LOC110537410 (LOC108431284)


Basic Information

Item Value
gene id LOC110537410
gene name LOC108431284
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30347351 ~ 30369324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623432.2
TGTTTTTGCGCGGCGCCTTGTCTGTCACCGCGCTGAGCTGAAAGGAGAGCACagcagagtgtgtttgtgtgttatgcAGGCATTCCTCTGTCCAGCTTCAGGTGATTCAGTAGGCGCTTTTGCTGTGTGTGACAGCCACTATTCTGCTGTTGGTCGTGTGTTTAGCTCGGTAAGCCATCGAGGAGGAGCTGTCATTGAGGGCTGTTTGTATTTGACTGCAGCAGGAGACCGCCAGGAAGGGAGGGAGCAGGAAAGGGGGAGCGCTGGAacgagtgaaagagagacagatgttACCCTCCATGTCCATTGGTCTGTTCATCTTCTCTAGAGATGCTGCTTGCTAGTGTTTAGCTGTGTGGCTGATACAGCACATGCCTGAGCCAGGCTGAAGTCCTACAAGGGCGGTACTGAATGTTCTCTCTGGGTAGAGGACAGACGGCGAGGTAGCTAGTCAGCTGGGATCCATGCTGCTGTGTGCTTCGCATCAGactgtttgtgtgagagagagaagagactgaATTCCCCCACAGCAGAGGGGTTCGGAGCTCCTCGTGGCTTTGTTTAGGCTGTCTGGCAGGAGAGAAACATTGGGCTGATTTCAGTGTGTTCAGTCAGAGGCACAATAAATGTGTGAGCTGAGCTTGGCAGGTGCCTGAGTACTAGAGGTAACTTAGTGTGACTGTGGACCGGACAGACACAACACCCATTCATTCACACTTAGAGAGACATGCATACCATTGACTGTGTGGAACCGATATTAGGGACTTTGTGTATTTTCAGCCGTTACTGCACCATTAGAGCAGTCAGTTAGGCAGGCAGCTCTCCTTACACCTCAGGCTGCCGTTACATTACAGCAGTGTGCTTTGGGGACTGATACTCAGATTGCTTTATGTAGCCAGCAGGCCAGCTGTGGAGCCCCTCATCTGTCTTACCTGGCTTATGGTGGAGCCGGAGAGGTATTCTATCCTTAGAGTGCAGAAGGGATTTAGCACCTAAACTACTTGAGACTGTGAATTCAGCAGGACTTTGGTATACAGGAATTGAGATTTGGATTGGATCCGCTTGTGAAGGAAGAGCGCGGTCATTGACGGGTCTCGTGGGGGGGTATAGTAAAGACTCAGTGGTGCGTGAAATTGGTTgagggatagtgtgtgtgtgtccattctcACACGTCATGCTGTGCCCTGCATCCTGCCTGCCTCTCCTGAGGGAGATGGCTCAGTGGCGCTGCCTGCTGGGGTGGCACCGCCATCACGGGGTCAGCACGGGGGTCACGGCAGGGGCTGGGCTGGGGTCAGAAGTCAGGGTTGCGGTGGGGGACACGACTCGACCAATCTGCCGCACCAATCCTCAACAGGGGCGCAAGTACGCATCAGCCGGCTGCCTGTTGTCCCTCCACCACAGTGAGAAGCCTGAACACGAGGAAGTGTGTGAGTACCGTCCCTACACCTGCCCGTGCCCCGGAGCTTCCTGTAAGTGGCAGGGCTCCCTGGAGGCTGTCATGCCCCACCTGATGCATGCCCACAAGTCCATCACCACCCTACAGGGAGAGGACATCGTCTTCCTGGCCACAGACATCAACCTGCCGGGGGCTGTGGACTGGGTCATGATGCAGTCCTGCTTCGGCCACCACTTTATGCTGGTCCTGGAGAAGCAGGAGAAGTACGAGGGCCACCAGCAGTTCTTTGCCGTGGTGCTGCTCATCGGAACGAGGAAGCAGGCCGAGAACTTCGCCTACCGCCTGGAGCTCAACGGGAACCGGCGGCGCCTCACCTGGGAGGCCACGCCCCGCTCCATCCACGACGGCGTGGCGGCCGCCATCATGAACAGCGACTGTCTGGTGTTTGACACGTCCATTGCTCACCTGTTTGCTGACAACGGCAACCTGGGGATCAACGTCACCATCTCTATGTGCTGAGCTGCTCAGAtgtggaaacacacacacccgtGCGTAGAAGTTACACACCTCTCGTTCTCAGACTTACACACAAACCAGTATACAGTTACTGACTGCTGTGTGATgcagtagagtgtgtgtgtgagaggacaGGTAGGAGATCGAGaggatatatgtgtgtgtgtgtgttgctgcttgAGCCTTGTTGGCTCCCCATAATGCTTGAATGGAGACTGGCCTGTAGCGTAGTTTCAAGGTGTGTGCCTGTTCTCTCATTGTGTGTGCTGGAGACAGTGTACAGTAGCTTACATGTGGTGGGCTTGTAATGATTGATTCCCTACCTGTGCCCAGGTGAGTTTGCCTTGCTCCCAGGACCCCACATCCCTCTTCAACTGCTCCCACCCCGCTCACCCCCACCACCTCTTCTGCCCAGCCAACCGGTGCCAGGCAAGGAGGGCACTGCCCAGGGTAAGAAGAGGCGGTCCGTCAATCTGCTTCCACCCGGCAGATTCAGAGAAGCTCCACTTCAACAGCCAGTGGCCCCTGCAGATGCAGCTTTCTAATCCTCACAGCGAATCAAGTTTCAGTAAATTGGACAGTGGACAAATCGGGGCTTCAGAGACGCATGTGGGCAGAGTCGGGGCCTGATGGTGACCAATGCGCTGCCTCCCAGTC
>XM_021623430.2
CTGTCAGTCCAAACCATGCTCTCCAATGGACTACTTGCTTTCTGTCAAACACAGGCCGCCATGTTCTGTCCCCGGGGGCTTGTAGATTTCTTGGAGCGGAGTCTGCCACGCCGAGGAGTGCGTAAACAGTGTTCTGGGCTTCAAACTTCGCGCTGGGTTTATCCTAAAGAACTGAACTAATCGCTATGAGCCACCCGTCCTCTGCGGGCGGCGGGGGCGGAGGACTTGGTGCCGGGAAAGCTGGAGGAGGAAAGCACGGAGGTTCGGGAGGAGCTGCGGCCGCCGCTGCTGCAGTCGCCGCCGCCGGAGTAGGAGCTGTGGCCGGGTCTGTCTCGGCTCTACCTGCCGCTGTTGTTTCCTTGCCCTCAGCAGCACTACCTGGACAATCTGCTGAACTTACAGCCTTGTTTGAGTGCCCGGTTTGTTTTGACTACGTTCTGCCACCGATTCTGCAATGCCAGGCCGGGCATCTAGTTTGCAACCAATGTCGTCAAAAGCTGAGTTGTTGTCCAACTTGTCGAGGCCCTCTTACCCCGAGTATCAGGAACTTGGCTATGGAAAAAGTTGCCTCTACTCTACCGTTTCCTTGTAAGTACGCATCAGCCGGCTGCCTGTTGTCCCTCCACCACAGTGAGAAGCCTGAACACGAGGAAGTGTGTGAGTACCGTCCCTACACCTGCCCGTGCCCCGGAGCTTCCTGTAAGTGGCAGGGCTCCCTGGAGGCTGTCATGCCCCACCTGATGCATGCCCACAAGTCCATCACCACCCTACAGGGAGAGGACATCGTCTTCCTGGCCACAGACATCAACCTGCCGGGGGCTGTGGACTGGGTCATGATGCAGTCCTGCTTCGGCCACCACTTTATGCTGGTCCTGGAGAAGCAGGAGAAGTACGAGGGCCACCAGCAGTTCTTTGCCGTGGTGCTGCTCATCGGAACGAGGAAGCAGGCCGAGAACTTCGCCTACCGCCTGGAGCTCAACGGGAACCGGCGGCGCCTCACCTGGGAGGCCACGCCCCGCTCCATCCACGACGGCGTGGCGGCCGCCATCATGAACAGCGACTGTCTGGTGTTTGACACGTCCATTGCTCACCTGTTTGCTGACAACGGCAACCTGGGGATCAACGTCACCATCTCTATGTGCTGAGCTGCTCAGAtgtggaaacacacacacccgtGCGTAGAAGTTACACACCTCTCGTTCTCAGACTTACACACAAACCAGTATACAGTTACTGACTGCTGTGTGATgcagtagagtgtgtgtgtgagaggacaGGTAGGAGATCGAGaggatatatgtgtgtgtgtgtgttgctgcttgAGCCTTGTTGGCTCCCCATAATGCTTGAATGGAGACTGGCCTGTAGCGTAGTTTCAAGGTGTGTGCCTGTTCTCTCATTGTGTGTGCTGGAGACAGTGTACAGTAGCTTACATGTGGTGGGCTTGTAATGATTGATTCCCTACCTGTGCCCAGGTGAGTTTGCCTTGCTCCCAGGACCCCACATCCCTCTTCAACTGCTCCCACCCCGCTCACCCCCACCACCTCTTCTGCCCAGCCAACCGGTGCCAGGCAAGGAGGGCACTGCCCAGGGTAAGAAGAGGCGGTCCGTCAATCTGCTTCCACCCGGCAGATTCAGAGAAGCTCCACTTCAACAGCCAGTGGCCCCTGCAGATGCAGCTTTCTAATCCTCACAGCGAATCAAGTTTCAGTAAATTGGACAGTGGACAAATCGGGGCTTCAGAGACGCATGTGGGCAGAGTCGGGGCCTGATGGTGACCAATGCGCTGCCTCCCAGTC
