igbp1 (LOC106567775)


Basic Information

Item Value
gene id igbp1
gene name LOC106567775
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26113536 ~ 26116579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623192.2
ATGAATACGGAAGCCGATAGTAGTCATTACATAGAAAAAAGGCAAAAATGGCAGCCGCTGAAAGTACTAGCTTGTCACCAAGTCAGGCAGAAGAACCGCCTAAACTATCTGATTTGTTAGATCGGGGATGGAAACTATATGAGGAGGTGGACACCACAAACGATCCCATCGCAGCTACCCATATCCAGGTTAAAATCAAGCGTGGGATAACGCAACTGGAAGAGGCAACGCGGATGGTTGCCCAGCTCGACTTGTTCagccGAAATGAAGAATTGGAGGAGGTAGCAACCACAGATCTGAAGTATCTGATGTTGCCTGTCCTCCTGGGGGCTCTTACTATGAAGCAAGTGAACCTGGCAAAACGACTAGAGCAAGTTCAGATAGCAAGATGTTACTTTTTGGACTTCTTGAAAAGATGTAAGGAGTATAACATATCAAAGTTTGAACTACCCAAAACCAATGAAAACTCTGCTGGCACACTGGAAGAAGAATCTGCAAATGGGCCCCCCAAACCTCCGGACTTGATTGCAATGGCGACAGTAAGAGCGGCAAAGATAGAAAGATACACCCAGAGGAAGAACACAGAGGCCAAGCTATCAGAGATCAAGGCAGCAGTGGACAGTGGGCAGGCAGATGACGAGATAGTTAGAGACTTCTACCTCCTCAACTTGAGGAAATGGATTGTTGTATCCCTGGAGGAGATTGAGAGCATTGATCAGGAAATTGAGATTTTGACCAGGATGGATGTTCTAAAACAGAGTTCAGCAGAGCCATCACAATCTAAAAGGCCTCCCATGAAACCCTTCATTCTCACCAAAGATGCTGTTCAGGCCAAAGTGTTTGGGGCTGGCTATCCCAGCCTGCCTACTATGTCTGTGGATGACTGGTATGAGCAGCACAGGAAGAAAAATGCCCTGCCGGACCAGGGGATCCCTCGCAGCACTGAGGACGTTGATGGAGAAGAGCGAGAgcaagaagagaaagagaagcgGGTTGAAAATGATGACGAGGAGGCCTTGCAGAAAGCTAGAGACTGGGACAACTGGAAGGATACACATCAGAGAGGCTATGGGAACCGTAAAAACATGGGCTGACAACCATCAAACACAGCAACAGTGCCAACCTGGTCTGCAGTATTCATCTGCTCTTATTCCCTCTTAAATACATTTGAACAAGTTGCCAGTGTATATGGAAAGATGGCCTTGAAGAAAAGGCAGGTTTATACAATCCCAGACAGAAACTGTTCATAAGTGTCTGTTTATGGTCTCTTTTTCTTCTGATGCCGCATATCACAGTTTTCATTGTGGCCATATCAGAGGAACATTATTTAGTGGCAGCCATTAATATGATCTGTAGGCTCTATGCAAATATACAACTAAGCATTGACAACAAGGCCCAGTCTCTGTCGAGACAGCACCGTGCTGTGCTTAAGAAGATTAGTAAGTGAATTTGATGATATTGTCTAACAGCTGCTCCCAAACAGAGTAATACAGAGTATCCAGCGAAACTTAAACTGTTGACTTGTGAAATGCCCTATGAAGGTGGTAGTAACACTCTACAGGTACAACAAATTGATTGAATTTTGTCATCCATACTTCATCTAATTGGTTATGTTAGCTCATGTGCTTATACCTAGAAGATGTGCATCACAAGAAACTCCAATATTGAAAGATGTTTCCTCTGATCAATGTCCATTGTGAAACTGAATAATAGTTTGCTATGTAGGTATGATATGTAGCTACCACTTTTCATCTTGTTTTGCTTTTTGTTAAAGAACTGTGTTTGTGAAAGCCAATTTTCTCTTCTCAAAAGTATGGCTGACTCATTTAATTTATTTTCCACCTCTTACAAATGTACAGTTTGAACAGGCACTGGTTTTGACAGACTTGGTGGATTCCTTTGTCAGAGTTGATAACTCTTGGTCTATTTTCTCCACAATAGCAGGAATTCTGTATGGTCTCCACTGTAACAAGAAATTATTTGAGTGTTTTGTACTTTTTCcccattgattcttaaagaagTTGCTAGTGCATTGAAAATATGGATACGGTCCAGAATAAATATGATACAGAAA

Function

NR:

description
immunoglobulin-binding protein 1-like

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG:

id description
K17606 IGBP1, TAP42; immunoglobulin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623192.2 True 2074 mRNA 0.42 6 26113536 26116579

Neighbor

gene id symbol gene type direction distance location
LOC110537274 cxb1 coding downstream 183 26109701 ~ 26113353 (-)
LOC110537272 LOC106567774 coding downstream 7174 26099610 ~ 26106362 (-)
trnav-uac-17 NA coding downstream 16882 26096579 ~ 26096654 (-)
zgc:113208 LOC106567768 coding downstream 223737 25885945 ~ 25889799 (-)
LOC110537265 LOC106567767 coding downstream 232100 25876456 ~ 25881436 (-)
wnt11f2 LOC106568050 coding upstream 19217 26135796 ~ 26138363 (-)
LOC110537277 LOC106567777 coding upstream 29398 26145977 ~ 26210191 (-)
fam155b LOC106567779 coding upstream 99340 26215919 ~ 26264356 (-)
c12hxorf56 cssa13hxorf56 coding upstream 523127 26639706 ~ 26645901 (-)
stard8 LOC106567782 coding upstream 558399 26674978 ~ 26717652 (-)
G1054474 LOC106567773 non-coding downstream 27341 26085074 ~ 26086195 (-)
G1054466 LOC106567773 non-coding downstream 35027 26077471 ~ 26078509 (-)
G1054394 NA non-coding downstream 119383 25985418 ~ 25994153 (-)
G1054419 NA non-coding downstream 134708 25977868 ~ 25978828 (-)
G1054490 NA non-coding upstream 12505 26129084 ~ 26157521 (-)
G1054509 NA non-coding upstream 58470 26175049 ~ 26175286 (-)
G1054684 NA non-coding upstream 295908 26412487 ~ 26416866 (-)
G1054685 NA non-coding upstream 300328 26416907 ~ 26423895 (-)
G1054885 NA non-coding upstream 625110 26741689 ~ 26741938 (-)
G1054232 NA other downstream 454531 25657269 ~ 25659005 (-)
G1054211 NA other downstream 488899 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1505716 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1558536 24554697 ~ 24555000 (-)
G1050429 NA other downstream 2869266 23243637 ~ 23244270 (-)
G1055010 NA other upstream 864204 26980783 ~ 26982355 (-)
G1055199 NA other upstream 1028631 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1861447 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 2059807 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2324690 28441269 ~ 28441695 (-)

Expression


Co-expression Network