LOC110537405


Basic Information

Item Value
gene id LOC110537405
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 29951555 ~ 29960420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475620.2
caagcagccatcatcatgaatcaagtcgacaatatactggcaaatccttttcataTGAAGAAAAATGATAGATAAAACgaatcggtgctcatcggccataagCATTGCACAAGTTGGatatcgcaaattcaacaatgagtggtttgaaaggaatcagtggctaactgcaagcattgcaaagcaatcactggactgctattcagtggagagggtgtgtggtccaagtctgggcttaaagaacaccctctgtgttttgTTAGACACGTAACTCTATTTACACAATATAGCatgggggtgtaaagccataacacatacgtttttccagcagcagactatgatcgataactTCAAAatccgcactgaagtctaacaaagcagcccccacaatctttttatcatcaatttctcatTGGGAGTGGAGACTGCGTTGCACGAGGATGCTGTCTTCGGCTTCCATGGCTCACGACATGCGACCATCATTGATTGCCATGCTCCTCTTGTTGTGCTCCTTCGACTCCGCTATCcgatgggggaggagaggcagaagaTGGCTCCCCTGGCAACACCGGTCAGTCGGATAACGACAAACGACAAGACATAGATGCATCCAACATGCGCGAACGCCGTCCACCCAACGGCGTAGAAAAGAAACTGGACATGTTTGGAGTTGAAGATTGAGGCCAGGTTTAGTATCCTAAAGTTCACTCCTTAACAGTACTGGATGAAAACACAGCAAGAAAACACTTGCTGGAAGAGTGTGGGACTGCTGTACCAATTGTCCACATTCAAAGTGTGTCCCTTGCCGAGATGAGGAGCCAGCATGGAGCCAGCATGGAACCAGACACCCCAAGCCCCTCATAATGTTGGATGTCAATGGTGGATCCTGTGTAAACTATAATGTCCTGGACAAATCCTGTCTTCACGTCGCACATAACAAAGCACTTGACCACAAACCTTTGCCTTTTGGGTGGAACGCCAGCCTACCCTTCCGTAACATCAGGGACTTATCAATGCATAGGTCCTTGTATGGCACAAAGACCCTACCAAATGCTAATGTCAAGCTGCTCCAAGGCATAGCGGTTGGTCTCCTCTAgtatgtctcccaccagctcctctgtcagaaacagcatgaagcactctgcctcagagGGAAATGGCAAGGGGCTTTGCAATCCAGACTGGGACTCATTAAAGCAAGCAGCAGGGCCAGGAAATGGCTGGcagccttccagctaccacagacCTCCTGTACATTATCCACTGTCAGTCTGCCTCCTTCAacaccagcatcttcaaagggaccTCGGGCTTCGTCAGGGGACAAGGGGTCatcagattcagggttctcaatggctagaaggttggggggcagctcctcattgtcactgtcagaatctgattcctgactttGTCAGAATTGTACAAAATCTTTCCgcatttgtgagttgtctccttttgaaagacattgctaatgctacagcttagctcactagctacATACAGAAAGAACAACACTGAATCgctcagagtgggagtgagaggttaCGTGATTGACTGCCGGCACGTGCCAATTGTATCGATACATCAttatcagaaaatgttttgtgtggtaattatttatttatatactgttttattcacgttttcaagtactggtgacaaatcatgcattccgattcttgcatagattgtaatggacacattatgtgtgtaaaatacttttatgaaggttgtactgattatgatgagctaagctaattccagctatgtgtggagccatgtttgttgaaATACAACGCATTCTGGGTTTCACGTAAACGTCTGTCGGACCAAGGATtttataacaaaatgaggtgaggGAGGGTTCACTTTTTGAGTAAACTTCCAGAAGTGAATGATGGGATGTGAACGATGGTAGACGACACACTGttgcaggaattaaattcctttatgttttatttaaccaattcaattaaacacTGCCCActcctaagaatttgtaagacccttatttgcataaaatggtcagagaccagtctcaaaatcaatcagtagcgtttattctcgagagtactgaacacgatacaatttaccacaggttataaactgaaaatgacgtcattagttttcgaactgtcccgtctcttctccactcttgtacaatggcagtatagttctcaagccttcccgcATCGTCCCACACCAATTTAGATCATTTATGACTGAGCCAAGGTcttcctgtgtagataagcattctagccagtctgacgatacgttcattcatttctaccacggaacagacagtcattgttctaattcttgattataattacacacattatattcagtactaggattaaaagaaaat
