LOC110537274 (cxb1)


Basic Information

Item Value
gene id LOC110537274
gene name cxb1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26109701 ~ 26113353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937287.1
TCTCCAAGTCTCTTCTACTGCCATGGCAGGAATGACTAAAACAATGGAATTCAATAGATCTGAATTATAACAAGATGGAGAGACCTCAGTTGCCGTTGGCTTTGACGGATATGGAATTAGTCTTGGAGAATTCTGCTTTTTGAGAATTGATGGCTTTATGGAGATTTCCCAATATCTCAGTCGCTGACCAGTGCTGGTCAGACAGTGGTGTTGACTGGTGAAGCGAACCTGGAATCGAAAATGAACTGGGCGTCCTTTTATGCCGTCATCAGCGGTGTAAACAGACATTCCACGGGCATCGGTCGCATCTGGCTCTCTGTTCTTTTCATTTTCCGTATCCTGGTCCTGGTGGTTGCAGCAGAGAGTGTGTGGGGTGATGAGAAGTCCGGCTTCACCTGTAATACCCAGCAGCCCGGCTGCAACAGCGTCTGTTATGACCACTTCTTCCCCATCTCACATATCCGTCTGTGGGCCCTGCAGCTAATTTTGGTGTCCACCCCAGCCCTGCTGGTGGCCATGCATGTGGCCCACCGCCGACACATCGACAAAAAACTCTACAAGCTGTCTGGCCGGGCCAACCCCAAGGACCTGGAGCAAATCAAGACCCAGAAGATGAAGATTGCAGGTGCACTTTGGTGGACATACATCATCAGCCTCTTCTTCCGCATCATCTTTGAGGTAACCTTCATGTACCTCTTCTACATGATCTACCCTGGCTATAAGATGATCCGGCTGGTCAAGTGTGACTCGTACCCCTGCCCCAACACAGTGGACTGCTTTGTGTCCAGGCCCACAGAGAAGACCGTCTTCACTGTGTTCATGCTGGCTGTGTCAGGGATCTGCATCCTGCTCAACATCGCAGAGGTCGTCTTCCTAGTGGGAAAGGCCTGTAGTAGGCACTTAAGCAATGCTGGAGACTCAACCATGGGAGCATGGATCACCCAAAAGCTCTGCTCCTACTAGAACAAGCTAAATGGACCAACACTGTGTAACTGTAATTGGGCACATATGTTCAAAGCTCAAAGTAATGGCCTTAACAACATTAATTAATGAGGTGTTCACACTTTTTCTATACTTTTCAAATAGATATGACTCAAAGGACAATTTCAGTTTGGATATAGAACAAAATCCAGAAGAAGAGACTGAAGAAAAGTATGGTAAACTGATTTATTAACAGTCCCTTACCTTGTAACGTCTCAAATTTAGCTGAATTCAATATGCAGTCACCTTCGATATGCTCTGCAAGATTCAAGCAACTAAACCGACTCATCATCCATTCTGTATTATGATTCATAAATAGTTTTCAATTCCTGATAGACATTTTAATCACTGATAATGTGGTATCATTAGGACAAAGCATTGGTACCCCTGGTTTATTATAAATAGTAACCCAAGAAAACTGTCCAAGTGATGAATTTAACCAACATTTGGTGGTTGTGGTGGAGTATTACTAATAACTATGAGGCTATTCCAAAGCACTACTAATAACTACCTCACTTTCATAGTGAAATATCAAGTGCTTCAAGACATCCACATAGTGTTTTGAATGCTATGAATGAGACTGATTATGCATGTGTATAGAGTAAAATAGAATAGTGAATGAGAAAATGTGCTTAGTTGAAGTTAAAATGAAAGAACCAAATGA
>XM_021623193.2
AGCCGCCCACCAACGTCAAGGCATGTAGAGAGGTTTGGTTTTCTACTGGCCGCACATCAATGTCCACGCTACACCGGCGGGTCAACGTTGTCCTCCACCCTGGGTGCTGCCTATGCCTCTTACACCTCCTGATGAGCTTGACCTGGAATCGAAAATGAACTGGGCGTCCTTTTATGCCGTCATCAGCGGTGTAAACAGACATTCCACGGGCATCGGTCGCATCTGGCTCTCTGTTCTTTTCATTTTCCGTATCCTGGTCCTGGTGGTTGCAGCAGAGAGTGTGTGGGGTGATGAGAAGTCCGGCTTCACCTGTAATACCCAGCAGCCCGGCTGCAACAGCGTCTGTTATGACCACTTCTTCCCCATCTCACATATCCGTCTGTGGGCCCTGCAGCTAATTTTGGTGTCCACCCCAGCCCTGCTGGTGGCCATGCATGTGGCCCACCGCCGACACATCGACAAAAAACTCTACAAGCTGTCTGGCCGGGCCAACCCCAAGGACCTGGAGCAAATCAAGACCCAGAAGATGAAGATTGCAGGTGCACTTTGGTGGACATACATCATCAGCCTCTTCTTCCGCATCATCTTTGAGGTAACCTTCATGTACCTCTTCTACATGATCTACCCTGGCTATAAGATGATCCGGCTGGTCAAGTGTGACTCGTACCCCTGCCCCAACACAGTGGACTGCTTTGTGTCCAGGCCCACAGAGAAGACCGTCTTCACTGTGTTCATGCTGGCTGTGTCAGGGATCTGCATCCTGCTCAACATCGCAGAGGTCGTCTTCCTAGTGGGAAAGGCCTGTAGTAGGCACTTAAGCAATGCTGGAGACTCAACCATGGGAGCATGGATCACCCAAAAGCTCTGCTCCTACTAGAACAAGCTAAATGGACCAACACTGTGTAACTGTAATTGGGCACATATGTTCAAAGCTCAAAGTAATGGCCTTAACAACATTAATTAATGAGGTGTTCACACTTTTTCTATACTTTTCAAATAGATATGACTCAAAGGACAATTTCAGTTTGGATATAGAACAAAATCCAGAAGAAGAGACTGAAGAAAAGTATGGTAAACTGATTTATTAACAGTCCCTTACCTTGTAACGTCTCAAATTTAGCTGAATTCAATATGCAGTCACCTTCGATATGCTCTGCAAGATTCAAGCAACTAAACCGACTCATCATCCATTCTGTATTATGATTCATAAATAGTTTTCAATTCCTGATAGACATTTTAATCACTGATAATGTGGTATCATTAGGACAAAGCATTGGTACCCCTGGTTTATTATAAATAGTAACCCAAGAAAACTGTCCAAGTGATGAATTTAACCAACATTTGGTGGTTGTGGTGGAGTATTACTAATAACTATGAGGCTATTCCAAAGCACTACTAATAACTACCTCACTTTCATAGTGAAATATCAAGTGCTTCAAGACATCCACATAGTGTTTTGAATGCTATGAATGAGACTGATTATGCATGTGTATAGAGTAAAATAGAATAGTGAATGAGAAAATGTGCTTAGTTGAAGTTAAAATGAAAGAACCAAATGA
>XM_021623194.2
TATTGCACATCCTCACTAAACTTTTATTTTATACCCATTGGACAACTGTGAAAAGGATGCCCAGTAGACCACCTCAATTGTGGGTCACCTAGTCCTCGCTTCATGATGTGTCTTCAGTGGGCCTAGCACCCTCTAGAGATGAGATGTTAATCTGTCTGAGGCTTGTTTAAAATTATCTCTCCAAAGTATCCCTCAGAATTGTCAGTTACATTTTTGACAGCAGGTGGGTATACAAGGAAAGGTTAGAATGTCTTTGAAAATACCACACacactgatgcacacacacaccaaataaaTTATGAACAAACAAGCATTTATTTCTCTACTGTTATCTACAAGACTTACTCCCTCTGCATGTGGTTAGACTTTCTTTGTTTGGGTTTAGTAATTTTTACTCCATATTGTGTCAAAACCAGCCTTCACTTCCCTTGCAGTACAGTGCACAATAGATAGGGCAGGCTTCTTTGTGTCCACACAGATTCTTTCCTTTGCTGAGGGTAGGCGGAAACTGAGGCGCTTGATCTGAATTCTAAAGGGGCTTGTTGGATCTAATAAAAGCAGCTATTGTATGTAAATTATTCACACAAGAGCATATGACTCCGACTGTGCAGGGCAGTGGCTAGTGTGAGAGAAATCATTAGCAATGCAAACGCCTGGTGTTCTGGTTCACAGATTCACTAATGGGAAGAAATCCATCTATACTGATGGTAATTCAATTGTTTCTGGGCGTGTTTGTGCACTACTTCTACTGAAGACCTGGAATCGAAAATGAACTGGGCGTCCTTTTATGCCGTCATCAGCGGTGTAAACAGACATTCCACGGGCATCGGTCGCATCTGGCTCTCTGTTCTTTTCATTTTCCGTATCCTGGTCCTGGTGGTTGCAGCAGAGAGTGTGTGGGGTGATGAGAAGTCCGGCTTCACCTGTAATACCCAGCAGCCCGGCTGCAACAGCGTCTGTTATGACCACTTCTTCCCCATCTCACATATCCGTCTGTGGGCCCTGCAGCTAATTTTGGTGTCCACCCCAGCCCTGCTGGTGGCCATGCATGTGGCCCACCGCCGACACATCGACAAAAAACTCTACAAGCTGTCTGGCCGGGCCAACCCCAAGGACCTGGAGCAAATCAAGACCCAGAAGATGAAGATTGCAGGTGCACTTTGGTGGACATACATCATCAGCCTCTTCTTCCGCATCATCTTTGAGGTAACCTTCATGTACCTCTTCTACATGATCTACCCTGGCTATAAGATGATCCGGCTGGTCAAGTGTGACTCGTACCCCTGCCCCAACACAGTGGACTGCTTTGTGTCCAGGCCCACAGAGAAGACCGTCTTCACTGTGTTCATGCTGGCTGTGTCAGGGATCTGCATCCTGCTCAACATCGCAGAGGTCGTCTTCCTAGTGGGAAAGGCCTGTAGTAGGCACTTAAGCAATGCTGGAGACTCAACCATGGGAGCATGGATCACCCAAAAGCTCTGCTCCTACTAGAACAAGCTAAATGGACCAACACTGTGTAACTGTAATTGGGCACATATGTTCAAAGCTCAAAGTAATGGCCTTAACAACATTAATTAATGAGGTGTTCACACTTTTTCTATACTTTTCAAATAGATATGACTCAAAGGACAATTTCAGTTTGGATATAGAACAAAATCCAGAAGAAGAGACTGAAGAAAAGTATGGTAAACTGATTTATTAACAGTCCCTTACCTTGTAACGTCTCAAATTTAGCTGAATTCAATATGCAGTCACCTTCGATATGCTCTGCAAGATTCAAGCAACTAAACCGACTCATCATCCATTCTGTATTATGATTCATAAATAGTTTTCAATTCCTGATAGACATTTTAATCACTGATAATGTGGTATCATTAGGACAAAGCATTGGTACCCCTGGTTTATTATAAATAGTAACCCAAGAAAACTGTCCAAGTGATGAATTTAACCAACATTTGGTGGTTGTGGTGGAGTATTACTAATAACTATGAGGCTATTCCAAAGCACTACTAATAACTACCTCACTTTCATAGTGAAATATCAAGTGCTTCAAGACATCCACATAGTGTTTTGAATGCTATGAATGAGACTGATTATGCATGTGTATAGAGTAAAATAGAATAGTGAATGAGAAAATGTGCTTAGTTGAAGTTAAAATGAAAGAACCAAATGA
>TU1201415
TTTTATACCCATTGGACAACTGTGAAAAGGATGCCCAGTAGACCACCTCAATTGTGGGTCACCTAGTCCTCGCTTCATGATGTGTCTTCAGTGGGCCTAGCACCCTCTAGAGATGAGATGTTAATCTGTCTGAGGCTTGTTTAAAATTATCTCT

