGATTGTGCTGGGGCAGCTGATGTGCcctggccgtgctgctctgcactGCTTTGGACCTTCATGCTAGCTACTTTTCTGAATGGTAACATAGTATGAagtaatgaaaataaataaaaccttGTCTACTCAAAGTTATTGCATTCTTTGCAACTTTCTAATGTTAGCCGCTTGGGTTTTTATGACTTTTGCACATGTGAATGTTGAATccataaaaatacaaatgtttatGAGAATGTGGTCCCTGACGAAAGAGCTACTGTTGTGCTGTTAGAATGGGTCAGTGGCTTCGGTTCAGCTAAATTGATTGCAAATGCTGGTTTTGAATAGAAAGGGAGGGGGGAATGGCCACAGGCTCTGGGCTATTGCTTCTGGTCAGGGGCTGTTTAAAATTGATCATGGGAACAAGCGGCTGCTATTGATAGGCAACATTTGCCCTTTTATCACTGTCAGAATTTAACCAGGGGGCTCATTTATAATTAATGTGCACACATGAatttgtgtgtgtatagttgAAACGTTATCACAAATCTTCAGGATTTATCAGAAGTTTAATTGTTAGGACTTGTTCTTTATTGAGCATATATTTAACAATTGCCTCAGATCATGCTTATGAGTTAGATTTACATATCTGTTTTTGTTACAATCCGAAACTATAATTTCAAGGATTGCATGCTTACATCCATTGAAATATGTTTTTGTGGGAATGTAATTATCTCTACAGTGTAAATACTCTCCTACAACTCTGAACAGTGCAGTGGTAGCTGATGACTCTTTCTATATAATTCATGAATAGCTTTATTATAAGCAGACCCATTTGTTATTTCCCAGTGTGCTGCAGTGTTTGGCCATACAGCCAGAGATGAGGAGGGGCTGTGAATTGGCCTGAGGTACTTGGTTATTTATACAAAAATGTAAActtaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaaca
>XM_021623132.2
AAAATATATAGTTTACTTCCTGGAGGAGGCGGAGTCTTGAAGTCACGCTGGGTAGCACTTGGAGTAATTTAGATGTTGAATGATATTGGTCTGGATTTTTAGAAAAGCATAAACTGAAAATAATTAGCGTAATATGTAGTTTTAATTCAGGCAATATTATATGTTAAAGTTTTGTTTTTACGACGTGGTGTCCAGTTTGCATACGTTTTAACAAGTTTACTAAGTTAGCTACGTTAGCTAGCCTGCCATGCTTTGCCGAAGGACCTCTGCGTGACTGATGCTGAACATGGGGACTTGGAATTTGGCTTGTCGGTGTTCCAGGATGTTCGTCAACAGTAGACTGTTGAATTTGGTATCAGAGTCAGACATGAGAGTGGGTTGTCACTTTGCATCCTACCATTGCGCTAGTGCTCTCCTCTGGCCTAAGGACAGCAGAGTCAAAACAGCTGAGGGGTGGCGAAGCAGTGCTATAACCAGCTCTGGAATGCGACACAGGCCTGCTGTGTCTGAAGTAGGAAAGTACAAATCCGAAGGTCAGTCTGAAGACATAAAGGATGACCCAGAGACTCCAGCCTCCAGAAATGTCTGGAGGAAAGAGACCTCAGTATCCCGGGAGAGGAAGCCCAATACAGACAATAGAGTATCATTTGAGTTCCAGAGAGGTGCCCCAATCAAACGGGAGAGGAAAACAAATACAGACAGCAAAATGTCATCTGAGCTCCGGAAGCTCAGCCTGGATGACTTTCCAGAGGAGTGTGAGAGGCTAGTAAAGGACTCCAGAGAAAGACTGTCCAAAGAAGAACACAGTAATTATGAGACgttgtttggtgtgtctccctgtctcctggCTCTCACCCAGGGCAGAAGGAATGCACACAGGTTGTTTGTGAAGGAGGGTGAGGCCTCTCGTAGGGCCTCCGTACGACAGGTGTGTGAGGAGGCCCATAAGCAGGGTGTGCCAATCCAGAGGGTTAGTAAGAATGACCTGAACAAGATGTGCTCAGGAGGGGTTCACCAGGGCTTATGCCTACAGGCCAGTTTTTTGGGTTTCCTCACTGAGGACAAGACCTCCAAGCCCCCCAGGGACAGCAGTCACATCCCCCTCTGGCTAGTCCTAGATAGAGTGCAGGACCCAATGAACCTTGGTGCCATCCTGCGTTCTGCATATTTTCTTGGGGTGGACGGAGTTGCTAGCAGTCTTCGTAACAGCTGTCCGTTGACACCAGTTGTGAGTAAGGCCAGCTCGGGTGTAATGGAGGTCATGAGAGTGTATGGCTATGATAGCCTCGTAGATATGGTGAAGGTGAAAGTGGCACAAGGCTGGCAGGTTATTGGCACAGTAGGAGCTGAAGCAGAGAACTCCCATGTTCCTGTCATGAAATGTTCCAAATTCCAGATGACCAAACCTACGCTTCTGCTGATGGGTGGTGAAGGGGAAGGTTTGTCCCGGGAGCTGCGTCTGCATTGTGAGGTCATGCTCACCATCCCATCCCGCAGAGATCTACACCCTGGGGTCGAGTCCCTCAATGTCTCTGTGGCTACAGGCATCCTGCTGCACTCTCTGTTGTCGTCCCATAGAGGTGGCCATTGATGCCCGACTAAACTACACAACTCAATGTGTTTACTTTGGAGGCCCTCGCTGGGCTTAATGACTGGATTTACTTAATCAATTAGCATTCAGGATGTCTGAGAGGCCTGGATGGCTGAGTGATTGTGCTGGGGCAGCTGATGTGCcctggccgtgctgctctgcactGCTTTGGACCTTCATGCTAGCTACTTTTCTGAATGGTAACATAGTATGAagtaatgaaaataaataaaaccttGTCTACTCAAAGTTATTGCATTCTTTGCAACTTTCTAATGTTAGCCGCTTGGGTTTTTATGACTTTTGCACATGTGAATGTTGAATccataaaaatacaaatgtttatGAGAATGTGGTCCCTGACGAAAGAGCTACTGTTGTGCTGTTAGAATGGGTCAGTGGCTTCGGTTCAGCTAAATTGATTGCAAATGCTGGTTTTGAATAGAAAGGGAGGGGGGAATGGCCACAGGCTCTGGGCTATTGCTTCTGGTCAGGGGCTGTTTAAAATTGATCATGGGAACAAGCGGCTGCTATTGATAGGCAACATTTGCCCTTTTATCACTGTCAGAATTTAACCAGGGGGCTCATTTATAATTAATGTGCACACATGAatttgtgtgtgtatagttgAAACGTTATCACAAATCTTCAGGATTTATCAGAAGTTTAATTGTTAGGACTTGTTCTTTATTGAGCATATATTTAACAATTGCCTCAGATCATGCTTATGAGTTAGATTTACATATCTGTTTTTGTTACAATCCGAAACTATAATTTCAAGGATTGCATGCTTACATCCATTGAAATATGTTTTTGTGGGAATGTAATTATCTCTACAGTGTAAATACTCTCCTACAACTCTGAACAGTGCAGTGGTAGCTGATGACTCTTTCTATATAATTCATGAATAGCTTTATTATAAGCAGACCCATTTGTTATTTCCCAGTGTGCTGCAGTGTTTGGCCATACAGCCAGAGATGAGGAGGGGCTGTGAATTGGCCTGAGGTACTTGGTTATTTATACAAAAATGTAAActtaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaaca

