Item | Value |
---|---|
gene id | LOC110537258 |
gene name | msi2h |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048576.1 |
NCBI id | CM023230.2 |
chromosome length | 102853256 |
location | 25352530 ~ 25719607 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036937266.1 | False | 6468 | mRNA | 0.39 | 14 | 25352530 | 25719607 |
XM_036937267.1 | False | 6536 | mRNA | 0.40 | 15 | 25352530 | 25719607 |
XM_036937268.1 | False | 6539 | mRNA | 0.40 | 15 | 25352530 | 25719607 |
XM_036937269.1 | False | 6465 | mRNA | 0.39 | 14 | 25352530 | 25719607 |
XM_036937270.1 | False | 6478 | mRNA | 0.39 | 15 | 25352530 | 25719607 |
XM_036937272.1 | False | 6509 | mRNA | 0.39 | 15 | 25352530 | 25719607 |
XM_036937273.1 | False | 6506 | mRNA | 0.39 | 15 | 25352530 | 25719607 |
XM_036937274.1 | False | 6411 | mRNA | 0.39 | 14 | 25352530 | 25719607 |
XM_036937275.1 | False | 6411 | mRNA | 0.39 | 14 | 25352530 | 25719607 |
XM_036937276.1 | False | 6354 | mRNA | 0.39 | 14 | 25352530 | 25719607 |
XM_036937277.1 | False | 6288 | mRNA | 0.39 | 13 | 25352530 | 25719607 |
XM_036937278.1 | False | 6359 | mRNA | 0.39 | 14 | 25352530 | 25719607 |
XM_036937279.1 | False | 6231 | mRNA | 0.39 | 13 | 25352530 | 25719607 |
XR_005034923.1 | False | 6580 | mRNA | 0.40 | 16 | 25352530 | 25719607 |
XR_005034924.1 | False | 6577 | mRNA | 0.40 | 16 | 25352530 | 25719607 |
XR_005034925.1 | False | 6523 | mRNA | 0.39 | 16 | 25352530 | 25719607 |
XR_005034926.1 | False | 6466 | mRNA | 0.39 | 16 | 25352530 | 25719607 |
XR_005034927.1 | False | 6400 | mRNA | 0.39 | 15 | 25352530 | 25719607 |
XR_005034928.1 | False | 6286 | mRNA | 0.38 | 15 | 25352530 | 25719607 |
TU1199300 | False | 592 | lncRNA | 0.41 | 5 | 25352584 | 25356008 |
TU1199305 | False | 523 | lncRNA | 0.42 | 5 | 25352584 | 25355939 |
TU1199317 | False | 2316 | TUCP | 0.39 | 5 | 25352584 | 25356008 |
TU1199330 | True | 2333 | lncRNA | 0.36 | 2 | 25717226 | 25719587 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110537256 | LOC106567763 | coding | upstream | 6126 | 25327761 ~ 25346404 (+) |
LOC110537252 | LOC106567758 | coding | upstream | 37163 | 25252359 ~ 25315367 (+) |
lgals9 | lgals9 | coding | upstream | 103916 | 25238748 ~ 25248614 (+) |
LOC110537250 | LOC106603285 | coding | upstream | 114431 | 25198956 ~ 25238099 (+) |
LOC110537249 | LOC106568074 | coding | upstream | 158905 | 25175567 ~ 25193625 (+) |
LOC110537260 | LOC106567764 | coding | downstream | 76741 | 25796348 ~ 25836166 (+) |
LOC110536827 | NA | coding | downstream | 116742 | 25836349 ~ 25837554 (+) |
LOC110536829 | NA | coding | downstream | 173158 | 25892765 ~ 25897580 (+) |
vma21 | LOC106567769 | coding | downstream | 177885 | 25897492 ~ 25899724 (+) |
npas2 | LOC106567770 | coding | downstream | 192457 | 25912064 ~ 25986551 (+) |
G1052571 | NA | non-coding | upstream | 5551 | 25346754 ~ 25346979 (+) |
G1052533 | NA | non-coding | upstream | 31991 | 25320423 ~ 25320539 (+) |
G1052529 | NA | non-coding | upstream | 32488 | 25316749 ~ 25320042 (+) |
G1052530 | NA | non-coding | upstream | 35965 | 25315509 ~ 25316565 (+) |
G1052864 | NA | non-coding | downstream | 67767 | 25787374 ~ 25790474 (+) |
G1052878 | NA | non-coding | downstream | 87036 | 25806643 ~ 25806858 (+) |
G1052904 | aifm1 | non-coding | downstream | 136805 | 25856412 ~ 25857136 (+) |
G1052911 | NA | non-coding | downstream | 157980 | 25877587 ~ 25878249 (+) |
G1052913 | NA | non-coding | downstream | 162330 | 25881937 ~ 25882406 (+) |
G1051534 | NA | other | upstream | 1174596 | 24177430 ~ 24177934 (+) |
G1049629 | LOC106456187 | other | upstream | 2614864 | 22728930 ~ 22737666 (+) |
G1049502 | NA | other | upstream | 2826298 | 22525941 ~ 22526232 (+) |
G1048417 | LOC106568221 | other | upstream | 3517718 | 21833094 ~ 21834812 (+) |
LOC110537158 | LOC106568186 | other | upstream | 4660788 | 20667957 ~ 20694090 (+) |
G1052922 | LOC106567769 | other | downstream | 177925 | 25897532 ~ 25899724 (+) |
G1052923 | NA | other | downstream | 182712 | 25902319 ~ 25905315 (+) |
G1055498 | LOC106568053 | other | downstream | 1841764 | 27561371 ~ 27562671 (+) |
hmgn7 | LOC106567806 | other | downstream | 1849747 | 27569334 ~ 27572548 (+) |
G1052617 | NA | non-coding | downstream | 48488 | 25404496 ~ 25405130 (+) |
G1052649 | NA | non-coding | downstream | 95554 | 25451562 ~ 25451929 (+) |
G1052806 | NA | non-coding | downstream | 321763 | 25677771 ~ 25678053 (+) |