ar-alpha (ar-alpha)


Basic Information

Item Value
gene id ar-alpha
gene name ar-alpha
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26809353 ~ 26863253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936670.1
cgttccaattttctggaagcttgcttcagagctcgggtattttctgtgtaccagggagctacaATAATGCTATAGGTTAGAAATGTATGAAAATGAACCATCAACATAGCAATGCTGCACAACCACAATATTTTGCCTTACAATATTAATCAGACTAAAATGGATCACATAATAGCTACATTAACCATCATTTTCTCATCTCACTTTAATAGGAATGTAGTAGGATATGTTTTTCACCATTTTCAATGACTGTTCATGCTTAGATCTACCAATCAGGTGCACTCCAGCTGTCCTTGTCATGCACACTCCTCGTGTCTTGATAGAAACATCTTAATTCTCTTTACAAACTGCAAACATATCATGCTTATCACATTTCCATGGCTTGACATAAGGTAATTGACCCCCAGATTCACAAAGATATGTATTTTAACCACTAACCTGTCGATAAAAGTTTATGTGAGAAGCTGAGCCATCAAGTCAATTGATTAAGGCATAATTCTAATGATGTCATATACAATTTTCaaacattcagtcagtcagtcagttaatgtTTTGCTAACATTATAAAAGCAATATGAACTAGAGGAGACAATGGCCTGTGCTTGAACGTTTATTTGATTGGATTAAAAGTCATTAGTTTACAGTGTGTTAGTGTCTTCCCAACCGTCTCCCCTGTAGCTTCTCCCAGGCTAACACCCAAGACTTGAAACCTATGCTGTCATTTAGTCACTAGATGGGTTAAGAAAAGGACATATGTTTGGACCCTTAAATAACTCAACTCTACAACCAAAAAAACACTTCCTGGTCCGTTTTTTACATACATCGCTCATAACCACTTTTTGTTGATAACTCTGCGAAACATGGTGGGACTAGGCTGTTTCTTTGCAGTGAGCTCATCCTCCACATTAGGAACGTGCTGACTTGACTACACCCTTCTAGCTTCTGTGTTATCTGAGAAAATGGGCGTGTTACTTTCGCCACGTGTTACTTTGGTCCAGGCTCTCCCTGACAAAGGACATCCGCTTTGATTCAGTAGAATTCTGTGGTTACAAGTCTTTGACAGTTAGGCTGAACGGTAATTTCAGAGGAGTAAGATTCGTTCCAATATAAAATTACGTACTTTTTTAATCCTTGATGATTTTAACAATACAATTTATAAGTGGAGATGTTTTGCCTAATAGAGTTTTATGAATAGTCAAAATGGTCAGAACCTGTCTGAAATACAATTATTCAGCTTTTCTGATCATTTCTGTTTACCCCTGCCTTGCCATGCATGCCCTATACATTCACATTAATACGCCATGTTGACATCCACAGGATATTCCATCAACTTATTAATGTCCTGCAGTATTGCCACCTATCCTAAATGCACTTCTCATTTTGGAATTCCAAGAATTCTAACTATTTCCCTGAAATGTTTATTGCAAAAGTGGATAacgtctacaattttttttctgaggtctttgctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaagGTTTGAGGGTGGCAGCGACCACATGTACCCCATGGAGTTCTTCTTCCCGCCCCAGAGGACCTGTCTGATCTGTGCAGAAGAGGCATCCGGCTGCCACTATGGAGCACTCACCTGTGGCAGCTGCAAAGTGTTCTTCAAGAGAGCCGCAGAAGGGAAACAGAAATACCTGTGTGCCAGCAGAAATGACTGCACCATCGATAAGCTGAGAAGGAAGAACTGCCCATCATGTCGACTGCGGAGGTGTTTTGAAGCTGGGATGACCCTCGGAACACGTAAACTAAAGAAGATTGTACAGCTGAAGAGTCCGGAGGAGGATCTTCCCACCCAAGGCCCCACTGATACCATCCAGGGAGTCTCTCCCCAATCCGGCCTGAGCTTCCATTCCCAGCTGGTGTTCCTTAACATCTTGGAATCCATTGAGCCAGAGGTGGTACATGCGGGACATGACCAATGCCAGCCTGACTCAGCTGCAGCGCTGCTCACCAGCCTTAACGAACTCGGGGAGCGCCAACTTGTCAAAGTGGTCAAGTGGGCCAAAGGCTTGCCAGgttttcggAATCTGCATGTGGATGACCAGATGACAGTCATCCAGCATTCATGGATGGGGGTGATGGTGTTCGGCTTGGGATGGAGGTCCTACAAGAATGCCAACGGCAGAATGCTCTATTTCGCCCCGGACCTTGTTTTCAATGACCATCGGATGCACATCTCCAGCATGTTCGATCACTGCATACGGATGAGACAACTCTCCCAGGAGTTTGTCCTGCTGCAAGTCACTCAGGAAGAGTTCCTCTGCATGAAGGCCCTGCTCCTCTTCAgcatcaTTCCAGTGGACGGTCTTAAGAGTCAGAAGTACTTTGATGAGTTGCGGCTGACCTACATCAATGAACTTGGTCGCGTCATTAACTATGGAAGGAAGTCCAACTGCTCTCAGAGGTTGTATCAACTCACCCGTCTCATGGATTCCCTCCAACCGGTTGTGAGGAAACTCCAGCAGTTTACATTTGATCTGTTTGTCCAGGCCCAGTCTCTGCCCACCAAGGTCAACTTTCCAGAGATGATTGCAGAGATAATCTCAGTACATTTGCCAAAGATCCTGGCAGGCCTGGCCAAACCAATCCTGTTCCACAAGTAGCAGGATTTGCCATCAtactgagaaaaatccaatccaagCTGCCTATATACTTCTGCCAAGGCTCTGTAGTGTTTCCCttgtaatgttctctctctccctttttttaTATCTAATAGCTCAATGTTCCATTTCTGAAATCATTGTATCATTACAGTAGTTTAGCCGCTTATCAGACATAATTGAGATAATTTTCTCAGAAGGGCAGCAAGGTTTTAGCATTTATTTCAAGTTGCAAGGTGTCACCTTGTTGACAGCCCAATCTGTCCTGTATTTcaagaaaaaaaatacacaagACTAGTAGTTTTATGTCAAATGTA
>XM_021622396.2
tgaatgagtaagtgtgtctaaacttttgactggtactgtttatatacACACATGTATTTTGAATTACGTTCTGTAGGCCAACTGGCCTTaatccaaatatatttattttgtcaTAAAGGAATGCTGCCAAACTCACAGGCTGACGGCAAAAAGCGCTCAAGGACATTGGAAGATAACTTTGTCCCTGCGCAAACTTGCAGCAATCCAAACATTCTTAAAAAACAAGCATTAATTGCTGTTCTACCGGGGTGTGTTCAGTTGTCTGACGAGTTTTTTGGATGCATCACTCTTTTGTAGGCTTGCACCTTTATGGATATTAAACGTTAGCCTACTAGAGGAGTTTCATGATTGAAACAGGCACCGCTTCCCTCCGGTTACGCATTTGCCAGATTGGACACAGACAACAGGGAAAAATAGCCACGATTATAGTCCATCGACTTCAGAACATCACATTTAATTTTCGCCTTCATGGATGGTTTGAGGGTGGCAGCGACCACATGTACCCCATGGAGTTCTTCTTCCCGCCCCAGAGGACCTGTCTGATCTGTGCAGAAGAGGCATCCGGCTGCCACTATGGAGCACTCACCTGTGGCAGCTGCAAAGTGTTCTTCAAGAGAGCCGCAGAAGGGAAACAGAAATACCTGTGTGCCAGCAGAAATGACTGCACCATCGATAAGCTGAGAAGGAAGAACTGCCCATCATGTCGACTGCGGAGGTGTTTTGAAGCTGGGATGACCCTCGGAACACGTAAACTAAAGAAGATTGTACAGCTGAAGAGTCCGGAGGAGGATCTTCCCACCCAAGGCCCCACTGATACCATCCAGGGAGTCTCTCCCCAATCCGGCCTGAGCTTCCATTCCCAGCTGGTGTTCCTTAACATCTTGGAATCCATTGAGCCAGAGGTGGTACATGCGGGACATGACCAATGCCAGCCTGACTCAGCTGCAGCGCTGCTCACCAGCCTTAACGAACTCGGGGAGCGCCAACTTGTCAAAGTGGTCAAGTGGGCCAAAGGCTTGCCAGgttttcggAATCTGCATGTGGATGACCAGATGACAGTCATCCAGCATTCATGGATGGGGGTGATGGTGTTCGGCTTGGGATGGAGGTCCTACAAGAATGCCAACGGCAGAATGCTCTATTTCGCCCCGGACCTTGTTTTCAATGACCATCGGATGCACATCTCCAGCATGTTCGATCACTGCATACGGATGAGACAACTCTCCCAGGAGTTTGTCCTGCTGCAAGTCACTCAGGAAGAGTTCCTCTGCATGAAGGCCCTGCTCCTCTTCAgcatcaTTCCAGTGGACGGTCTTAAGAGTCAGAAGTACTTTGATGAGTTGCGGCTGACCTACATCAATGAACTTGGTCGCGTCATTAACTATGGAAGGAAGTCCAACTGCTCTCAGAGGTTGTATCAACTCACCCGTCTCATGGATTCCCTCCAACCGGTTGTGAGGAAACTCCAGCAGTTTACATTTGATCTGTTTGTCCAGGCCCAGTCTCTGCCCACCAAGGTCAACTTTCCAGAGATGATTGCAGAGATAATCTCAGTACATTTGCCAAAGATCCTGGCAGGCCTGGCCAAACCAATCCTGTTCCACAAGTAGCAGGATTTGCCATCAtactgagaaaaatccaatccaagCTGCCTATATACTTCTGCCAAGGCTCTGTAGTGTTTCCCttgtaatgttctctctctccctttttttaTATCTAATAGCTCAATGTTCCATTTCTGAAATCATTGTATCATTACAGTAGTTTAGCCGCTTATCAGACATAATTGAGATAATTTTCTCAGAAGGGCAGCAAGGTTTTAGCATTTATTTCAAGTTGCAAGGTGTCACCTTGTTGACAGCCCAATCTGTCCTGTATTTcaagaaaaaaaatacacaagACTAGTAGTTTTATGTCAAATGTA
