LOC110537332 (LOC106567825)


Basic Information

Item Value
gene id LOC110537332
gene name LOC106567825
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 28149922 ~ 28162034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623282.2
CAGAACCTACTTTCACTGTATTTTGATCCTTCTAACATTAGACTGGAGTGGCTTGGGAATTCCCCAGGACAACAATTTTAGCAAGACGCCTTGACTTGAAACAGCTTAAGACGGTGACATTTATTTTACTCCTTAAATAACCTTTTACAATATTAACTTTATCAGTTAGAGTTTAGGTGCAGCGCCCTGCGCTGTTTTCTTAGCCTGGTCCTAGCACTTTAGCTTGCAAGCTAGCCAACTGCTACTGTCAAGCTGCCAGCTTGACAgcacagctaacgttagcttgttaCTTTTCAAGAGACAGTTTGTTATCAGGCTAGCTACTAAAAGTAAATATACACCAATTTTAACCAGCTGTTATTGCCATTATTGCAGaggaatctttaaaaaaaaaagtgcatagctagctagcaacggTATTCGTAATGGCTGGTATTCAGCCCAGGTGCGATTCTGGAAAGCCGCCTACACGGCCTGAACTTCACTTCGGTCTTGAAAAACACGACGCTCTGTGTACTTCTACACCGGAGGATTGGTGCGACAGTGGGCTAGATTGTCTGAGTGGAGCAGCGCTGAGTCTGGATGACCCCTTCAGCAACGAGGTATCCCAAACATGGGTGCCCGGGTCCCCTCCGTACACGACCTCCTACCCATCACTGGATGACACTGACAAGCGCCCCATGGACTGTAGTTCACCGGGGGGTGAAGAGAGGTTGGACTCGGCTATAGGGGACTCAATTACAGATGAGACTATGGGGAGTATATCACAGGGGCTGGGGACCATGCACCTGAATGAACCAGTTATCAGTGACACAGTGGATGACAGTGGGAGGCAAGCGTCACTGATCCCAGAGGAGGAAAGACGGAGAAGAGAGATATTCAACACACTGAACTTTGTGTCTGAGGATGGAGACACGGCTCTTCACTTGGCTCTTATCCACGAGCACTGGGCCTTTGTACAGTACCTTCTGGGGGTGATAGCACTGGACAGGAGCTGGGTGCCTTACCTGGACATCCAGAACCACTTGGGACAGACTGCCCTTCACCTGGCTGTCATAGTGGACCAGTCTCAGTTTGTGCGAGGGCTGCTGTGGGGTGCTGCGAGCGCTGAGCtccaggagaggggagggaacaCACCGCTGCACTTGGCTGTCAGGGAGCTGAGGCAGGACTGTGTACGAGAGATCACCTCCAACTGCCAGAGCACTGACTACCTGCATGTCACCAACTACTCAGgGGTGAGTGCACTGCATTTGGCAGTACAGAGGGGCAAAGAGGACATAATCAGCATGCTGATTGATGCAGGAGCCAATGTTAACCAGAGGGACCTGGGCTCAGGCCGCTCCCCtttacactgggccgtggagtcCCAGAGCCCCAGGCTGGTGCAGCTACTGCTGCAGGGGGGGGCCAATGTAGACCAGCCCTCCTATGCAGGCCACACGGCCCTCTACTGCGCCCTGCACAGGCCCAACAAGGAGGTACAGGCCCTGCTCAAGGCTAGAGGGGCCTCTGACACACAGGTCCGGGATGAAGAGGATgaggaagcagaggagagggagagtgaagatGAAGAGTTTGATGACGTTGTTATCAATGGACAACGAGTGCACTAACCATGAACATGGACACTAAGCCACATGGAGTCATGGCACTGCTGTTGGGCTAAGCTATAgatgtagattgtgtgtgtggttcgtgtatgtatgtgtgcctgTAAATTGTATATATCAAGGCTGCTGGGGAACTCCAGTTCTCAACCCAGTCAGGAAATAAGTTGTTTGAATTAGCTGATCACAGTTGTTCCTGCTTCAAATTAGTTCCCTTAAATTGTGCAGAGGGCAAGCTAATATTAGTTGGATCACATGGGTTTTAATGTCTGTCTGGAGCTAAGCTTGCCAAGACTAGTGTTGCCTACTCTAAGCATGGGAGAATGATCCAACCATGGACTCAGCTGTGTGCTGTCAAACTCAAATCATGGCCCCGCCCACTAGTGGCCACATCTCTTGTTCATGTCCCACCCCACCGTTCGCTCACATTCAACTCCACTGCTCAGATGGGCTGCTGATACCCATCTTCAGGGTAATCTATGGTGCAAAGTCAGAAAAGATGTCTAAATACCCAGTAACACATTGATACTGCAGTGTGCTGTAAAACAGACCAGTTggatttgatatatatatatttttttctttttagCTCTATAAGCTAAAGAATTGCAGCTCGATTAAGTTCTCAAATAACCCATACTGTATGTTTTAAATTCAAGCTATTGCTAAGGGGCAGATATAGCTGGCAATCCCCCTCTGTTTAAATAACCACTTGATCATGATTTTCTTGCCTCTGATGGTGATCTTTAGCTGCATggatttatttttcttttttttcccaaTGCTAATCGTGAAATGAGGCTATAAGAGATGTGGGTTTGGGATTAAAGTAGTTGGATTATCTGAGATGTTTGCATTATTAAAGGTTCAGGGTTAAGGGAAGATGTGAATGTACATCAGGTAGAGGTTAATGCATGCCAAGGTAAGTAGTTCATTTGGGATTGAAAGAGAAAGGAGGGGCAAACTCAACACATTGGTACTAAATCATCTTTGcttccagttgaaaaataaattataatttCACGTATTCGAGAACCTCTGCAAATCTACATGAATTGGTATTTGACCTATCGCATGGGTGACGTGATCCAACTATTTCAGTAATGGATCAATTCCTGAATAGGAGTGCTCTAACCAGGGCCTGATTGTCCCTGGAGTGATGTTGTCATTTAGTCCATTTTATGTACAGTTCACCAATTAAAGACGGAACTACAAGAAGCAAACACAAGGACCCACCCAGAACAAGGGTTGGAGATCCCTGGTCTAAAAGAATCTGGTGTATATTCGCTTTGTGCATTTTGATTATTTTGAAGGATTGACTGTTTATTTGACAGGCTAGGATGCCTCTGTGTTTGCTCATCAGAAGGAGCATGGTGTCTACATGATTATTGTAATTACaactaaaataaatacagtattaaGAGGC
>XM_021623283.2
CAGAACCTACTTTCACTGTATTTTGATCCTTCTAACATTAGACTGGAGTGGCTTGGGAATTCCCCAGGACAACAATTTTAGCAAGACGCCTTGACTTGAAACAGCTTAAGACGGTGACATTTATTTTACTCCTTAAATAACCTTTTACAATATTAACTTTATCAGTTAGAGTTTAGGTGCAGCGCCCTGCGCTGTTTTCTTAGCCTGGTCCTAGCACTTTAGCTTGCAAGCTAGCCAACTGCTACTGTCAAGCTGCCAGCTTGACAgcacagctaacgttagcttgttaCTTTTCAAGAGACAGTTTGTTATCAGGCTAGCTACTAAAAGTAAATATACACCAATTTTAACCAGCTGTTATTGCCATTATTGCAGaggaatctttaaaaaaaaaagtgcatagctagctagcaacggTATTCGTAATGGCTGGTATTCAGCCCAGGTGCGATTCTGGAAAGCCGCCTACACGGCCTGAACTTCACTTCGGTCTTGAAAAACACGACGCTCTGTGTACTTCTACACCGGAGGATTGGTGCGACAGTGGGCTAGATTGTCTGAGTGGAGCAGCGCTGAGTCTGGATGACCCCTTCAGCAACGAGGTATCCCAAACATGGGTGCCCGGGTCCCCTCCGTACACGACCTCCTACCCATCACTGGATGACACTGACAAGCGCCCCATGGACTGTAGTTCACCGGGGGGTGAAGAGAGGTTGGACTCGGCTATAGGGGACTCAATTACAGATGAGACTATGGGGAGTATATCACAGGGGCTGGGGACCATGCACCTGAATGAACCAGTTATCAGTGACACAGTGGATGACAGTGGGAGGCAAGCGTCACTGATCCCAGAGGAGGAAAGACGGAGAAGAGAGATATTCAACACACTGAACTTTGTGTCTGAGGATGGAGACACGGCTCTTCACTTGGCTCTTATCCACGAGCACTGGGCCTTTGTACAGTACCTTCTGGGGGTGATAGCACTGGACAGGAGCTGGGTGCCTTACCTGGACATCCAGAACCACTTGGGACAGACTGCCCTTCACCTGGCTGTCATAGTGGACCAGTCTCAGTTTGTGCGAGGGCTGCTGTGGGGTGCTGCGAGCGCTGAGCtccaggagaggggagggaacaCACCGCTGCACTTGGCTGTCAGGGAGCTGAGGCAGGACTGTGTACGAGAGATCACCTCCAACTGCCAGAGCACTGACTACCTGCATGTCACCAACTACTCAGgGGTGAGTGCACTGCATTTGGCAGTACAGAGGGGCAAAGAGGACATAATCAGCATGCTGATTGATGCAGGAGCCAATGTTAACCAGAGGGACCTGGGCTCAGGCCGCTCCCCtttacactgggccgtggagtcCCAGAGCCCCAGGCTGGTGCAGCTACTGCTGCAGGGGGGGGCCAATGTAGACCAGCCCTCCTATGCAGGCCACACGGCCCTCTACTGCGCCCTGCACAGGCCCAACAAGGAGGAAGAGTTTGATGACGTTGTTATCAATGGACAACGAGTGCACTAACCATGAACATGGACACTAAGCCACATGGAGTCATGGCACTGCTGTTGGGCTAAGCTATAgatgtagattgtgtgtgtggttcgtgtatgtatgtgtgcctgTAAATTGTATATATCAAGGCTGCTGGGGAACTCCAGTTCTCAACCCAGTCAGGAAATAAGTTGTTTGAATTAGCTGATCACAGTTGTTCCTGCTTCAAATTAGTTCCCTTAAATTGTGCAGAGGGCAAGCTAATATTAGTTGGATCACATGGGTTTTAATGTCTGTCTGGAGCTAAGCTTGCCAAGACTAGTGTTGCCTACTCTAAGCATGGGAGAATGATCCAACCATGGACTCAGCTGTGTGCTGTCAAACTCAAATCATGGCCCCGCCCACTAGTGGCCACATCTCTTGTTCATGTCCCACCCCACCGTTCGCTCACATTCAACTCCACTGCTCAGATGGGCTGCTGATACCCATCTTCAGGGTAATCTATGGTGCAAAGTCAGAAAAGATGTCTAAATACCCAGTAACACATTGATACTGCAGTGTGCTGTAAAACAGACCAGTTggatttgatatatatatatttttttctttttagCTCTATAAGCTAAAGAATTGCAGCTCGATTAAGTTCTCAAATAACCCATACTGTATGTTTTAAATTCAAGCTATTGCTAAGGGGCAGATATAGCTGGCAATCCCCCTCTGTTTAAATAACCACTTGATCATGATTTTCTTGCCTCTGATGGTGATCTTTAGCTGCATggatttatttttcttttttttcccaaTGCTAATCGTGAAATGAGGCTATAAGAGATGTGGGTTTGGGATTAAAGTAGTTGGATTATCTGAGATGTTTGCATTATTAAAGGTTCAGGGTTAAGGGAAGATGTGAATGTACATCAGGTAGAGGTTAATGCATGCCAAGGTAAGTAGTTCATTTGGGATTGAAAGAGAAAGGAGGGGCAAACTCAACACATTGGTACTAAATCATCTTTGcttccagttgaaaaataaattataatttCACGTATTCGAGAACCTCTGCAAATCTACATGAATTGGTATTTGACCTATCGCATGGGTGACGTGATCCAACTATTTCAGTAATGGATCAATTCCTGAATAGGAGTGCTCTAACCAGGGCCTGATTGTCCCTGGAGTGATGTTGTCATTTAGTCCATTTTATGTACAGTTCACCAATTAAAGACGGAACTACAAGAAGCAAACACAAGGACCCACCCAGAACAAGGGTTGGAGATCCCTGGTCTAAAAGAATCTGGTGTATATTCGCTTTGTGCATTTTGATTATTTTGAAGGATTGACTGTTTATTTGACAGGCTAGGATGCCTCTGTGTTTGCTCATCAGAAGGAGCATGGTGTCTACATGATTATTGTAATTACaactaaaataaatacagtattaaGAGGC

