LOC110537285 (LOC106567783)


Basic Information

Item Value
gene id LOC110537285
gene name LOC106567783
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26731451 ~ 26739037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623209.2
atttggacatgatatGCAAAACAATGCtaatatcggtcccatgacttgaatgggatttgtgccacaaatgctaaaaagttAGCATGTGGAAACTTTCCAACTGATATTTACGATTTCACAACTGGTAAATACCACCTTCCCACCTGGTTAGAACGCAGCATTAGGCACTTGACATCCTGGTCAAAACATTTGGATGACGTTTCATATCCGTGTGGACAGAGAAAATGGTGGAAGTGGAGGAGACAAGTAAATTTATGTTTGCAGGTCTGTCAGATGTGTCCATTTCAGGGGACATTGCTGTTGAGGGGGAGATCAATGTCCCTGTTGGAACACCGAGTCAGGACAAAAAATACTCCACACTGGATGAACCTGTTAAAGATACCATATTGCGAGATCTGAAAGCAGTGGGGAAAAAGTTTGTTCATGTGATGTATCCCAAGAAGAGTTCAGCGCTACTGAGAGACTGGGACTTGTGGGGACCATTATTGCTCTGCGTGACACTGGCTCTGATGCTGCAGGGTGGTTCAGTTGACAGTAAGGAGGACAGAGGGCCCCAGTTTGCAGAGGTGTTTGTGATCATCTGGTTTGGATCTGTCATCATCACACTGAACTCGAAGCTGTTGGGAGGCACCATatctTTTTTCCAGAGCCTGTGTGTGCTAGGCTACTGCATCATGCCTCTGACCGTGGCAATGGTCGTCTGTAGGCTAGTGCTGCTGGGTGGGTCTTGGGGGTTCAGCTTTATCGTCCGACTAATTGTGGTCACAGCATCATTCAGTTGGTCCACGTTTGCCTCTACAGCTTTCTTAGCAGATTGCCAGCCTCCCAATCGCAAAGCTTTGGTGGTGTATCCTGTCTTCCTTTTTTACTTCGTCATTGGATGGATGATCCTCACATTCTCACCGTCTGCGTAACAGTGGACTTATCTCTAAACTGAACTTATCCCAATCCTTTTGGAATAGAAGGATACAAATCAACACCTTGCCATTTGTGAAAGTTGAGTGGAGTGTTGGGAGTACTTTTGATGGAAAACATTGTATGTTTCTTTGGAGCAACAAGGAAAATGGTGAGATTTTAACCATAGTGCACAATGCTTTGCCTCTTTCTCTAAGCATAGCTAAGAAATACAGTGGAGTACAATGGACAAGTGTCAGTGAGTCCCTATAAGGATGTCAGAAAAGCCTATCTGCTTGATTTAACAAGCTCTCTGTGTCTCACACATGAAGAGATTACTTATCTCAATTGTTTCCTGCCTTGTAAATTATCTTACAATACCAACTAAGGTTCCTACACTAAGCACATTCCCCACTGTAATGTTAAAAATTCATCATAACATGTAGACTAGCAGGAATAAAGGGGACCATGTGATCTATATTGTATGTGTCATGGTCTATTGCCATTTACTTATGAATATGTGATGCAAGTATGTATACAGTACACTGCCTCACTACATCCTACATCCTACACTCAAACATTGCTTGGAAACAGGTTTCTGTTTTATTTAGGAATAAGTAAAACATCTTCAAGTAGTATTATCTTATTCAGAAGGTAGGATTTGATTATCCACGGATAGTGGCAGTGGTGCTCGATTTTGATATGAGCAACCTAAAAAGTATGTAGGTGGCTGTAGTTTACATTTTCACATTTTTACTTTCACAAGGTTATGTGAAAATATATACATTTCCAGTTCTCTCAATATTTGAATGTCATTCTATTAAAACGGAAATGCTGTGAAAAATAA

Function

NR:

description
protein YIPF6-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22943 YIPF6; protein YIPF6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623209.2 True 1741 mRNA 0.41 7 26731451 26739037

Neighbor

gene id symbol gene type direction distance location
stard8 LOC106567782 coding downstream 13799 26674978 ~ 26717652 (-)
c12hxorf56 cssa13hxorf56 coding downstream 85550 26639706 ~ 26645901 (-)
fam155b LOC106567779 coding downstream 467095 26215919 ~ 26264356 (-)
LOC110537277 LOC106567777 coding downstream 521260 26145977 ~ 26210191 (-)
wnt11f2 LOC106568050 coding downstream 593088 26135796 ~ 26138363 (-)
ar-alpha ar-alpha coding upstream 70316 26809353 ~ 26863253 (-)
LOC110537288 NA coding upstream 146996 26886033 ~ 26888305 (-)
LOC110537289 NA coding upstream 156728 26895765 ~ 26896913 (-)
LOC110537292 LOC106567791 coding upstream 192726 26931763 ~ 26955057 (-)
LOC110537293 LOC106567790 coding upstream 224936 26963973 ~ 26971550 (-)
G1054685 NA non-coding downstream 307556 26416907 ~ 26423895 (-)
G1054684 NA non-coding downstream 314585 26412487 ~ 26416866 (-)
G1054509 NA non-coding downstream 556165 26175049 ~ 26175286 (-)
G1054490 NA non-coding downstream 573930 26129084 ~ 26157521 (-)
LOC110537274 cxb1 non-coding downstream 618124 26109701 ~ 26113353 (-)
G1054885 NA non-coding upstream 2652 26741689 ~ 26741938 (-)
G1054914 NA non-coding upstream 40793 26779830 ~ 26786466 (-)
G1054920 LOC106567784 non-coding upstream 53104 26792141 ~ 26792628 (-)
G1054951 NA non-coding upstream 131627 26870664 ~ 26871675 (-)
G1054957 LOC106567786 non-coding upstream 142685 26881722 ~ 26883442 (-)
G1054232 NA other downstream 1072446 25657269 ~ 25659005 (-)
G1054211 NA other downstream 1106814 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 2123631 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 2176451 24554697 ~ 24555000 (-)
G1050429 NA other downstream 3487181 23243637 ~ 23244270 (-)
G1055010 NA other upstream 241746 26980783 ~ 26982355 (-)
G1055199 NA other upstream 406173 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1238989 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1437349 28176386 ~ 28177073 (-)
G1057600 NA other upstream 1702232 28441269 ~ 28441695 (-)

Expression


Co-expression Network