LOC110537277 (LOC106567777)


Basic Information

Item Value
gene id LOC110537277
gene name LOC106567777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26145977 ~ 26210191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623200.2
AGACGGAGGGGCGGATCTAACAAACGGGATCACTTTATTTTACAGTATCAGTGTGTGGGTTACCGTACCGTCCCCTGACTAGATGTAGATGGAGATAACTGTCACTGTGCTATCGTTTGAATATCAGTCAGCTCAGGTTAGGGACATAGCATCATAGACAAAAGCCGAGTATGCTGAAATAGCAACGACTGAAAGAGTATTTAGACATGGCACCCAAATCGCTGTCTGAAAAGTTAGCAAATTTAGAGGACAGTGACTTAAAAGAGTCTACCTGCATTTGCAGGAAACAGTGTAAGAACTGTAAAATCTTTCTGGGATTCTTCGTCTTATCCCTTTCATTGCATCTAGTTACGCTTTTCTGTTATTTGGACCTGAGATCCGAAGTGAAACGCGAGATTCTccagaagaacagagaggagacactGTCACCGGCCGCAACTGATATGAATGACCGATATTCTCCAGTATTCCAGCTGTTGGATATCAGCTACCCAGCTGATCTGCAGAATAGGTTGCCTCTGGGGAACAGTGACGAAAGCTCTCACCTCAAAGAAGACAGAGACAATGCTGTCCATCGCACCAAAAGGAGCCAGCAGAATAAACGACTTGATTCAGAATCACATGGAAACAAACGAAAAGAAAGGAAAAAAGGTAAGAAGGGCCCTCCGGGTGCACCTGGCCCCCTAGGCCCTCCAGGGCCACAGGGGCCACCTGGTATTCCTGGCATTCCAGGCATCCCTGGGAACAACGCCATGGGCCCCTCAGGACCACCCGGACCTCCAGGCCCTGCTGGACCCCCAGGGCCACAGGGACCCCCTGGTCTTCAAGGACCCTCAGGGGGCAGAGTCAGAGATAGCCAGCCGGCTGTGGTACATCTCCAAGGCCAGGAAACAACAATACAGGTCAAGGAAGAAGGCGTACTGAGAAACTGGAAAATGATATCCATGCATCACAAGGTGTTCAAGATGCACTCGAGATCTGGGGAGCTGGAGGTGTTGGTAGATGGCACCTACTTCATCTATAGTCAGGTAGAAGTTTACTACCTCAACTTCACTGACATTGCTAGCTATGAGGTGATGGTGGACAAGACGCCGTTCCTGCGCTGTACGCGGAGCATTGAGACGGGACAGCGCAAGTTCAACACCTGCTACACGGCTGGGGTGTGTCTGTTGCGTGCCCGGCAGAAGATCTCCATCAAGATGGTGTACGAGGACACCTCCATCAGCATGACCAACCACACCACCTTCTTGGGGAGCATCCGCCTCGGGGATGCCCCCCCGGCCAGCCACTCCTGAAGTGGCAGGCCTACCAACCTGTTTGTCAAGCCACGACCCACCCCTCTACCAGCATATCCACTTATGGCCTGGGGGAGGCTCCTCCCACTCTACTCTTCCTCtgcaaccatcaccaccacctatCACATATCAACCAATAGGAGATGAGGATGCCCACCTACTCCAGAGATGACATCATGTACAGTACTAAAGTATCTGCCCTCAGCCTGGGCCAGGCCCGCCCCTTCAGGCTACTACTGAGCTGATAAGCCCCACCCTCCCTTATAATAGTGGGATGACCTGGTGTAATGATATTAACCGCTGCCTGTTATCTCTTAATGGAAGATTCCTTCCACAGAGCGATGATGACTATGACCTTCGGAGGTGATGATGGACAAATATGCACCCAACGTGTCTTAGCATTAAGAAAGGGAGGAGTTGTTTGAAGAAATAAATACATTAGACTTTACTTTTAGAATTGTGCATTTATAGATAATAACTTGGTTTCCCTGGTCATGACATGCTTGAGAAACCAAGGTTGACAGGAGTCAGTCATGTCTCCACTGAAAGAACTGTCTGTTAGTTAGACAACATAGGTACATACTGTAAACGTTTTTTGAAAACAATATAGAAATACAATGTGTGGCAGTTGTCTGATGAAATTAACATTTATAGCTGAAACAAAAACATTTCTCTGTTAGAATGTGCACTGGTTAAAGCAAATGATTGATCTGTAGGCaaatccctctcactctctgtctccctctatctctctctctctctctctctccctccctctctctctccctctctctc