Function

NR:

description
NF-kappa-B inhibitor alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623282.2 False 3036 mRNA 0.46 6 28149922 28162034
XM_021623283.2 True 2946 mRNA 0.46 6 28149922 28162034

Neighbor

gene id symbol gene type direction distance location
LOC110537331 LOC106567824 coding upstream 32519 28090423 ~ 28117403 (+)
rab6a rab6a coding upstream 61531 28062240 ~ 28088391 (+)
ucp2b ucp2b coding upstream 107431 28039201 ~ 28042491 (+)
LOC110537325 LOC106567818 coding upstream 291703 27850253 ~ 27858219 (+)
LOC110537324 LOC106567819 coding upstream 300004 27834303 ~ 27849918 (+)
LOC110537334 LOC106567827 coding downstream 14058 28176092 ~ 28178670 (+)
LOC110537336 LOC106567830 coding downstream 24341 28186375 ~ 28190186 (+)
LOC110536835 NA coding downstream 29840 28191874 ~ 28195525 (+)
LOC110537338 LOC106567831 coding downstream 39282 28201316 ~ 28214296 (+)
rnf214 LOC106567832 coding downstream 60901 28222935 ~ 28230419 (+)
G1056299 NA non-coding upstream 3028 28128974 ~ 28146894 (+)
G1056302 NA non-coding upstream 81441 28068248 ~ 28068481 (+)
G1056285 NA non-coding upstream 111224 28038296 ~ 28038698 (+)
G1056284 NA non-coding upstream 112430 28037274 ~ 28037492 (+)
G1056282 NA non-coding upstream 114279 28035441 ~ 28035643 (+)
G1056357 NA non-coding downstream 30436 28192470 ~ 28192712 (+)
G1056358 NA non-coding downstream 30808 28192842 ~ 28193109 (+)
G1056371 NA non-coding downstream 69754 28231788 ~ 28232604 (+)
G1056370 LOC106567833 non-coding downstream 77378 28239412 ~ 28246732 (+)
LOC110537321 LOC106567817 other upstream 343318 27792240 ~ 27806808 (+)
LOC110537316 LOC106567813 other upstream 412389 27724763 ~ 27737547 (+)
LOC110536832 LOC106567811 other upstream 438203 27711313 ~ 27715011 (+)
hmgn7 LOC106567806 other upstream 577377 27569334 ~ 27572548 (+)
G1055498 LOC106568053 other upstream 587251 27561371 ~ 27562671 (+)
LOC110537361 LOC106603379 other downstream 721906 28828372 ~ 28894230 (+)
G1056845 NA other downstream 934038 29096072 ~ 29097636 (+)
LOC110537386 LOC106567871 other downstream 1536754 29698677 ~ 29726867 (+)
G1057271 NA other downstream 1736162 29898196 ~ 29898475 (+)

Expression

LOC110537332(LOC106567825) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110537332(LOC106567825) Expression in each Bioproject

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LOC110537332(LOC106567825) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network