>XM_021623431.2
CTGTCAGTCCAAACCATGCTCTCCAATGGACTACTTGCTTTCTGTCAAACACAGGCCGCCATGTTCTGTCCCCGGGGGCTTGTAGATTTCTTGGAGCGGAGTCTGCCACGCCGAGGAGTGCGTAAACAGTGTTCTGGGCTTCAAACTTCGCGCTGGGTTTATCCTAAAGAACTGAACTAATCGCTATGAGCCACCCGTCCTCTGCGGGCGGCGGGGGCGGAGGACTTGGTGCCGGGAAAGCTGGAGGAGGAAAGCACGGAGGTTCGGGAGGAGCTGCGGCCGCCGCTGCTGCAGTCGCCGCCGCCGGAGTAGGAGCTGTGGCCGGGTCTGTCTCGGCTCTACCTGCCGCTGTTGTTTCCTTGCCCTCAGCAGCACTACCTGGACAATCTGCTGAACTTACAGCCTTGTTTGAGTGCCCGGTTTGTTTTGACTACGTTCTGCCACCGATTCTGCAATGCCAGGCCGGGCATCTAGTTTGCAACCAATGTCGTCAAAAGCTGAGTTGTTGTCCAACTTGTCGAGGCCCTCTTACCCCGAGTATCAGGAACTTGGCTATGGAAAAAGTTGCCTCTACTCTACCGTTTCCTTGTAAGTACGCATCAGCCGGCTGCCTGTTGTCCCTCCACCACAGTGAGAAGCCTGAACACGAGGAAGTGTGTGAGTACCGTCCCTACACCTGCCCGTGCCCCGGAGCTTCCTGTAAGTGGCAGGGCTCCCTGGAGGCTGTCATGCCCCACCTGATGCATGCCCACAAGTCCATCACCACCCTACAGGGAGAGGACATCGTCTTCCTGGCCACAGACATCAACCTGCCGGGGGCTGTGGACTGGGTCATGATGCAGTCCTGCTTCGGCCACCACTTTATGCTGGTCCTGGAGAAGCAGGAGAAGTACGAGGGCCACCAGCAGTTCTTTGCCGTGGTGCTGCTCATCGGAACGAGGAAGCAGGCCGAGAACTTCGCCTACCGCCTGGAGCTCAACGGGAACCGGCGGCGCCTCACCTGGGAGGCCACGCCCCGCTCCATCCACGACGGCGTGGCGGCCGCCATCATGAACAGCGACTGTCTGGTGTTTGACACGTCCATTGCTCACCTGTTTGCTGACAACGGCAACCTGGGGATCAACGTCACCATCTCTATGTGCTGAGCTGCTCAGAtgtggaaacacacacacccGTGAGTTTGCCTTGCTCCCAGGACCCCACATCCCTCTTCAACTGCTCCCACCCCGCTCACCCCCACCACCTCTTCTGCCCAGCCAACCGGTGCCAGGCAAGGAGGGCACTGCCCAGGGTAAGAAGAGGCGGTCCGTCAATCTGCTTCCACCCGGCAGATTCAGAGAAGCTCCACTTCAACAGCCAGTGGCCCCTGCAGATGCAGCTTTCTAATCCTCACAGCGAATCAAGTTTCAGTAAATTGGACAGTGGACAAATCGGGGCTTCAGAGACGCATGTGGGCAGAGTCGGGGCCTGATGGTGACCAATGCGCTGCCTCCCAGTC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Siah2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08742 SIAH2; E3 ubiquitin-protein ligase SIAH2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623432.2 False 2572 mRNA 0.55 2 30347351 30361671
XM_021623430.2 False 1799 mRNA 0.57 2 30347351 30369324
XM_021623431.2 True 1498 mRNA 0.59 3 30347351 30369324
