LOC110537272 (LOC106567774)


Basic Information

Item Value
gene id LOC110537272
gene name LOC106567774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26099610 ~ 26106362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623191.2
ACTTAGACGCCACTCAGTCGTAAAGAAACATCACTTTAGCAGTGGGCCTTATAATTCTCAACAGAGAGTGAGTGTTCTCATCCTAGCTAACTGACACAGTGAAAGAGTGTGCTTACAGAGGTCCTATTGGTTACTTTTACAGGACACATTTACAGGACAAGAGCTGAAAACTCGTTGAAACCATTTGGAGACAAGAGTGCTTAACATTAGCAGTGTAGTATCATCACTATCAAAGGACATGGCCTTGTCGGGGACAGGAGTACCACAGTGTAGACTGTGATAGCGACCTAAGTGGAGACGCCACTACTGgatctgcaatttcactggagaTGAGCATTATGGGAAGGTTCCTGTTTCAAATCTCTCTGTAAGACTGAGCCTATGAGTGAGCCACTATGGCGGACTGGAACTTGTTGGGCAAGCTTCTGGAGAGTGCCCAGGAGCACTCCACTGTAGTGGGCAAGGTCTGGCTGACCGTGCTCTTCATCTTCAGGATCCTGGTGCTTGGAGCTGCAGCTGAGAAAGTGTGGGGTGATGAGCAGTCTGGCTTCACCTGTGACACCAAGCAGCCTGGTTGTCAGAATGTCTGCTATGACAAGACTTTCCCCATCTCTCATATCCGCTTCTGGGTGCTGCAGATCATCTTCGTGTCCACGCCCACTCTCATCTACCTGGGCCACATCCTGCACCTGGTGCGCATGGAGGAGAAACAGAAGCAGAAAGAGAAAGACTTGGCTGAGCAACTGGCCATCCACAATGACAAGCAGCAGCTGCTGCCTGACGCCAAACCCAAGAAGCCCCCCGTCCGGGACGACCTGGGCCGCGTCCGCCTGCAGGGGGTCCTGCTGCGCACATACGTCTTCAACATCATCTTCAAAACCCTGTTCGAGGTGGGATTTATCATAGCTCAGTACCTGCTCTATGGGTTTGAGCTGAAACCTCTGTACACCTGTAACCGCTCACCCTGTCCCAACGTGGTGAACTGCTACATCTCCAGGCCCACAGAGAAGACGATCTTCATCCTCTTCATGTTGGCAGTGGCATGCATATCTCTGGTGCTGAACATAGTGGAGATGTATCACCTGGGGTTCACCAAGTGCCGCCGGTACAGACACGTCCAGACCCCATGTGAGACAGGGTCCAAGGCCCCCAGCAAGGCAGTGGTGCCTTCTGTCCCAAACTATAACTACTTCCCTAGGCACCACCCAGCCCCTGAGCCCTACCATGCAGACCAGTACATCATGAATGAGCCTGACTCTGCCTACCACCCTTACAACAGCAAAGTGGCTTACAAGCAGAACAGAGACAACCTGGCCGTAGAGATGAACAGTAAACCAGAAGGGGGTGACACCACAGAAAGGAAAGGCTCCAGTTCTGCTCCAGAGTCGCCTTCAGAGAAACAACGGCGACCCAGTCGATCCAGCAAGCACAGCAATAGTAAGACCAGACTAGACGATCTGAAGATCTGAGGGACAGTTATGGCGCATTTCCACCACTGGGTTTTATAGAGGTGCTTGGCCTAAAGGTTCAAACTTTTGTGTTTCCACCtttgaggtgggggggggggaagtatTGGGCCATGGACCTACTGACTTGTGTCCAGAGTGGGACTTCTGGAGATGCATTAAAATAATGGTTAACAGTTAACGTAATAATTGAGCCATTTCCTTCTCAAAAGCAAATGAGTTTtcagaggttgttgattctgctctgCACAAGTCCTCATTGTAGCTTTGGAAACTATTTCCGTAGTATAATACCAGGGTGTATACACAAGCGTAACACCTCATCATAGTCAAAAAGTGTCACAGTCAAATTtgtacaatatacaatatacattgtaccAGAATAGACAATGTGCCTTTGATGGAAAGCATTGTATCAGGAGAGCAAGGTTAGGGAAGGAACAATATGGAAGATAAGATTATTTCCTCTTCAGACATTCTTGATCAGAATGGACCATATCTGTATTATCTaaaacaatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatcataggtacacttcaactatgacagacaa

Function

NR:

description
gap junction alpha-3 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623191.2 True 2098 mRNA 0.48 2 26099610 26106362

Neighbor

gene id symbol gene type direction distance location
trnav-uac-17 NA coding downstream 2956 26096579 ~ 26096654 (-)
zgc:113208 LOC106567768 coding downstream 209811 25885945 ~ 25889799 (-)
LOC110537265 LOC106567767 coding downstream 218174 25876456 ~ 25881436 (-)
aifm1 aifm1 coding downstream 227416 25854329 ~ 25872194 (-)
LOC110536828 LOC106568049 coding downstream 245327 25842092 ~ 25854283 (-)
LOC110537274 cxb1 coding upstream 3339 26109701 ~ 26113353 (-)
igbp1 LOC106567775 coding upstream 7174 26113536 ~ 26116579 (-)
wnt11f2 LOC106568050 coding upstream 29434 26135796 ~ 26138363 (-)
LOC110537277 LOC106567777 coding upstream 39615 26145977 ~ 26210191 (-)
fam155b LOC106567779 coding upstream 109557 26215919 ~ 26264356 (-)
G1054474 LOC106567773 non-coding downstream 13415 26085074 ~ 26086195 (-)
G1054466 LOC106567773 non-coding downstream 21101 26077471 ~ 26078509 (-)
G1054394 NA non-coding downstream 105457 25985418 ~ 25994153 (-)
G1054419 NA non-coding downstream 120782 25977868 ~ 25978828 (-)
G1054363 NA non-coding downstream 189730 25909631 ~ 25909880 (-)
G1054490 NA non-coding upstream 22722 26129084 ~ 26157521 (-)
G1054509 NA non-coding upstream 68687 26175049 ~ 26175286 (-)
G1054684 NA non-coding upstream 306125 26412487 ~ 26416866 (-)
G1054685 NA non-coding upstream 310545 26416907 ~ 26423895 (-)
G1054232 NA other downstream 440605 25657269 ~ 25659005 (-)
G1054211 NA other downstream 474973 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1491790 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1544610 24554697 ~ 24555000 (-)
G1050429 NA other downstream 2855340 23243637 ~ 23244270 (-)
G1055010 NA other upstream 874421 26980783 ~ 26982355 (-)
G1055199 NA other upstream 1038848 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1871664 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 2070024 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2334907 28441269 ~ 28441695 (-)

Expression


Co-expression Network