LOC110537415 (LOC106567896)



Basic Information


Item Value
gene id LOC110537415
gene name LOC106567896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30456535 ~ 30460284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021623439.2
TTATATCTAACCAGGGAGAGGCGCTGTTATGACAGATTACGAAGTGCCTCTATTTGGTGGAGGACTATGTTGTGAAATCTTTCAATTAGTTCTATTTTGATAAATAGTAACATTTTTTTGATATTTTGTCGATTTCGTTGACGACGCAATGGACAACTTAACCGGAGGATGGAACTTTTCAACGACGCAAATGTTTTGTTGAGGACTGTTGTGTTTTATTCTCTGACTagttagctactagctagctagccaagttgGAGTGTTAAtggttagctactgtagctagctagctaaccctaAAAAGTCACGTCTCAGCTGGCCGCCTAACCTAATTTCCCTTAAAAGTTATTGTAAGGGATATATCTCTCTAGTTGACAGTATTGGTCAAGTATGTGTTTGTTTAGCCTTTGTGCGACAACAGGAATTGCATTTGAGTACTTTATAAGGTTAGCTAGTTACGAATAGTCGCTTGCTGTAACTTTGAGCCAAGTCTGACTTCATCTTACAAAAATGAGATAGAGGGAAGACACCAAGGACATTTCCCGCTGATTTAGCTGCTCTGAATTGGACCGAAAGGTTTGTGTGTGAGGCCTGCAGGTCGGGCTTTCACCCGGATAGAGTAGGGCCGTACGCCGCCTCTGAGCGCTCCTAGGCCAGCAGCTCGCGCTGCTAGGCTGGAGGCCGGTGATTTCAAGAAATGGAACGAATGGAAGTGGACCAGTGCGCAGGCGCAGCTGCCGGGAGCGGAGGCGGGGCTCTTCGTAGATCGAACAGCGCCCCCATGATCACGAGTGTCAGCGATGGTATGACAGTGTTCAGTCCAACTATTTCACCCCGGTATCGACGGAGCAGTGTCTCTGTCAACCCCAGCTGCCCTTctctgGCTGTCCCCCTGTCCCCTTTCTCATTGGGTGGTGAGAGACCAGACCACAAAAGGCAGGAAGAGAATATGGAGATGACACTCAGGGGGAGTCTTCAGAAACTGAGTGATTCCAACCTGGTCCCTCCTGTCAGTCACTGGCATGACCATTCATCAGTGGGATTCCATTTACCGGACAGTGGTACCACCCCTAATTCGTCCCCTAGTCCAACTCGAAGGTTTAGGGGGCCAACAGTCAGCTCTACTGTGAGATGGCCTGCCCTGACTCCACTGAAAAGGAAAGGAGGAGTGGAGTCTGATGGTCCGCCGAAGAAGCTGTTTGTTGCCGGGGTAACAGATCCTGCTCACCGAACTAGTTACACAGTCAGTGTGACTCAGGCATCTGCTGGTTCTCCTAcaggtggtgtgtctgtgtgtggtgctaGTCCCCAGGGTAGTACCCtgtacctgtctcctcccccctcatTCACCTCTCACCAGCCCAATATCTAGAAACCACAACACCAGCAGCCTATCACAGACCAGGACTACAGTCAGTCCTAGATTCTACTCACAGCCTATCAGAGCGCTCCTCTCCCTCAAACCATCAGAGCCTTGGGGAAACTCATCATATTCCTTGCCTCCTGAAGTAATCATGTCTTGAGTTGTAATCAAGATAATATATAGATGTTACACAAAGACTGGCACCTGTGCTTTGTTAATCAGAAGGTTGCATGAAATGCCCTGCCAAAGGAAGTCaggagtgaagagactatacttTTCCTTGTTGGGCTTTTGTTTATATCAAAGTTAGAGGTGTTAAAAGGCCTTTTGTGTTGTGTTCAGGGGTAATGGTGAGGGCATGTTGTAATCCCACTGAACGTGACCCAATAGTCCAGTATTCTTTGATAGTCCAGAAGTAAGCGCTCAAAAATGAGACATGAAGATGAGGTGTCACAGCAGACTGTCAAGCCAGCGGTGGCTCAGTTTGTCTATGTGAATAGTGTATTAATATGTGAATACTGATATAAGTAGGGCTGCCTTTAAGGCAGGACTGGGAGTGGGTTCTTTGCCTAGGGATATAGAATCCCTAGGCAAAGCTCTGCCCAGAGGACCCACCAAGTCCTGGTCCTTTATGGCCTAAACCTAATGAGAGATTGGCGTGGATACTCACCTCTtgacaggtgtgtgtaaactttagTTTGATAGAAAGGACCTCGACTGGTGATCTCAGTCCTCTGGGTAGTGCGTGATATTACCCTTTCTCTACATGCATACTACTTTAAAAAGGGTAGCCCTTGGAGTGTTATCACATTTTCCCATTGATTACATGAATGTTATTATTTGACTTCTGTAATTTGGTATGGTTGTACATGCTCAGGACCCTCATCGATATTGTGAAATATCATAAGTGACATCATGGGTATATCATGTTGTTTGGGTTGATGTAATCTATGGGAAAGTTCTGTTTTTTAATCCCATGCATGAGTCTGTGACCTCCAGACCTTTTGACTTGTGAAATAGAGTACAAGTTGCTTAGAGAAGTGtcttttacaacaacaaaaaatatattgttATTGATAGTAACTATGTGTAATACTCTTCAAATGCCCTTTCCAGAGCTGAGTTTTACAGCAACAGACAGATTCTTTTATCTATATTTTGTCTCCCTTTTTGTGGACGGAACATTCTACTTCCAATTAAGATTTTGCACAGTATTAGTTTCACATTATTAATCAATATTGCTGTTACACAAATGGGATCCTGATTAAGACATGCTGTTGCGTTGTATTTGTTGCTTAATTTGTTAATTTCTCATcaggtctctgtcctgtctcaaaGAAGTGCTTAGGTCAGCAAGGGTTGAGGGTCATCTTCTGATCTTAACCCCAGATTTAGAAACTTTGTTTGTTTTTCCTCAGTGACAATCAGTGAATTTGGAGGGAAATAAAAACTCCAGTTGTTTTAAGTT