>NM_001124184.1
ATGGAGATTCCGGTTGGATTAGGGGGAGTTTGTGACTCCACAAACCTAGTTTTTCGCGGACCTTTCCAAAACGTTTTCCACAACGTGCAAGCACTGCCGAGTAACACGACTGTCACTGAAAGCTTGGACTTTTGTAGTTCAAAGTTCAGTTTCTTGCAGAATAAACAACCCTGGGAGATGCGCCAAACGAGCCGGCAATCATCCCGAAAAGAAATATGGTCAGGAACGGCTCGCAATTCTGATATTGAAGTGAGGGAAGATGACAGCGTTGGTTTTTCCAGAACACTCGAATCAGTGGCATGTCGTATTCATTTTGCCAAAAGCTCAAAAGGGAACAAAGCCGGGTTTTCCTCTTTGAACGAATCAGACAATCCAAACGCGAATGAATATGGATCGTGTCGCTCTGGACAGCAAGTCTCCAACACGGAACAACAGTCCTGTCAACCCTCTGTGTCCCATCACGGAAATGAGTTAAATCATAACAGTGAGGCCTGTGTGGCTAGCAGTTGCTCCAGTTCTGCCTGCAGCACCATCTCAAAAACGGCGAGGGAGCTCTGCAACGCTGTCTCTGTGTCACTGGGATTGACCATGGACGCAAATGAGATGACTGACCTGGGACCTAATCACGCACCATCCAGCGTAAATCACCAAAGTCAAGGAAACTATTTGTTTGAGGTGCCTCTATTGAAATGTTCTGGAGCTGGAGAAAACGTCTCCATAACAGAATACACATGCCCCAGTGAGCGCAATGCCAAGCCACTACAAAGTGATAAACAACTAGTTGAGATGTTTCAACGTTCCCCTGCAAACAACCTTACAGAAAAAGTGGCGACCATACAGCACCTTAGCTCCGGACATCCATCCACAGATAAACAGGAGTTTAGACTGAATGAAAACAGGGATGACCCGACTTCAAAAGAAACAGATCATTTTCTGAATACAGGAGCTCGCTCAGCGTCTTATCATTTTGACCAACTGTTGCCAGCACACTTGGCACACTTCAGTCAAACCGAAACAGACAGAAACTCTTCTCATGTGTTCTACAAACCCCCAGCACATGTCGGTGAAACTGGAGAGACTATGGAGGACAAATATGCTGACTACTTACAACAACAGTACAGTGTCAAGATAAAATCTGAGGCCTTTAATAGGCATAATGAACTGCCGGAGTCATGGGACTTTCAGTACAGGTATAATGACAATGACAATACACAATATGGATTGAATTCATACATTGCGGGACCGGACACTGCGTTAATTTGTAACCCTCATGAATATGAGAGGGGTGGTGGACTCGTGCGTAGAGAGCGGCCAACTCCTGAGCAGTGGTACCCGGGCGAGATGCTAGGGAGGATGCCCTATCCCAACTCACCATGCATAAAGAATGAGGTTGGTGACAGTCTGGATGTCTCTTACACAGATGCCAGGTTTGAGGGTGGCAGCGACCACATGTACCCCATGGAGTTCTTCTTCCCGCCCCAGAGGACCTGTCTGATCTGTGCAGAAGAGGCATCCGGCTGCCACTATGGAGCACTCACCTGTGGCAGCTGCAAAGTGTTCTTCAAGAGAGCCGCAGAAGGGAAACAGAAATACCTGTGTGCCAGCAGAAATGACTGCACCATCGATAAGCTGAGAAGGAAGAACTGCCCATCATGTCGACTGCGGAGGTGTTTTGAAGCTGGGATGACCCTCGGAACACGTAAACTAAAGAAGATTGTACAGCTGAAGAGTCCGGAGGAGGATCTTCCCACCCAAGGCCCCACTGATACCATCCAGGGAGTCTCTCCCCAATCCGGCCTGAGCTTCCATTCCCAGCTGGTGTTCCTTAACATCTTGGAATCCATTGAGCCAGAGGTGGTACATGCGGGACATGACCAATGCCAGCCTGACTCAGCTGCAGCGCTGCTCACCAGCCTTAACGAACTCGGGGAGCGCCAACTTGTCAAAGTGGTCAAGTGGGCCAAAGGCTTGCCAGgttttcggAATCTGCATGTGGATGACCAGATGACAGTCATCCAGCATTCATGGATGGGGGTGATGGTGTTCGGCTTGGGATGGAGGTCCTACAAGAATGCCAACGGCAGAATGCTCTATTTCGCCCCGGACCTTGTTTTCAATGACCATCGGATGCACATCTCCAGCATGTTCGATCACTGCATACGGATGAGACAACTCTCCCAGGAGTTTGTCCTGCTGCAAGTCACTCAGGAAGAGTTCCTCTGCATGAAGGCCCTGCTCCTCTTCAgcatcaTTCCAGTGGACGGTCTTAAGAGTCAGAAGTACTTTGATGAGTTGCGGCTGACCTACATCAATGAACTTGGTCGCGTCATTAACTATGGAAGGAAGTCCAACTGCTCTCAGAGGTTGTATCAACTCACCCGTCTCATGGATTCCCTCCAACCGGTTGTGAGGAAACTCCAGCAGTTTACATTTGATCTGTTTGTCCAGGCCCAGTCTCTGCCCACCAAGGTCAACTTTCCAGAGATGATTGCAGAGATAATCTCAGTACATTTGCCAAAGATCCTGGCAGGCCTGGCCAAACCAATCCTGTTCCACAAGTAG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08557 