si:ch1073-143l10.2 (LOC106567895)


Basic Information

Item Value
gene id si:ch1073-143l10.2
gene name LOC106567895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30418042 ~ 30422902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623434.2
GTAATTTTATGTgtctatttttgtattttgtatgatTTCGTTGTCGTTTTTCCCCTTCCTACATTGGATATTTTTCTATAGTGTACCACCcctacagtaggtggcggcatgcacctcTAGGATTGTTTGCGGACCGCCATAATACTGCGGGAAGAAGACATCCTGTTGCAGCTGAGCCCAGACAGCCATGACTAGCAGTGCTTTTGCTTTGATCTGTATACTGTGCAGTCTTTTTCTCCGCATCCTCAGTCCTGTTGAAGTTTGTGAGCACAGCCCTGCAACTAATTATTCATCAGCGCAGCTAAGAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA
>XM_036937382.1
TGAAGGAAGTGACCGTTTTAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA
>XM_036937378.1
TGATGTTCCGCCCTCACAGTGTACCACCcctacagtaggtggcggcatgcacctcTAGGATTGTTTGCGGACCGCCATAATACTGCGGGAAGAAGACATCCTGTTGCAGCTGAGCCCAGACAGCCATGACTAGCAGTGCTTTTGCTTTGATCTGTATACTGTGCAGTCTTTTTCTCCGCATCCTCAGTCCTGTTGAAGTTTGTGAGCACAGCCCTGCAACTAATTATTCATCAGCGCAGCTAAGAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA
>XM_036937377.1
GTTAGGGTGAAGGAGACAGGTGGCAAGAGTAAGGGCTTTCCAGCGTGTCTCCTATCTGGAGGCGGTGAGAAGATTTGAAGGAGCGTGAGAAGACAGTGATAACTGAGCCTACACAAGTGAACGTTTCTCGGATACCAAGGAATCCTGATATATTACATGTGAAATATATTGCATGTTGATTTTGTAGTATATTTTTGCTGATAAACTACACAGCACACACGAAGATGAAATCTGAGAAATTGAAGTCATTTGTACCACCcctacagtaggtggcggcatgcacctcTAGGATTGTTTGCGGACCGCCATAATACTGCGGGAAGAAGACATCCTGTTGCAGCTGAGCCCAGACAGCCATGACTAGCAGTGCTTTTGCTTTGATCTGTATACTGTGCAGTCTTTTTCTCCGCATCCTCAGTCCTGTTGAAGTTTGTGAGCACAGCCCTGCAACTAATTATTCATCAGCGCAGCTAAGAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA
>XM_036937379.1
TGTTAGGGTGAAGGAGACAGGTGGCAAGAGTAAGGGCTTTCCAGCGTGTCTCCTATCTGGAGGCGGTGAGAAGATTTGAAGGAGCGTGAGAAGACAGTGATAACTGAGCCTACACAAGTGAACGTTTCTCGGATACCAAGGAATCCTGATATATTACATGTGAAATATATTGCATGTTGATTTTGTAGTATATTTTTGCTGATAAACTACACAGCACACACGAAGATGAAATCTGAGAAATTGAAGTCATTTGTACCACCcctacagtaggtggcggcatgcacctcTAGGATTGTTTGCGGACCGCCATAATACTGCGGGAAGAAGACATCCTGTTGCAGCTGAGCCCAGACAGCCATGACTAGCAGTGCTTTTGCTTTGATCTGTATACTGTGCAGTCTTTTTCTCCGCATCCTCAGTCCTGTTGAAGTTTGTGAGCACAGCCCTGCAACTAATTATTCATCAGCGCAGCTAAGAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAcaGTGGCAGGCACACTCTTGTGTCCCAACTAATGTCAATGTCTGCTTTGATCAGAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA
>XM_036937380.1
TGTTAGGGTGAAGGAGACAGGTGGCAAGAGTAAGGGCTTTCCAGCGTGTCTCCTATCTGGAGGCGGTGAGAAGATTTGAAGGAGCGTGAGAAGACAGTGATAACTGAGCCTACACAAGTGAACGTTTCTCGGATACCAAGGAATCCTGATATATTACATGTGAAATATATTGCATGTTGATTTTGTAGTATATTTTTGCTGATAAACTACACAGCACACACGAAGATGAAATCTGAGAAATTGAAGTCATTAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA
>XM_036937381.1
TGTTAGGGTGAAGGAGACAGGTGGCAAGAGTAAGGGCTTTCCAGCGTGTCTCCTATCTGGAGGCGGTGAGAAGATTTGAAGGAGCGTGAGAAGACAGTGATAACTGAGCCTACACAAGTGAACGTTTCTCGGATACCAAGGAATCCTGATATATTACATGTGAAATATATTGCATGTTGATTTTGTAGTATATTTTTGCTGATAAACTACACAGCACACACGAAGATGAAATCTGAGAAATTGAAGTCATTTGTACCACCcctacagtaggtggcggcatgcacctcTAGGATTGTTTGCGGACCGCCATAATACTGCGGGAAGAAGACATCCTGTTGCAGCTGAGCCCAGACAGCCATGACTAGCAGTGCTTTTGCTTTGATCTGTATACTGTGCAGTCTTTTTCTCCGCATCCTCAGTCCTGTTGAAGTTTGTGAGCACAGCCCTGCAACTAATTATTCATCAGCGCAGCTAAGGTTAGCGCATACATTCGTGTGTGAATTTCAGATAAAAGTATATTGCTGAGAAAAGACAGCAATGGAAGGGTGGAAGAGTCACGTGCGCGCTAGACTGTTCCAGAGAGATTGTACACAAAAGGACCCCTTCAGTGGTATCTTTAACACCTTGTCCGAGCTAGCGGAACAGCTTGATTTACGGGATACACTTTGGGATGAGGTACAGAGACCCAGTTCTGAAGGAGATGTTGGGCTGACGGTTGACCACAGAGAACTATACCTCCAGCTCAGAGAGAGTGAACATATAACAGAAAAGCTCTCTCAGACAGTCTCTGACCTGACCACTGTCATGTACCTGAAAGATGCTGAGCTCCAATACTGCCACTCACAAGTCTCCCGCTATCGGAAGGAAGCTGTCACTCAAGCCAGGGAGGCCAACCTTCTGCAGGCCAGCCTATCAGAGTTTGAGTTTGCATTGGCGAGCCAATCAAAGGAGTTGGCAGCCCTGCGGTTGGAGCAGCGGGAGCTGAAGGAGGGGCTTGCAGCggcctggagagagaaagaagagcttCTGGAGCGATGGATGGATGAGAAGAAGGAGGAGGCGGAGAGGGTGAACAGGCACAATGACACACAGGAAAGGTGGCATCGTTTCACCCGGCGACTCAACAAGCATCACCGTAGAGAGATGCTGCGACCAGGTGAGCAGACCAACTCCTGGACGACTGGTAGGCCTACAACTGAACCAGCAACCACCATACAGAAGGAGGGTGGTGCACACTGCCCAGGATGGACCTTGACCTTTAATCCCAAAAGCCTCCTGTACTGAAACACTCCTTCCTGTAAGACACACTGAAAAAACTAGACCTTGAATGTGACTTTTTTGTGTGTATACATTGAAGGATATTTGAATGTGGGCTTTTAATCAATACTGTTGTGAATTTCAGATACGGTATGTATAGGCTTGTAAATTAGTACCCAAGACCTAACTCAATGTTTTCAAATACCATGAGAATAAAGTAACTGTTCAGTCATTTTTCACTAAAA