Function


NR:

description
protein FAM122A-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021623439.2 True 2831 mRNA 0.45 9 30456535 30460284

Neighbor


gene id symbol gene type direction distance location
LOC110537417 rnasek coding downstream 4079 30447386 ~ 30452456 (-)
si:ch1073-143l10.2 LOC106567895 coding downstream 33633 30418042 ~ 30422902 (-)
LOC110537411 LOC106567893 coding downstream 75916 30370167 ~ 30380619 (-)
LOC110537410 LOC108431284 coding downstream 87211 30347351 ~ 30369324 (-)
LOC110537406 LOC106567890 coding downstream 133391 30307875 ~ 30323144 (-)
LOC110537418 LOC106567899 coding upstream 1865 30462149 ~ 30465256 (-)
LOC110537419 LOC106567900 coding upstream 6869 30467153 ~ 30474411 (-)
LOC110536844 LOC106603575 coding upstream 16616 30476900 ~ 30479671 (-)
LOC110537420 LOC106567901 coding upstream 33837 30494121 ~ 30520834 (-)
LOC110537422 LOC106567903 coding upstream 77503 30537787 ~ 30563755 (-)
G1059240 NA non-coding downstream 13579 30442728 ~ 30442956 (-)
G1059239 NA non-coding downstream 14192 30441537 ~ 30442343 (-)
G1059232 NA non-coding downstream 24225 30432096 ~ 30432310 (-)
G1059226 NA non-coding downstream 31280 30424681 ~ 30425255 (-)
G1059220 NA non-coding downstream 54311 30401998 ~ 30402224 (-)
G1059258 NA non-coding upstream 43904 30504188 ~ 30504825 (-)
G1059280 NA non-coding upstream 125610 30585894 ~ 30586190 (-)
G1059281 NA non-coding upstream 127459 30587743 ~ 30587974 (-)
G1059282 NA non-coding upstream 128453 30588737 ~ 30589756 (-)
G1059283 NA non-coding upstream 129863 30590147 ~ 30590386 (-)
G1059183 NA other downstream 121279 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 502881 29951555 ~ 29960420 (-)
G1058320 NA other downstream 652919 29800853 ~ 29803616 (-)
LOC110537376 NA other downstream 1034220 29393595 ~ 29436595 (-)
LOC110537425 LOC106567906 other upstream 174774 30633836 ~ 30638038 (-)
LOC110537432 NA other upstream 277792 30738076 ~ 30773877 (-)
G1059610 NA other upstream 607301 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1530926 31991210 ~ 31992555 (-)
G1062051 NA other upstream 2579201 33039485 ~ 33086066 (-)

Expression


LOC110537415(LOC106567896) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110537415(LOC106567896) Expression in each Bioproject

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LOC110537415(LOC106567896) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network