Function

symbol description
mrm1 Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing. Predicted to be active in mitochondrion. Orthologous to human MRM1 (mitochondrial rRNA methyltransferase 1).

NR:

description
rRNA methyltransferase 1, mitochondrial isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K15507 MRM1, PET56; 21S rRNA (GM2251-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623131.2 False 2784 mRNA 0.45 5 24720384 24725396
XM_021623132.2 True 2685 mRNA 0.45 6 24720384 24725396
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537240 lhx1 coding downstream 96972 24617118 ~ 24623412 (-)
LOC110537239 aatf coding downstream 103268 24608246 ~ 24617116 (-)
LOC118936414 NA coding downstream 112832 24600309 ~ 24607820 (-)
LOC110537235 LOC106568090 coding downstream 598323 24095480 ~ 24122061 (-)
LOC110537234 LOC106568091 coding downstream 630290 24062473 ~ 24090094 (-)
LOC110536825 LOC106603276 coding upstream 2603 24727999 ~ 24730374 (-)
LOC100301685 rdh12 coding upstream 9515 24734911 ~ 24737099 (-)
LOC110537242 LOC106568081 coding upstream 12476 24737872 ~ 24746999 (-)
LOC110537244 LOC106568079 coding upstream 26210 24751606 ~ 24978957 (-)
LOC110537246 LOC106568078 coding upstream 311432 25036828 ~ 25142397 (-)
G1052118 NA non-coding downstream 84308 24635777 ~ 24636076 (-)
G1052113 NA non-coding downstream 86766 24630737 ~ 24633618 (-)
G1053682 NA non-coding upstream 123616 24849012 ~ 24851195 (-)
G1053709 NA non-coding upstream 169514 24894910 ~ 24895331 (-)
G1053733 NA non-coding upstream 199178 24924574 ~ 24947891 (-)
G1053815 NA non-coding upstream 314702 25040098 ~ 25040375 (-)
G1052040 acaca other downstream 165384 24554697 ~ 24555000 (-)
G1050429 NA other downstream 1476114 23243637 ~ 23244270 (-)
G1049722 NA other downstream 2030787 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 2078785 22607858 ~ 22654480 (-)
G1054211 NA other upstream 898483 25623879 ~ 25624637 (-)
G1054232 NA other upstream 931873 25657269 ~ 25659005 (-)
G1055010 NA other upstream 2255387 26980783 ~ 26982355 (-)
G1055199 NA other upstream 2419814 27145210 ~ 27145493 (-)
G1056225 NA other upstream 3252630 27978026 ~ 27978436 (-)

Expression

mrm1(mrm1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

mrm1(mrm1) Expression in each Bioproject

Bar chart with 21 bars.
mrm1(mrm1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network