LOC110537288


Basic Information

Item Value
gene id LOC110537288
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 26886033 ~ 26888305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475596.2
tatgacgacacaccaaacaaatgtgtttgatggatcacgGAAAAAGAGCAGGAATAGATTTTTGTAGTCTACAGTCCAAGTTATGTCTTCCAAAAGTGCGAATGCTGTCGGGATCCAAAGATTATTCAACTTGAATTAAACAATGATTTCAGTTAAACACATTTTCTTTGCAGGTAGTTATGCATCCGATGAGGCAGCGGATATCAATGTTTTGTGGCATGATTTGGGTGACGGCCTCgtgtttctctctacctcatgCCATTTATCAGAAGCTGCTGTGGTTTGACTTTGGAAAGGTTCGAATGGTGTGTCTGCCCAGCTTTCCACAGCCGTCAGATGTGTTTTGGAAATACTTGGACCTGGCCACGTTTTTCCTCCTCTACTTGTTGCCACTTTCTATCATCTCCGTAGCTTACATTATCGTTGCTAAGAAGCTATGGATGCGTAATTCTATAGGGGATGTCGCCCACAGACAAAGGAAGAAGATGACTCTGAAGATGCTGATGTTGGTGGTGGCTGTTTTTGCTATTGGCTGGTTCCCTTTAAACTGTTATGTGATTTTGGTGTCCAGCCAGGCCATTAACACTAACAATGCTATCTACTTCACCTTCCATTGGTTTGCCATGAGTAGCACCTGTTACAATCCTTGCCTTTCATTTGGCGTTCCAAGAGGGCAGTACATCCATGCTGAGGTTGTCATCTCTATAACTACATAGATTATGTATAAAGATATAGAGGTTAATGCAGAGGTTAACATCTTTCCATAAGATTCTGTCAAGGTTGCACCTATCTCCATTCAGTTGATGTAATTTATAATTAGATCTAGGTCAACCTATAATATGAAATATTAGAGAATAACAGAAGTCTATTTCTTTAAGgggaggtaaaaaataaataataaaatggtGAAGTAATAAAATATTTTGTAAATAATCAGGAAAGAGAATATTAGTGAAACACTTGTATGGATACCATAATGGTAAATAAAACTAATGTGATTTAGCATCTTATGTGTTTTTTCAAAACATGATAGCTTACACAATtcaagtaaaaaaatatttgtttcaaTGTCTATCGTTCTTTTATAGTATAATGTTTGTAAATGTGTAACTGTGCACAGAGTAAACTCGAAACATTCACAAtcattcattagtgcacactatTGCATAGGGCTATTCAATTCTGTCCCTCAAGAGATGTACAGTAGTACTGCTGTTTTTCTTTCCTCCCTGGTAGTTAGTTGATCAGTGTATGTCATTGACCTTAGACTTGACCCACAATGTATTCTCAGGGCTGATTCATTCAGTCCCTGATCAGATGGAGGAAGTAAAACCACCAGTTATGTGTGTGGCCCTCAAGGATTTTTCCTGGCCCTGCCATAGCATTATGCAATTAGTCAGATCTGATGAGCCAAGATTAAGCAAGTGTGAATACTTTTCACTGAATTACCTTTAAAGGAGTACCCATAATGTCATGTCATGATACTTGAAATCATTCAAATAATCTGAGCAGAACTATCTACCAATATAATTGCTTtcccataaaaaaaatattataattgcTTAATTCGATAATTTCATGAATTTATATAATTAGATATATAGATGATCATTAAAAATCACAAAGTTATTGAATGGCTTGGATTGACCAATCAGCATGCCGGATAGAAAAATGTACTTTTCTCACGACACCATCTGCTGGTTGAATCATAGACAATCTTCATGTATAAAATTGGTTGAATATACACTATGAAATAGTGTCAGTGCCAGGGGAATCAGATGTTCTTATGTGTGAGTATGTCATTTGTATTTAAactaaatgtatttgtatttgagtgtttacccgcatttgtaacttgagtccgataattatctgtacaaaacagTTCATCTGATAATACTTGTGGAATATAAAAGTACTTGCTTGTTTTCCAGTTTTTTGAAATACTTTGCAAATAGAACGTATTTCTATTtgaaaactgaaa

Function

NR:

description
putative G-protein coupled receptor 83

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475596.2 True 1984 mRNA 0.36 2 26886033 26888305

Neighbor

gene id symbol gene type direction distance location
ar-alpha ar-alpha coding downstream 22780 26809353 ~ 26863253 (-)
LOC110537285 LOC106567783 coding downstream 146996 26731451 ~ 26739037 (-)
stard8 LOC106567782 coding downstream 168381 26674978 ~ 26717652 (-)
c12hxorf56 cssa13hxorf56 coding downstream 240132 26639706 ~ 26645901 (-)
fam155b LOC106567779 coding downstream 621677 26215919 ~ 26264356 (-)
LOC110537289 NA coding upstream 7460 26895765 ~ 26896913 (-)
LOC110537292 LOC106567791 coding upstream 43458 26931763 ~ 26955057 (-)
LOC110537293 LOC106567790 coding upstream 75668 26963973 ~ 26971550 (-)
shisa2a LOC106567793 coding upstream 84186 26972491 ~ 26973687 (-)
gab3 LOC106567798 coding upstream 138259 27026564 ~ 27054832 (-)
G1054957 LOC106567786 non-coding downstream 2591 26881722 ~ 26883442 (-)
G1054951 NA non-coding downstream 14358 26870664 ~ 26871675 (-)
G1054920 LOC106567784 non-coding downstream 93405 26792141 ~ 26792628 (-)
G1054914 NA non-coding downstream 99567 26779830 ~ 26786466 (-)
G1054885 NA non-coding downstream 144095 26741689 ~ 26741938 (-)
G1055017 LOC106567789 non-coding upstream 103301 26991606 ~ 26998383 (-)
G1055037 NA non-coding upstream 133095 27021400 ~ 27023457 (-)
G1055038 NA non-coding upstream 135684 27023989 ~ 27024209 (-)
G1055039 NA non-coding upstream 135932 27024237 ~ 27024438 (-)
G1054232 NA other downstream 1227028 25657269 ~ 25659005 (-)
G1054211 NA other downstream 1261396 25623879 ~ 25624637 (-)
LOC118936414 NA other downstream 2278213 24600309 ~ 24607820 (-)
G1052040 acaca other downstream 2331033 24554697 ~ 24555000 (-)
G1050429 NA other downstream 3641763 23243637 ~ 23244270 (-)
G1055010 NA other upstream 92478 26980783 ~ 26982355 (-)
G1055199 NA other upstream 256905 27145210 ~ 27145493 (-)
G1056225 NA other upstream 1089721 27978026 ~ 27978436 (-)
G1057449 LOC106567827 other upstream 1288081 28176386 ~ 28177073 (-)
G1057600 NA other upstream 1552964 28441269 ~ 28441695 (-)

Expression


Co-expression Network