>XM_021623197.2
AGAGACGGAGGGGCGGATCTAACAAACGGGATCACTTTATTTTACAGTATCAGTGTGTGGGTTACCGTACCGTCCCCTGACTAGATGTAGATGGAGATAACTGTCACTGTGCTATCGTTTGAATATCAGTCAGCTCAGGTTAGGGACATAGCATCATAGACAAAAGCCGAGTATGCTGAAATAGCAACGACTGAAAGAGTATTTAGACATGGCACCCAAATCGCTGTCTGAAAAGTTAGCAAATTTAGAGGACAGTGACTTAAAAGAGTCTACCTGCATTTGCAGGAAACAGTGTAAGAACTGTAAAATCTTTCTGGGATTCTTCGTCTTATCCCTTTCATTGCATCTAGTTACGCTTTTCTGTTATTTGGACCTGAGATCCGAAGTGAAACGCGAGATTCTccagaagaacagagaggagacactGTCACCGGCCGCAACTGATATGAATGACCGATATTCTCCAGTATTCCAGCTGTTGGATATCAGCTACCCAGCTGATCTGCAGAATAGGTTGCCTCTGGGGAACAGTGACGAAAGCTCTCACCTCAAAGAAGACAGAGACAATGCTGTCCATCGCACCAAAAGGAGCCAGCAGAATAAACGACTTGATTCAGAATCACATGGAAACAAACGAAAAGAAAGGAAAAAAGGTAAGAAGGGCCCTCCGGGTGCACCTGGCCCCCTAGGCCCTCCAGGGCCACAGGGGCCACCTGGTATTCCTGGCATTCCAGGCATCCCTGGGAACAACGCCATGGGCCCCTCAGGACCACCCGGACCTCCAGGCCCTGCTGGACCCCCAGGGCCACAGGGACCCCCTGGTCTTCAAGGACCCTCAGGGGGCAGAGTCAGAGATAGCCAGCCGGCTGTGGTACATCTCCAAGGCCAGGAAACAACAATACAGGTCAAGGAAGATCTTTCAGAAGGCGTACTGAGAAACTGGAAAATGATATCCATGCATCACAAGGTGTTCAAGATGCACTCGAGATCTGGGGAGCTGGAGGTGTTGGTAGATGGCACCTACTTCATCTATAGTCAGGTAGAAGTTTACTACCTCAACTTCACTGACATTGCTAGCTATGAGGTGATGGTGGACAAGACGCCGTTCCTGCGCTGTACGCGGAGCATTGAGACGGGACAGCGCAAGTTCAACACCTGCTACACGGCTGGGGTGTGTCTGTTGCGTGCCCGGCAGAAGATCTCCATCAAGATGGTGTACGAGGACACCTCCATCAGCATGACCAACCACACCACCTTCTTGGGGAGCATCCGCCTCGGGGATGCCCCCCCGGCCAGCCACTCCTGAAGTGGCAGGCCTACCAACCTGTTTGTCAAGCCACGACCCACCCCTCTACCAGCATATCCACTTATGGCCTGGGGGAGGCTCCTCCCACTCTACTCTTCCTCtgcaaccatcaccaccacctatCACATATCAACCAATAGGAGATGAGGATGCCCACCTACTCCAGAGATGACATCATGTACAGTACTAAAGTATCTGCCCTCAGCCTGGGCCAGGCCCGCCCCTTCAGGCTACTACTGAGCTGATAAGCCCCACCCTCCCTTATAATAGTGGGATGACCTGGTGTAATGATATTAACCGCTGCCTGTTATCTCTTAATGGAAGATTCCTTCCACAGAGCGATGATGACTATGACCTTCGGAGGTGATGATGGACAAATATGCACCCAACGTGTCTTAGCATTAAGAAAGGGAGGAGTTGTTTGAAGAAATAAATACATTAGACTTTACTTTTAGAATTGTGCATTTATAGATAATAACTTGGTTTCCCTGGTCATGACATGCTTGAGAAACCAAGGTTGACAGGAGTCAGTCATGTCTCCACTGAAAGAACTGTCTGTTAGTTAGACAACATAGGTACATACTGTAAACGTTTTTTGAAAACAATATAGAAATACAATGTGTGGCAGTTGTCTGATGAAATTAACATTTATAGCTGAAACAAAAACATTTCTCTGTTAGAATGTGCACTGGTTAAAGCAAATGATTGATCTGTAGGCaaatccctctcactctctgtctccctctatctctctctctctctctctctccctccctctctctctccctctctctc
