c12hxorf56 (cssa13hxorf56)


Basic Information

Item Value
gene id c12hxorf56
gene name cssa13hxorf56
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26639706 ~ 26645901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623205.2
TACACGCCTTTATATGACGTACAAGGTCTACGTAATCGTTAATCGACAAGCTAGCAGCATGCTAACGCTGTTAGATAAAGCAAAACGTTTTTTTGTCTATTGACTTTTTGCTTACAACGTTTGCCCAATTTCAAGTAGCTAACCTTAGGAACAATGCCGAAAGTCGTCTCACGAAGTGTTGTTTGTTCAGACACCCGAGATCGAGAGGAATACGATGACGGAGAAAAGCCTCTTCATGTTTATTATTGTCTGTGTGGGCAAATGGTGTTGGTTCTCGACTGTCAACTGGAGAAACTACCGATGCGGCCACGAGACAAAGCAAGAGTAATAGATGCTGCCAAACATGCACATAAGTTCTGTAATGTAGAAGACGATGAGAATGTTTACATAAAAAGGGCAGAAGGAATTGAAAGGCAGTATCGCAAGAAATGTGGAAAGTGTGGCCTACTTCTTTTCTATCAACACCAAATGAAGAATACTCCAGTTACATTCATCGTTGATGGAGCTGTTGTCAAGTTTGGCCTTGGGATTGGGAATACCAGTGTCTACAGTCAAAAGCCAGAGGCTCCTAAAAAAGTCAGGGTAATGATGACAAAAAGGACCAAAGACATGGGGAAATTCAGCTCTGTCACCGTGTCTACTgttgatgaggaggaagaggaaattgAGGCGAGAGAAATTGCTGACTCGTATGCCCAGAATGCTAAAGTGATTGAGAAGCAGTTGGAAAGGAAGGGGATGAGCAAGAAGAGACTACAAGAGCTGGCTGAACTGGAGGCAAAGACAACCAAGATGAAAGGCACCCTCATTGATAACCAGTTCAAATAGAGGGATGTGGGATGTGAGAGAAGCAGGACAGTTGTACATACTTTAACTCAAATGTACATAGAGATTTGCACTCTATGGCCCCTTTGAAATGTATTATGAAGCATTTTGGCTATGTTTTATATACTGTAAGAAAATTGTTATGTTGATTTAGAATTAAATGTGGAGCAGTGGCATACAGTAATGTTATTTTGAATTTGATTTGTCAATTCAGCTGAGAAATAAAATGTGCTTGAATTAAGTATTGATGCTTGAAGTACTATCGCACTATATATGGAAACCATAGCGGGAAAAGTGGTTGTTATGGATTTAACAGGAATGCACACTTACATGAGATGAATTCCAATTTGTATTATTTTGTCACAGCTGTTCTATAATatgtatttgtatgttttatgtggatcccaggaagagtagctgctgcacgTGCAGTAGCTAATatggatcctaataaactaaactcCTTAGAGAAA

Function

NR:

description
PREDICTED: UPF0428 protein CXorf56 homolog

GO: NA

KEGG:

id description
K24996 STEEP1; STING ER exit protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623205.2 True 1298 mRNA 0.40 7 26639706 26645901

Neighbor

gene id symbol gene type direction distance location
fam155b LOC106567779 coding downstream 375350 26215919 ~ 26264356 (-)
LOC110537277 LOC106567777 coding downstream 429515 26145977 ~ 26210191 (-)
wnt11f2 LOC106568050 coding downstream 501343 26135796 ~ 26138363 (-)
igbp1 LOC106567775 coding downstream 523127 26113536 ~ 26116579 (-)
LOC110537274 cxb1 coding downstream 526353 26109701 ~ 26113353 (-)
stard8 LOC106567782 coding upstream 29077 26674978 ~ 26717652 (-)
LOC110537285 LOC106567783 coding upstream 85550 26731451 ~ 26739037 (-)
ar-alpha ar-alpha coding upstream 163452 26809353 ~ 26863253 (-)
LOC110537288 NA coding upstream 240132 26886033 ~ 26888305 (-)
LOC110537289 NA coding upstream 249864 26895765 ~ 26896913 (-)
G1054685 NA non-coding downstream 215811 26416907 ~ 26423895 (-)
G1054684 NA non-coding downstream 222840 26412487 ~ 26416866 (-)
G1054509 NA non-coding downstream 464420 26175049 ~ 26175286 (-)
G1054490 NA non-coding downstream 482185 26129084 ~ 26157521 (-)
G1054885 NA non-coding upstream 95788 26741689 ~ 26741938 (-)
G1054914 NA non-coding upstream 133929 26779830 ~ 26786466 (-)
G1054920 LOC106567784 non-coding upstream 146240 26792141 ~ 26792628 (-)
G1054951 NA non-coding upstream 224763 26870664 ~ 26871675 (-)
G1054957 LOC106567786 non-coding upstream 235821 26881722 ~ 26883442 (-)
G1054232 NA other downstream 980701 25657269 ~ 25659005 (-)
G1054211 NA other downstream 1015069 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 2031886 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 2084706 24554697 ~ 24555000 (-)
G1050429 NA other downstream 3395436 23243637 ~ 23244270 (-)
G1055010 NA other upstream 334882 26980783 ~ 26982355 (-)
G1055199 NA other upstream 499309 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1332125 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1530485 28176386 ~ 28177073 (-)
G1057600 NA other upstream 1795368 28441269 ~ 28441695 (-)

Expression


Co-expression Network