>TU1205835
TAAAGTTCACTCCTTAACAGTACTGGATGAAAACACAGCAAGAAAACACTTGCTGGAAGAGTGTGGGACTGCTGTACCAATTGTCCACATTCAAAGTGTGTCCCTTGCCGAGATGAGGAGCCAGCATGGAGCCAGCATGGAACCAGACACCCCAAGCCCCTCATAATGTTGGATGTCAATGGTGGATCCTGTGTAAACTATAATGTCCTGGACAAATCCTGTCTTCACGTCGCACATAACAAAGCACTTGACCACAAACCTTTGCCTTTTGGGTGGAACGCCAGCCTACCCTTCCGTAACATCAGGGACTTATCAATGCATAGGTCCTTGTATGGCACAAAGACCCTACCAAATGCTAATGTCAAGCTGCTCCAAGGCATAGCGGTTGGTCTCCTCTAgtatgtctcccaccagctcctctgtcagaaacagcatgaagcactctgcctcagagGGAAATGGCAAGGGGCTTTGCAATCCAGACTGGGACTCATTAAAGCAAGCAGCAGGGCCAGGAAATGGCTGGcagccttccagctaccacagacCTCCTGTACATTATCCACTGTCAGTCTGCCTCCTTCAacaccagcatcttcaaagggaccTCGGGCTTCGTCAGGGGACAAGGGGTCatcagattcagggttctcaatggctagaaggttggggggcagctcctcattgtcactgtcagaatctgattcctgactttGTCAGAATTGTACAAAATCTTTCCgcatttgtgagttgtctccttttgaaagacattgctaatgctacagcttagctcactagctacATACAGAAAGAACAACACTGAATCgctcagagtgggagtgagaggttaCGTGATTGACTGCCGGCACGTGCCAATTGTATCGATACATCAttatcagaaaatgttttgtgtggtaattatttatttatatactgttttattcacgttttcaagtactggtgacaaatcatgcattccgattcttgcatagattgtaatggacacattatgtgtgtaaaatacttttatgaaggttgtactgattatgatgagctaagctaattccagctatgtgtggagccatgtttgttgaaATACAACGCATTCTGGGTTTCACGTAAACGTCTGTCGGACCAAGGATtttataacaaaatgaggtgaggGAGGGTTCACTTTTTGAGTAAACTTCCAGAAGTGAATGATGGGATGTGAACGATGGTAGACGACACACTGttgcaggaattaaattcctttatgttttatttaaccaattcaattaaacacTGCCCActcctaagaatttgtaagacccttatttgcataaaatggtcagagaccagtctcaaaatcaatcagtagcgtttattctcgagagtactgaacacgatacaatttaccacaggttataaactgaaaatgacgtcattagttttcgaactgtcccgtctcttctccactcttgtacaatggcagtatagttctcaagccttcccgcATCGTCCCACACCAATTTAGATCATTTATGACTGAGCCAAGGTcttcctgtgtagataagcattctagccagtctgacgatacgttcattcatttctaccacggaacagacagtcattgttctaattcttgattataattacacacattatattcagtactaggattaaaagaaaattcatacatatacagtacataatagtattctgattagtcagtcctgattgatatgtatacataattagtcattattgagaaaaataaatccataacacacacccccttcaacatgcatactataaacagaccaaacccatcttg
>TU1205836
CTGCGTTGCACGAGGATGCTGTCTTCGGCTTCCATGGCTCACGACATGCGACCATCATTGATTGCCATGCTCCTCTTGTTGTGCTCCTTCGACTCCGCTATCcgatgggggaggagaggcagaagaTGGCTCCCCTGGCAACACCGGTCAGTCGGATAACGACAAACGACAAGACATAGATGCATCCAACATGCGCGAACGCCGTCCACCCAACGGCGTAGAAAAGcTAAACAGGTACGGTGGTTCTTCACTGTCGTGCGCACATAGGAGATCCCATGAAAAATGTGGAATTCAAAGGCCTGTCTAACTGATTCGCC