Function

NR:

description
uncharacterized protein LOC110537412 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623434.2 False 1284 mRNA 0.47 8 30418042 30422519
XM_036937382.1 False 997 mRNA 0.48 8 30418042 30422542
XM_036937378.1 False 1222 mRNA 0.49 9 30418042 30422582
XM_036937377.1 False 1453 mRNA 0.47 9 30418042 30422901
XM_036937379.1 False 1508 mRNA 0.47 9 30418042 30422902
XM_036937380.1 False 1229 mRNA 0.47 8 30418042 30422902
XM_036937381.1 True 1502 mRNA 0.47 9 30418042 30422902
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537411 LOC106567893 coding downstream 37423 30370167 ~ 30380619 (-)
LOC110537410 LOC108431284 coding downstream 48718 30347351 ~ 30369324 (-)
LOC110537406 LOC106567890 coding downstream 94898 30307875 ~ 30323144 (-)
LOC110537396 LOC106567888 coding downstream 113800 30270316 ~ 30304242 (-)
LOC110537402 LOC106567887 coding downstream 160339 30237347 ~ 30257703 (-)
LOC110537417 rnasek coding upstream 24484 30447386 ~ 30452456 (-)
LOC110537415 LOC106567896 coding upstream 33633 30456535 ~ 30460284 (-)
LOC110537418 LOC106567899 coding upstream 39247 30462149 ~ 30465256 (-)
LOC110537419 LOC106567900 coding upstream 44251 30467153 ~ 30474411 (-)
LOC110536844 LOC106603575 coding upstream 53998 30476900 ~ 30479671 (-)
G1059220 NA non-coding downstream 15818 30401998 ~ 30402224 (-)
G1059215 NA non-coding downstream 27136 30390620 ~ 30390906 (-)
G1059202 NA non-coding downstream 48310 30369533 ~ 30369732 (-)
G1059194 NA non-coding downstream 57965 30359830 ~ 30360077 (-)
G1059190 NA non-coding downstream 61802 30355946 ~ 30356240 (-)
G1059226 NA non-coding upstream 1779 30424681 ~ 30425255 (-)
G1059232 NA non-coding upstream 9194 30432096 ~ 30432310 (-)
G1059239 NA non-coding upstream 18635 30441537 ~ 30442343 (-)
G1059240 NA non-coding upstream 19826 30442728 ~ 30442956 (-)
G1059258 NA non-coding upstream 81286 30504188 ~ 30504825 (-)
G1059183 NA other downstream 82786 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 464388 29951555 ~ 29960420 (-)
G1058320 NA other downstream 614426 29800853 ~ 29803616 (-)
LOC110537376 NA other downstream 995727 29393595 ~ 29436595 (-)
G1057998 NA other downstream 1150051 29267444 ~ 29267991 (-)
LOC110537425 LOC106567906 other upstream 212156 30633836 ~ 30638038 (-)
LOC110537432 NA other upstream 315174 30738076 ~ 30773877 (-)
G1059610 NA other upstream 644683 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1568308 31991210 ~ 31992555 (-)

Expression

si:ch1073-143l10.2(LOC106567895) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

si:ch1073-143l10.2(LOC106567895) Expression in each Bioproject

Bar chart with 21 bars.
si:ch1073-143l10.2(LOC106567895) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network