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537406 LOC106567890 coding downstream 24207 30307875 ~ 30323144 (-)
LOC110537396 LOC106567888 coding downstream 43109 30270316 ~ 30304242 (-)
LOC110537402 LOC106567887 coding downstream 89648 30237347 ~ 30257703 (-)
LOC110537397 LOC106567884 coding downstream 378395 29966318 ~ 29968956 (-)
LOC110537405 NA coding downstream 386931 29951555 ~ 29960420 (-)
LOC110537411 LOC106567893 coding upstream 843 30370167 ~ 30380619 (-)
si:ch1073-143l10.2 LOC106567895 coding upstream 48718 30418042 ~ 30422902 (-)
LOC110537417 rnasek coding upstream 78062 30447386 ~ 30452456 (-)
LOC110537415 LOC106567896 coding upstream 87211 30456535 ~ 30460284 (-)
LOC110537418 LOC106567899 coding upstream 92825 30462149 ~ 30465256 (-)
G1059154 NA non-coding downstream 1892 30340029 ~ 30345459 (-)
G1059160 NA non-coding downstream 14469 30330970 ~ 30332882 (-)
G1059168 NA non-coding downstream 91047 30256078 ~ 30256304 (-)
G1059166 NA non-coding downstream 92878 30254184 ~ 30254473 (-)
G1059165 NA non-coding downstream 93754 30253329 ~ 30253597 (-)
G1059202 NA non-coding upstream 209 30369533 ~ 30369732 (-)
G1059215 NA non-coding upstream 21296 30390620 ~ 30390906 (-)
G1059220 NA non-coding upstream 32674 30401998 ~ 30402224 (-)
G1059226 NA non-coding upstream 55357 30424681 ~ 30425255 (-)
G1059232 NA non-coding upstream 62772 30432096 ~ 30432310 (-)
G1059183 NA other downstream 12095 30334827 ~ 30335256 (-)
G1058320 NA other downstream 543735 29800853 ~ 29803616 (-)
LOC110537376 NA other downstream 925036 29393595 ~ 29436595 (-)
G1057998 NA other downstream 1079360 29267444 ~ 29267991 (-)
LOC110537425 LOC106567906 other upstream 265734 30633836 ~ 30638038 (-)
LOC110537432 NA other upstream 368752 30738076 ~ 30773877 (-)
G1059610 NA other upstream 698261 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1621886 31991210 ~ 31992555 (-)

Expression

LOC110537410(LOC108431284) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110537410(LOC108431284) Expression in each Bioproject

Bar chart with 21 bars.
LOC110537410(LOC108431284) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network