Function

NR:

description
LOW QUALITY PROTEIN: lipid droplet-associated hydrolase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475620.2 False 2368 mRNA 0.44 3 29951698 29960420
TU1205835 False 1816 TUCP 0.42 2 29951555 29953654
TU1205836 True 317 lncRNA 0.54 2 29957507 29959998

Neighbor

gene id symbol gene type direction distance location
LOC110537401 LOC106567879 coding downstream 99554 29842845 ~ 29852144 (-)
LOC110537390 NA coding downstream 194703 29745513 ~ 29757033 (-)
LOC110537384 LOC106567873 coding downstream 269338 29679311 ~ 29682360 (-)
LOC110536842 LOC106568042 coding downstream 343239 29607637 ~ 29608459 (-)
LOC110536839 LOC106567864 coding downstream 478497 29465879 ~ 29473201 (-)
LOC110537397 LOC106567884 coding upstream 5898 29966318 ~ 29968956 (-)
LOC110537402 LOC106567887 coding upstream 276927 30237347 ~ 30257703 (-)
LOC110537396 LOC106567888 coding upstream 309896 30270316 ~ 30304242 (-)
LOC110537406 LOC106567890 coding upstream 347455 30307875 ~ 30323144 (-)
LOC110537410 LOC108431284 coding upstream 386931 30347351 ~ 30369324 (-)
G1058384 LOC106567882 non-coding downstream 22025 29928616 ~ 29929673 (-)
G1058353 NA non-coding downstream 80007 29871488 ~ 29871691 (-)
G1058352 NA non-coding downstream 80700 29870758 ~ 29870998 (-)
G1058351 NA non-coding downstream 81180 29870141 ~ 29870518 (-)
G1058350 NA non-coding downstream 82214 29869136 ~ 29869484 (-)
G1058395 NA non-coding upstream 3506 29963926 ~ 29964349 (-)
G1058446 NA non-coding upstream 87688 30048108 ~ 30048488 (-)
G1058451 NA non-coding upstream 90314 30050734 ~ 30051037 (-)
G1058522 NA non-coding upstream 152087 30112507 ~ 30112725 (-)
G1058564 NA non-coding upstream 185158 30145578 ~ 30148262 (-)
G1058320 NA other downstream 148082 29800853 ~ 29803616 (-)
LOC110537376 NA other downstream 529383 29393595 ~ 29436595 (-)
G1057998 NA other downstream 683707 29267444 ~ 29267991 (-)
LOC110537362 LOC106567848 other downstream 1044679 28895582 ~ 29021369 (-)
G1057796 LOC106567846 other downstream 1065287 28882528 ~ 28886411 (-)
G1059183 NA other upstream 374407 30334827 ~ 30335256 (-)
LOC110537417 rnasek other upstream 486972 30447386 ~ 30452456 (-)
LOC110537425 LOC106567906 other upstream 674638 30633836 ~ 30638038 (-)
LOC110537432 NA other upstream 777656 30738076 ~ 30773877 (-)
G1059610 NA other upstream 1107165 31067585 ~ 31070860 (-)
LOC110537405 NA other downstream 3853 29951555 ~ 29960420 (-)

Expression


Co-expression Network