>XM_021623201.2
CAATGAGAGACGGAGGGGCGGATCTAACAAACGGGATCACTTTATTTTACAGTATCAGTGTGTGGGTTACCGTACCGTCCCCTGACTAGATGTAGATGGAGATAACTGTCACTGTGCTATCGTTTGAATATCAGTCAGCTCAGGTTAGGGACATAGCATCATAGACAAAAGCCGAGTATGCTGAAATAGCAACGACTGAAAGAGTATTTAGACATGGCACCCAAATCGCTGTCTGAAAAGTTAGCAAATTTAGAGGACAGTGACTTAAAAGAGTCTACCTGCATTTGCAGGAAACAGTGTAAGAACTGTAAAATCTTTCTGGGATTCTTCGTCTTATCCCTTTCATTGCATCTAGTTACGCTTTTCTGTTATTTGGACCTGAGATCCGAAGTGAAACGCGAGATTCTccagaagaacagagaggagacactGTCACCGGCCGCAACTGATATGAATGACCGATATTCTCCAGTATTCCAGCTGTTGGATATCAGCTACCCAGCTGATCTGCAGAATAGGTTGCCTCTGGGGAACAGTGACGAAAGCTCTCACCTCAAAGAAGACAGAGACAATGCTGTCCATCGCACCAAAAGGAGCCAGCAGAATAAACGACTTGATTCAGAATCACATGGAAACAAACGAAAAGAAAGGAAAAAAGGTAAGAAGGGCCCTCCGGGTGCACCTGGCCCCCTAGGCCCTCCAGGGCCACAGGGGCCACCTGGTATTCCTGGCATTCCAGGCATCCCTGGGAACAACGCCATGGGCCCCTCAGGACCACCCGGACCTCCAGGCCCTGCTGGACCCCCAGGGCCACAGGGACCCCCTGGTCTTCAAGGACCCTCAGGGGGCAGAGTCAGAGATAGCCAGCCGGCTGTGGTACATCTCCAAGGCCAGGAAACAACAATACAGGTCAAGGAAGAAGGCGTACTGAGAAACTGGAAAATGATATCCATGCATCACAAGGTGTTCAAGATGCACTCGAGATCTGGGGAGCTGGAGGTGTTGGTAGATGGCACCTACTTCATCTATAGTCAGGTTTACTACCTCAACTTCACTGACATTGCTAGCTATGAGGTGATGGTGGACAAGACGCCGTTCCTGCGCTGTACGCGGAGCATTGAGACGGGACAGCGCAAGTTCAACACCTGCTACACGGCTGGGGTGTGTCTGTTGCGTGCCCGGCAGAAGATCTCCATCAAGATGGTGTACGAGGACACCTCCATCAGCATGACCAACCACACCACCTTCTTGGGGAGCATCCGCCTCGGGGATGCCCCCCCGGCCAGCCACTCCTGAAGTGGCAGGCCTACCAACCTGTTTGTCAAGCCACGACCCACCCCTCTACCAGCATATCCACTTATGGCCTGGGGGAGGCTCCTCCCACTCTACTCTTCCTCtgcaaccatcaccaccacctatCACATATCAACCAATAGGAGATGAGGATGCCCACCTACTCCAGAGATGACATCATGTACAGTACTAAAGTATCTGCCCTCAGCCTGGGCCAGGCCCGCCCCTTCAGGCTACTACTGAGCTGATAAGCCCCACCCTCCCTTATAATAGTGGGATGACCTGGTGTAATGATATTAACCGCTGCCTGTTATCTCTTAATGGAAGATTCCTTCCACAGAGCGATGATGACTATGACCTTCGGAGGTGATGATGGACAAATATGCACCCAACGTGTCTTAGCATTAAGAAAGGGAGGAGTTGTTTGAAGAAATAAATACATTAGACTTTACTTTTAGAATTGTGCATTTATAGATAATAACTTGGTTTCCCTGGTCATGACATGCTTGAGAAACCAAGGTTGACAGGAGTCAGTCATGTCTCCACTGAAAGAACTGTCTGTTAGTTAGACAACATAGGTACATACTGTAAACGTTTTTTGAAAACAATATAGAAATACAATGTGTGGCAGTTGTCTGATGAAATTAACATTTATAGCTGAAACAAAAACATTTCTCTGTTAGAATGTGCACTGGTTAAAGCAAATGATTGATCTGTAGGCaaatccctctcactctctgtctccctctatctctctctctctctctctctccctccctctctctctccctctctctc
