LOC110537324 (LOC106567819)


Basic Information

Item Value
gene id LOC110537324
gene name LOC106567819
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 27834303 ~ 27849918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937308.1
GTGATTGTGATATAGAtcattgctgagagaggaggtTGATGGCTGAGGGGTATAGCATGTTGGTCGTTGTAATGGACCTGATCTACTGGCGGGATGTGGGGAAGACAGGGCTTGTGGTCACAGGGCTGGTGATAGGCCTGGCTAGCCTGTTCCAGTTCAGTTCCGTCACCATGCTGTCCTACCTGTGTATCTCCATCATGTGTCTCACCTTCCCCCTACGCCTCTACTACAAACTCCTAGAGCTGATACGGAAGATCCCTGAAGGAGTGCACCCCTTTCAGTCTTATATAGGAGACGACAGCTCTCTGACAGATGAGGAGACCgtgttggtggtggaggaggtcgTGCTAATGATGGCCTTCGCCATCACAGAGATCAAACGCCTGCTCTTCATCGACAGCATCATGGACTCCATCAAGTTTGTGGTGCTGCTGTACGTGTTGACCTATATGGGCATCACGACCAATGGTCTGACCCTGGTGATAGTTGGTGTCATCTgtgttttctctcttcctctgttctaCAAACAAATGCAGGGGCGAATGAAAAGGATTAGCAAAGCGGTCAGAGGCctcctgaggaaaatcaaaaacTTGTTTAAGATGTTGTACAGTAAACTGAGACCCTCTCCTGCGACTACATCTGCCACAACCCCCACTCCCACCCCGGCCCCAAAACACAAACTCAAGTCAAAgtgatgagacagagagagggggatctaTGGGAAAAGAGGGGGGTCACTCATACTTCTTATCTTATCATGCCACCTGGGATCAGGGGCTGGGCAACTCTGACGAGGGGAGTTTGGGAGGCTACTGGTGCTTTTATATTTCCATATTTTGTGGTGTCTGTGAATGGAAGCAAGATTTCAAATCCAGTGTTTGGTCTTGGTACATATAGGCCTACTGAAGATGTTTACAGACAAATGCATCATTCTTCGTCACAAATCTTGTTCTCGAGGCACTAGCtgacagccacaaagtcatagaatcagattttaaacctaaccttcaccacactgctaaccctaatgcctaacactaaccttaaattaagaccaaaaagtaaatttttgttttcattcatttttaaaataaattatagcCAATTACGACTTTACAGCTGGCCTATCTAAGAGGAAATCGCTCACTTATGCCTCCAGGTCAAGACAGGAggatttttaaattttttatctAAAAGACAACAAGCTTGCCTTGTCATGAGtcaaatatttgtttaacacatgcCATCTTAAGACAACACAGGGTGAATACTGGCTATCTAACCACATGCCCAAAACTGTAATTGACTTTGAGAGTACACTCAAAGTGTGAGAATGGGTACTTCTCAAAGTAAGTGTGAGAATGGGTACTTCTCAAAGTAAGTGTGAGAATGGGTGAATGGGTACTTACTCAAAAGTGGCAAACTTTTGGGGGGATTTTTGTTTAAATTGTTGAATAAATGTTTCACAATTTCTAAA
>XM_021623270.2
CTATACTGCTGACGGGGCTGGTAGAGCCAAAAAAAGATCCTAGCGAGGACCATAGGAGTGCAGAGGGTTCTAGGAGAGCAGCGAGCAGCAAGAGGAAGCGAGTGGGGTGGGTTGTTTGCACAGCAATCAGCTGCCAAAATGGCCATCAAAGTAATGGACCTGATCTACTGGCGGGATGTGGGGAAGACAGGGCTTGTGGTCACAGGGCTGGTGATAGGCCTGGCTAGCCTGTTCCAGTTCAGTTCCGTCACCATGCTGTCCTACCTGTGTATCTCCATCATGTGTCTCACCTTCCCCCTACGCCTCTACTACAAACTCCTAGAGCTGATACGGAAGATCCCTGAAGGAGTGCACCCCTTTCAGTCTTATATAGGAGACGACAGCTCTCTGACAGATGAGGAGACCgtgttggtggtggaggaggtcgTGCTAATGATGGCCTTCGCCATCACAGAGATCAAACGCCTGCTCTTCATCGACAGCATCATGGACTCCATCAAGTTTGTGGTGCTGCTGTACGTGTTGACCTATATGGGCATCACGACCAATGGTCTGACCCTGGTGATAGTTGGTGTCATCTgtgttttctctcttcctctgttctaCAAACAAATGCAGGGGCGAATGAAAAGGATTAGCAAAGCGGTCAGAGGCctcctgaggaaaatcaaaaacTTGTTTAAGATGTTGTACAGTAAACTGAGACCCTCTCCTGCGACTACATCTGCCACAACCCCCACTCCCACCCCGGCCCCAAAACACAAACTCAAGTCAAAgtgatgagacagagagagggggatctaTGGGAAAAGAGGGGGGTCACTCATACTTCTTATCTTATCATGCCACCTGGGATCAGGGGCTGGGCAACTCTGACGAGGGGAGTTTGGGAGGCTACTGGTGCTTTTATATTTCCATATTTTGTGGTGTCTGTGAATGGAAGCAAGATTTCAAATCCAGTGTTTGGTCTTGGTACATATAGGCCTACTGAAGATGTTTACAGACAAATGCATCATTCTTCGTCACAAATCTTGTTCTCGAGGCACTAGCtgacagccacaaagtcatagaatcagattttaaacctaaccttcaccacactgctaaccctaatgcctaacactaaccttaaattaagaccaaaaagtaaatttttgttttcattcatttttaaaataaattatagcCAATTACGACTTTACAGCTGGCCTATCTAAGAGGAAATCGCTCACTTATGCCTCCAGGTCAAGACAGGAggatttttaaattttttatctAAAAGACAACAAGCTTGCCTTGTCATGAGtcaaatatttgtttaacacatgcCATCTTAAGACAACACAGGGTGAATACTGGCTATCTAACCACATGCCCAAAACTGTAATTGACTTTGAGAGTACACTCAAAGTGTGAGAATGGGTACTTCTCAAAGTAAGTGTGAGAATGGGTACTTCTCAAAGTAAGTGTGAGAATGGGTGAATGGGTACTTACTCAAAAGTGGCAAACTTTTGGGGGGATTTTTGTTTAAATTGTTGAATAAATGTTTCACAATTTCTAAA