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937287.1 False 1645 mRNA 0.43 2 26109701 26111533
XM_021623193.2 False 1559 mRNA 0.45 2 26109701 26111685
XM_021623194.2 False 2173 mRNA 0.43 2 26109701 26113353
TU1201415 True 154 lncRNA 0.44 1 26113174 26113327

Neighbor

gene id symbol gene type direction distance location
LOC110537272 LOC106567774 coding downstream 3339 26099610 ~ 26106362 (-)
trnav-uac-17 NA coding downstream 13047 26096579 ~ 26096654 (-)
zgc:113208 LOC106567768 coding downstream 219902 25885945 ~ 25889799 (-)
LOC110537265 LOC106567767 coding downstream 228265 25876456 ~ 25881436 (-)
aifm1 aifm1 coding downstream 237507 25854329 ~ 25872194 (-)
igbp1 LOC106567775 coding upstream 183 26113536 ~ 26116579 (-)
wnt11f2 LOC106568050 coding upstream 22443 26135796 ~ 26138363 (-)
LOC110537277 LOC106567777 coding upstream 32624 26145977 ~ 26210191 (-)
fam155b LOC106567779 coding upstream 102566 26215919 ~ 26264356 (-)
c12hxorf56 cssa13hxorf56 coding upstream 526353 26639706 ~ 26645901 (-)
G1054474 LOC106567773 non-coding downstream 23506 26085074 ~ 26086195 (-)
G1054466 LOC106567773 non-coding downstream 31192 26077471 ~ 26078509 (-)
G1054394 NA non-coding downstream 115548 25985418 ~ 25994153 (-)
G1054419 NA non-coding downstream 130873 25977868 ~ 25978828 (-)
G1054363 NA non-coding downstream 199821 25909631 ~ 25909880 (-)
G1054490 NA non-coding upstream 15731 26129084 ~ 26157521 (-)
G1054509 NA non-coding upstream 61696 26175049 ~ 26175286 (-)
G1054684 NA non-coding upstream 299134 26412487 ~ 26416866 (-)
G1054685 NA non-coding upstream 303554 26416907 ~ 26423895 (-)
G1054885 NA non-coding upstream 628336 26741689 ~ 26741938 (-)
G1054232 NA other downstream 450696 25657269 ~ 25659005 (-)
G1054211 NA other downstream 485064 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1501881 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1554701 24554697 ~ 24555000 (-)
G1050429 NA other downstream 2865431 23243637 ~ 23244270 (-)
G1055010 NA other upstream 867430 26980783 ~ 26982355 (-)
G1055199 NA other upstream 1031857 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1864673 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 2063033 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2327916 28441269 ~ 28441695 (-)

Expression


Co-expression Network