>XM_021623199.2
GCCAATGAGAGACGGAGGGGCGGATCTAACAAACGGGATCACTTTATTTTACAGTATCAGTGTGTGGGTTACCGTACCGTCCCCTGACTAGATGTAGATGGAGATAACTGTCACTGTGCTATCGTTTGAATATCAGTCAGCTCAGGTTAGGGACATAGCATCATAGACAAAAGCCGAGTATGCTGAAATAGCAACGACTGAAAGAGTATTTAGACATGGCACCCAAATCGCTGTCTGAAAAGTTAGCAAATTTAGAGGACAGTGACTTAAAAGAGTCTACCTGCATTTGCAGGAAACAGTGTAAGAACTGTAAAATCTTTCTGGGATTCTTCGTCTTATCCCTTTCATTGCATCTAGTTACGCTTTTCTGTTATTTGGACCTGAGATCCGAAGTGAAACGCGAGATTCTccagaagaacagagaggagacactGTCACCGGCCGCAACTGATATGAATGACCGATATTCTCCAGTATTCCAGCTGTTGGATATCAGCTACCCAGCTGATCTGCAGAATAGGTTGCCTCTGGGGAACAGTGACGAAAGCTCTCACCTCAAAGAAGACAGAGACAATGCTGTCCATCGCACCAAAAGGAGCCAGCAGAATAAACGACTTGATTCAGAATCACATGGAAACAAACGAAAAGAAAGGAAAAAAGGTAAGAAGGGCCCTCCGGGTGCACCTGGCCCCCTAGGCCCTCCAGGGCCACAGGGGCCACCTGGTATTCCTGGCATTCCAGGCATCCCTGGGAACAACGCCATGGGCCCCTCAGGACCACCCGGACCTCCAGGCCCTGCTGGACCCCCAGGGCCACAGGGACCCCCTGGTCTTCAAGGACCCTCAGGGGGCAGAGTCAGAGATAGCCAGCCGGCTGTGGTACATCTCCAAGGCCAGGAAACAACAATACAGGTCAAGGAAGATCTTTCAGAAGGCGTACTGAGAAACTGGAAAATGATATCCATGCATCACAAGGTGTTCAAGATGCACTCGAGATCTGGGGAGCTGGAGGTGTTGGTAGATGGCACCTACTTCATCTATAGTCAGGTTTACTACCTCAACTTCACTGACATTGCTAGCTATGAGGTGATGGTGGACAAGACGCCGTTCCTGCGCTGTACGCGGAGCATTGAGACGGGACAGCGCAAGTTCAACACCTGCTACACGGCTGGGGTGTGTCTGTTGCGTGCCCGGCAGAAGATCTCCATCAAGATGGTGTACGAGGACACCTCCATCAGCATGACCAACCACACCACCTTCTTGGGGAGCATCCGCCTCGGGGATGCCCCCCCGGCCAGCCACTCCTGAAGTGGCAGGCCTACCAACCTGTTTGTCAAGCCACGACCCACCCCTCTACCAGCATATCCACTTATGGCCTGGGGGAGGCTCCTCCCACTCTACTCTTCCTCtgcaaccatcaccaccacctatCACATATCAACCAATAGGAGATGAGGATGCCCACCTACTCCAGAGATGACATCATGTACAGTACTAAAGTATCTGCCCTCAGCCTGGGCCAGGCCCGCCCCTTCAGGCTACTACTGAGCTGATAAGCCCCACCCTCCCTTATAATAGTGGGATGACCTGGTGTAATGATATTAACCGCTGCCTGTTATCTCTTAATGGAAGATTCCTTCCACAGAGCGATGATGACTATGACCTTCGGAGGTGATGATGGACAAATATGCACCCAACGTGTCTTAGCATTAAGAAAGGGAGGAGTTGTTTGAAGAAATAAATACATTAGACTTTACTTTTAGAATTGTGCATTTATAGATAATAACTTGGTTTCCCTGGTCATGACATGCTTGAGAAACCAAGGTTGACAGGAGTCAGTCATGTCTCCACTGAAAGAACTGTCTGTTAGTTAGACAACATAGGTACATACTGTAAACGTTTTTTGAAAACAATATAGAAATACAATGTGTGGCAGTTGTCTGATGAAATTAACATTTATAGCTGAAACAAAAACATTTCTCTGTTAGAATGTGCACTGGTTAAAGCAAATGATTGATCTGTAGGCaaatccctctcactctctgtctccctctatctctctctctctctctctctccctccctctctctctccctctctctc

