LOC110537255


Basic Information

Item Value
gene id LOC110537255
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 25292020 ~ 25292876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475593.2
AGAAACACCGGCCACCCCCGTTGTGGTGAGTTGCCAATGCCTACAGTCAACTATAATGATGTCATTAGCCAGGTGCCATAAAATACCTCCTCCCAAACGGTTGGCTCTTCACAAATCATCACCACTGAAGCTGAGAAGGTTTACGTCATAATATCCGTTTGACCACAGAAAGAGAATGCATGTTCGTAGTGGTGTGCTGCAAATGGTTGTGATGGCCATTGTCTTCCTGGCTCAACATGGGACTGTGATCGGAGCCAACAGCACCAATTCCACGGGCAGCAGCCCCAActcctctccccaactctcctctctgtggGGGATTGGCCTCATGCTCCTGGCTCTGTCCCCCACTCTCCTGCAGCAGATAGCTACTCTCTGATGGCAGCAAGGCAGCTATATTCATCATGCACTCCCTCAATCTGGGATGTCCAACTATTCTTTAACTACATATATTCTCACCCTAAGGAAGACCACGATGACCTGTACTCCTTGGACACTTTCTAAAAAACCTTTTGTTATCTACTAAAATAAAATATAGCACACATGTTAAAACAACTATGTTTCTGAATAAATGCATCATGATAAAGTGAA
>TU1200862
CCAGGTGCCATAAAATACCTCCTCCCAAACGGTTGGCTCTTCACAAATCATCACCACTGAAGCTGAGAAGGTTTACGTCATAATATCCGTTTGACCACAGAAAGAGAATGCATGTTCGTAGTGGTGTGCTGCAAATGGTTGTGATGGCCATTGTCTTCCTGGCTCAACATGGGACTGTGATCGGAGCCAACAGCACCAATTCCACGGGCAGCAGCCCCAActcctctccccaactctccACTCTCCTGCAGCAGATAGCTACTCTCTGATGGCAGCAAGGCAGCTATATTCATCATGCACTCCCTCAATCTGGGATGTCCAACTATTCTTTAACTACATATATTCTCACCCTAAGGAAGACCACGATGACCTGTACTCCTTGGACACTTTCTAAAAAACCTTTTGTTATCTACTAAAATAAAATATAGCACACATGTTAAAACAACTATGTTTCTGAATAAATGCATCATGATAAAGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475593.2 False 591 mRNA 0.46 2 25292020 25292876
TU1200862 True 481 lncRNA 0.44 3 25292020 25292808

Neighbor

gene id symbol gene type direction distance location
LOC110536826 LOC106568076 coding downstream 140621 25147189 ~ 25151399 (-)
LOC110537246 LOC106568078 coding downstream 149623 25036828 ~ 25142397 (-)
LOC110537244 LOC106568079 coding downstream 313063 24751606 ~ 24978957 (-)
LOC110537242 LOC106568081 coding downstream 545021 24737872 ~ 24746999 (-)
LOC100301685 rdh12 coding downstream 554921 24734911 ~ 24737099 (-)
LOC110537253 LOC106567760 coding upstream 528 25293404 ~ 25296817 (-)
LOC110537254 LOC106567761 coding upstream 4653 25297529 ~ 25300040 (-)
LOC110537261 LOC106567765 coding upstream 498488 25791364 ~ 25797619 (-)
LOC110536828 LOC106568049 coding upstream 549216 25842092 ~ 25854283 (-)
aifm1 aifm1 coding upstream 561453 25854329 ~ 25872194 (-)
G1053947 NA non-coding downstream 41415 25250392 ~ 25250605 (-)
G1053939 lgals9 non-coding downstream 43264 25238839 ~ 25248756 (-)
G1053914 NA non-coding downstream 95966 25192807 ~ 25196054 (-)
G1053909 NA non-coding downstream 112781 25178830 ~ 25179239 (-)
G1053908 NA non-coding downstream 116030 25175578 ~ 25175990 (-)
G1053982 NA non-coding upstream 13978 25306854 ~ 25307112 (-)
G1053984 NA non-coding upstream 16133 25309009 ~ 25309789 (-)
G1053985 NA non-coding upstream 16920 25309796 ~ 25310244 (-)
G1053986 NA non-coding upstream 17884 25310760 ~ 25310959 (-)
G1053987 LOC108276969 non-coding upstream 18768 25311644 ~ 25311902 (-)
LOC118936414 NA other downstream 684200 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 737020 24554697 ~ 24555000 (-)
G1050429 NA other downstream 2047750 23243637 ~ 23244270 (-)
G1049722 NA other downstream 2602423 22689161 ~ 22689597 (-)
LOC110536820 LOC106603249 other downstream 2650421 22607858 ~ 22654480 (-)
G1054211 NA other upstream 331003 25623879 ~ 25624637 (-)
G1054232 NA other upstream 364393 25657269 ~ 25659005 (-)
G1055010 NA other upstream 1687907 26980783 ~ 26982355 (-)
G1055199 NA other upstream 1852334 27145210 ~ 27145493 (-)
G1056225 NA other upstream 2685150 27978026 ~ 27978436 (-)

Expression


Co-expression Network