AR, NR3C4; androgen receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936670.1 False 2972 mRNA 0.43 8 26809353 26853195
XM_021622396.2 False 1927 mRNA 0.47 8 26809353 26863253
NM_001124184.1 True 2562 mRNA 0.49 10 26809670 26862407

Neighbor

gene id symbol gene type direction distance location
LOC110537285 LOC106567783 coding downstream 70316 26731451 ~ 26739037 (-)
stard8 LOC106567782 coding downstream 91701 26674978 ~ 26717652 (-)
c12hxorf56 cssa13hxorf56 coding downstream 163452 26639706 ~ 26645901 (-)
fam155b LOC106567779 coding downstream 544997 26215919 ~ 26264356 (-)
LOC110537277 LOC106567777 coding downstream 599162 26145977 ~ 26210191 (-)
LOC110537288 NA coding upstream 22780 26886033 ~ 26888305 (-)
LOC110537289 NA coding upstream 32512 26895765 ~ 26896913 (-)
LOC110537292 LOC106567791 coding upstream 68510 26931763 ~ 26955057 (-)
LOC110537293 LOC106567790 coding upstream 100720 26963973 ~ 26971550 (-)
shisa2a LOC106567793 coding upstream 109238 26972491 ~ 26973687 (-)
G1054920 LOC106567784 non-coding downstream 16725 26792141 ~ 26792628 (-)
G1054914 NA non-coding downstream 22887 26779830 ~ 26786466 (-)
G1054885 NA non-coding downstream 67415 26741689 ~ 26741938 (-)
G1054685 NA non-coding downstream 385458 26416907 ~ 26423895 (-)
G1054684 NA non-coding downstream 392487 26412487 ~ 26416866 (-)
G1054951 NA non-coding upstream 7411 26870664 ~ 26871675 (-)
G1054957 LOC106567786 non-coding upstream 18469 26881722 ~ 26883442 (-)
G1055017 LOC106567789 non-coding upstream 128353 26991606 ~ 26998383 (-)
G1055037 NA non-coding upstream 158147 27021400 ~ 27023457 (-)
G1054232 NA other downstream 1150348 25657269 ~ 25659005 (-)
G1054211 NA other downstream 1184716 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 2201533 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 2254353 24554697 ~ 24555000 (-)
G1050429 NA other downstream 3565083 23243637 ~ 23244270 (-)
G1055010 NA other upstream 117530 26980783 ~ 26982355 (-)
G1055199 NA other upstream 281957 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1114773 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1313133 28176386 ~ 28177073 (-)
G1057600 NA other upstream 1578016 28441269 ~ 28441695 (-)

Expression


Co-expression Network