LOC110537411 (LOC106567893)


Basic Information

Item Value
gene id LOC110537411
gene name LOC106567893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30370167 ~ 30380619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623433.2
TGTAGGGTAAATTGGTAGGGGGGAAATTCCCCGCAAAGTGTAATAAAATCATACTGCAGAATAGTAGGTTGATACAATAGGTGGCGTCTTGCACCTACAACATCTGTTTCCGGACCGGCATGATAcagaatattattattattattattattattattccatcTTCAACCTAGATTTTAGTGCGGAAGTGGATGCGCGGGAAAGGAACAAACGTGAAAATGGCTACTCCGAAAACTGTTCCTAAAGATGCACAGGTTATGATTCAAATCCTCAAAGACATGGGGATAACAGAGTATGAGCCCAGAGTGATTAATCAAATGCTGGAATTTACCTACAGATATGTGACAACCATTATCGAGGATGCCAAAATCTATGCAACACATGCTAAGAAGAACAATGTGGATGCTGACGATATAAGACTGGCGATCCAGAGTCGCATGGACCAGTCCttcacctccccaccaccacgaGATTTCCTGTTGGAGGTAGCTAGGCAGAAGAACCAGACCCCGCTGCCTTTGATTAAGCCATACACTGGGCCCCGCCTGCCCCCAGACCGTTACTGTCTAACAGCTCCTAACTACAGGCTCAAATCCATACAGAAAAAGATGTCCTCATCCGCGGGGAGAATTACAGTGCCTCGTCTCAGTGTAGCAGCTGTATCCAGCAGGTCCAGCACACCTACCTTTGGCACTCCCTCAGTTCAGTCAGTCACTACCAAAGTGGGGACGCCAATGTCTCTGTCGGGGCAGCGCTTCACCGTTCAGATCCCATCCTCACAGACTGCAGCCTCCAAGTCCTccacaccatctaccccaacgGTTCAAAACGTCCTAATCAATCCCTCCCTGATCGGCTCTAAGAACATCCTCATCACCACCAACATGGTGTCACAGAACTTGGCCAGTGAATCGCTGAAAAGGAAGCACGAAGATGATGACTATGATGCATTATGACCTCATGGATAAGTAGATAAAGCAGGGAGGAGTCGGCTAGATGAAAGCTGTGTGCTGTAAATATTGTAGAAGTTAGTTTTGAGGTTAGCCAGCCAGTTTACAATTCTCCCATCACATTGTGTAAAATTATTAACTGTCATGCCTGTTTGCCACAAATTTTTGTACATACAAATAAAGATATTTGTGACAAGAAGAGAATAaa

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 9-like isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K14535 TAF9; transcription initiation factor TFIID subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623433.2 True 1158 mRNA 0.45 7 30370167 30380619

Neighbor

gene id symbol gene type direction distance location
LOC110537410 LOC108431284 coding downstream 843 30347351 ~ 30369324 (-)
LOC110537406 LOC106567890 coding downstream 47023 30307875 ~ 30323144 (-)
LOC110537396 LOC106567888 coding downstream 65925 30270316 ~ 30304242 (-)
LOC110537402 LOC106567887 coding downstream 112464 30237347 ~ 30257703 (-)
LOC110537397 LOC106567884 coding downstream 401211 29966318 ~ 29968956 (-)
si:ch1073-143l10.2 LOC106567895 coding upstream 37423 30418042 ~ 30422902 (-)
LOC110537417 rnasek coding upstream 66767 30447386 ~ 30452456 (-)
LOC110537415 LOC106567896 coding upstream 75916 30456535 ~ 30460284 (-)
LOC110537418 LOC106567899 coding upstream 81530 30462149 ~ 30465256 (-)
LOC110537419 LOC106567900 coding upstream 86534 30467153 ~ 30474411 (-)
G1059202 NA non-coding downstream 435 30369533 ~ 30369732 (-)
G1059194 NA non-coding downstream 10090 30359830 ~ 30360077 (-)
G1059190 NA non-coding downstream 13927 30355946 ~ 30356240 (-)
G1059188 NA non-coding downstream 14367 30355498 ~ 30355800 (-)
G1059185 NA non-coding downstream 20278 30349643 ~ 30349889 (-)
G1059215 NA non-coding upstream 10001 30390620 ~ 30390906 (-)
G1059220 NA non-coding upstream 21379 30401998 ~ 30402224 (-)
G1059226 NA non-coding upstream 44062 30424681 ~ 30425255 (-)
G1059232 NA non-coding upstream 51477 30432096 ~ 30432310 (-)
G1059239 NA non-coding upstream 60918 30441537 ~ 30442343 (-)
G1059183 NA other downstream 34911 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 416513 29951555 ~ 29960420 (-)
G1058320 NA other downstream 566551 29800853 ~ 29803616 (-)
LOC110537376 NA other downstream 947852 29393595 ~ 29436595 (-)
G1057998 NA other downstream 1102176 29267444 ~ 29267991 (-)
LOC110537425 LOC106567906 other upstream 254439 30633836 ~ 30638038 (-)
LOC110537432 NA other upstream 357457 30738076 ~ 30773877 (-)
G1059610 NA other upstream 686966 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1610591 31991210 ~ 31992555 (-)

Expression


Co-expression Network