Function

NR:

description
ectodysplasin-A-like isoform X2

GO: NA

KEGG:

id description
K05480 EDA; ectodysplasin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623200.2 False 2090 mRNA 0.49 8 26145977 26210182
XM_021623197.2 False 2101 mRNA 0.49 8 26145977 26210184
XM_021623201.2 False 2091 mRNA 0.49 8 26145977 26210189
XM_021623199.2 True 2102 mRNA 0.49 8 26145977 26210191

Neighbor

gene id symbol gene type direction distance location
wnt11f2 LOC106568050 coding downstream 7614 26135796 ~ 26138363 (-)
igbp1 LOC106567775 coding downstream 29398 26113536 ~ 26116579 (-)
LOC110537274 cxb1 coding downstream 32624 26109701 ~ 26113353 (-)
LOC110537272 LOC106567774 coding downstream 39615 26099610 ~ 26106362 (-)
trnav-uac-17 NA coding downstream 49323 26096579 ~ 26096654 (-)
fam155b LOC106567779 coding upstream 5728 26215919 ~ 26264356 (-)
c12hxorf56 cssa13hxorf56 coding upstream 429515 26639706 ~ 26645901 (-)
stard8 LOC106567782 coding upstream 464787 26674978 ~ 26717652 (-)
LOC110537285 LOC106567783 coding upstream 521260 26731451 ~ 26739037 (-)
ar-alpha ar-alpha coding upstream 599162 26809353 ~ 26863253 (-)
G1054474 LOC106567773 non-coding downstream 59782 26085074 ~ 26086195 (-)
G1054466 LOC106567773 non-coding downstream 67468 26077471 ~ 26078509 (-)
G1054394 NA non-coding downstream 151824 25985418 ~ 25994153 (-)
G1054419 NA non-coding downstream 167149 25977868 ~ 25978828 (-)
G1054684 NA non-coding upstream 202296 26412487 ~ 26416866 (-)
G1054685 NA non-coding upstream 206716 26416907 ~ 26423895 (-)
G1054885 NA non-coding upstream 531498 26741689 ~ 26741938 (-)
G1054914 NA non-coding upstream 569639 26779830 ~ 26786466 (-)
G1054920 LOC106567784 non-coding upstream 581950 26792141 ~ 26792628 (-)
G1054232 NA other downstream 486972 25657269 ~ 25659005 (-)
G1054211 NA other downstream 521340 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 1538157 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 1590977 24554697 ~ 24555000 (-)
G1050429 NA other downstream 2901707 23243637 ~ 23244270 (-)
G1055010 NA other upstream 770592 26980783 ~ 26982355 (-)
G1055199 NA other upstream 935019 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1767835 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1966195 28176386 ~ 28177073 (-)
G1057600 NA other upstream 2231078 28441269 ~ 28441695 (-)

Expression


Co-expression Network