Function

NR:

description
reticulon-1-A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937308.1 False 1480 mRNA 0.44 7 27834303 27849918
XM_021623270.2 True 1562 mRNA 0.45 7 27838295 27849918

Neighbor

gene id symbol gene type direction distance location
LOC110539135 LOC106568036 coding upstream 17601 27812785 ~ 27816702 (+)
LOC110537321 LOC106567817 coding upstream 27495 27792240 ~ 27806808 (+)
LOC110537320 LOC106567815 coding upstream 44144 27785883 ~ 27790159 (+)
LOC110537318 LOC106568054 coding upstream 66820 27762712 ~ 27767483 (+)
LOC110537317 LOC106567814 coding upstream 87618 27739868 ~ 27746685 (+)
LOC110537325 LOC106567818 coding downstream 335 27850253 ~ 27858219 (+)
ucp2b ucp2b coding downstream 189283 28039201 ~ 28042491 (+)
rab6a rab6a coding downstream 212322 28062240 ~ 28088391 (+)
LOC110537331 LOC106567824 coding downstream 240505 28090423 ~ 28117403 (+)
LOC110537332 LOC106567825 coding downstream 300004 28149922 ~ 28162034 (+)
G1055620 NA non-coding upstream 10068 27821858 ~ 27824235 (+)
G1055582 NA non-coding upstream 62293 27761938 ~ 27772010 (+)
G1055566 NA non-coding upstream 117850 27716163 ~ 27716453 (+)
G1055560 NA non-coding upstream 132482 27701619 ~ 27701821 (+)
G1055638 NA non-coding downstream 3487 27853405 ~ 27895032 (+)
G1056203 NA non-coding downstream 116306 27966224 ~ 27966437 (+)
G1056204 NA non-coding downstream 119356 27969274 ~ 27969484 (+)
G1056232 NA non-coding downstream 134023 27983941 ~ 27984148 (+)
G1056282 NA non-coding downstream 185523 28035441 ~ 28035643 (+)
LOC110537316 LOC106567813 other upstream 96770 27724763 ~ 27737547 (+)
LOC110536832 LOC106567811 other upstream 122584 27711313 ~ 27715011 (+)
hmgn7 LOC106567806 other upstream 261758 27569334 ~ 27572548 (+)
G1055498 LOC106568053 other upstream 271632 27561371 ~ 27562671 (+)
G1056324 NA other downstream 262335 28112253 ~ 28157057 (+)
rnf214 LOC106567832 other downstream 375786 28222935 ~ 28230419 (+)
LOC110537361 LOC106603379 other downstream 1034022 28828372 ~ 28894230 (+)
G1056845 NA other downstream 1246154 29096072 ~ 29097636 (+)
LOC110537386 LOC106567871 other downstream 1848870 29698677 ~ 29726867 (+)

Expression

LOC110537324(LOC106567819) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110537324(LOC106567819) Expression in each Bioproject

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LOC110537324(LOC106567819) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network