LOC110537420 (LOC106567901)


Basic Information

Item Value
gene id LOC110537420
gene name LOC106567901
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30494121 ~ 30520834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937384.1
acacacatcatgcacacagagagagagagtaaaaaaacagagagagagagagagtagagagagagacagagagatgtcaaGTGCAGTTGTGTCCCAACTGTAAAGCCGGAGGTATCTGGAGGTATCTGAGCTCTCCCTCATAATTGTTGCTTTCTTCCCTGCAACTCTAATTTATGTCAGTATTCTCTGATCTAGCGAAGATGGTGTCTTCGCTCCAGATTATGTGGATGTTCAAGGATGGGGTGATTCTGTTCTGTACACCGTTCCTGCTCCTCCCGCTGCCTCTACTGATCGGAACCACGgagGCAAGATGTGCCTATGTGATAGCTCTGATGGCAGTGTACTGGTGTACTGAGGTATTGCCACTAGCGGTGACTGCTCTCCTGCCCGCTGTCCTTTTCCCTCTGTTTGGCATCATGGAGTCCAAGCAGGTGTGTATGCAGTACCTGAAGGACACCAACATGCTGTTTGTAGGCGGTCTGATGGTGGCTGTTGCCGTGGAGACATGGAACCTTCACAAGCGCATCGCCCTCAGGGTTCTACTTGCTGTGGGGGTGCGGCCTGCCCTTCTGATGCTAGGGTTCATGGGTGTGACAGCGTTCCTGTCCATGTGGATCAGTAACACAGCCACCACAGCTATGATGGTCCCCATTGTCCAGGCTGTCCTGGAGCAGCTCAACAGCCCACAGAATGGGGAGAAGCCCTTGCCCATCCCCCAGAGCCAGGAGAATGTTATGATTCCTGAGGAAAGACTGGAGAACAGTTCAAACCCACAGGACAAACTTATCATCCAGGACAATCACATTCCACTGGAGAAACCAGCCACAGAGGATAAACTGGACTCCCCAGACAAACCAGTTCACCAGGACAACTCTCTGACTGATGGGAAGCCAGTGGTAGTGTCCATGGTCTTGAAGGAGGGGACTGAAGCAGAGGAGCAGgttggggaggaagaggaggagaaggagaggacaaaAATGTGTAAAGGCTtgacgttgtgtgtgtgttacgctgCCAGCATCGGAGGCACTGCCACTCTCACTGGTACCGGACCCAACCTCGTCCTCACAGGGCAGATGAGCCAACTCTTCCCTCAGAACGGTGACGTGGTTAACTTTGCCTCGTGGTTCGCCTTTGCCTTCCCCACAATGCTGCTAATGCTGATGCTGGCCTGGCTCTGGCTCCAGCTCGTCTTCATCGGCTTCGAtcTGAAGCGTACGTGGGGCTGTGGTGCTGTGCAGTCAGAGAAAGAACATGCAGCGTATGATTTGATCCGTGAGGAGCATCGTCGTCTGGGGCCAGTGTCCTATGGAGAGTTGAGTGTCCTGGGGCTCTTCATTCTGCTGGTGGTGTTGTGGTTCACACGAAGCCCAGGCTTCATCAACGGATGGGCAACCCACATCTTCAACACAAAGGCAGAGTTTGTGACTGATGCCACAGTGGCAGTGTTTGTTGCCGTGCTGTTGTTCGTCTTGCCCTCTGAGCCCCCCCGCTACCTCTGCTTCTGGAGAACACAGAGCTTTGACAcagAGCCCCACCGCGGGCCCACCCCTGCCCTGTTGACCTGGCAGGTGGCCCAGAGGAAGATGCCCTGGAGCATTGTACTGCTGCTAGGAGGAGGCTTCGCTCTGGCTAAGGGCAgcgagGTGTCTGGTCTGTCGCGGTGGCTGGGTGATCAGATGATACCTCtctgctccatccctccctggGCTATCGCAGTCATCCTCTGTCTCCTCACCGCCATCTTCACTGAGTGTGCCAGCAACGTGGCTACCGCTACACTCTTCCTGCCCATCCTAGCCTCCATGTCCCAATCCATAGGAGTGAACCCACTGTATGTGATGGTACCCTGTACCCTCAGTGCCTCCTTTGCCTTCATGCTCCCTGTCGCCACGCCTCCTAACGCCATCGTGTTCTCTTATGGATACCTGAAGGTGTCAGATATGgctAAGACAGGTATAGTGATGAACATCCTTGGGATCCTGTGCATCACTCTGGCCATTAACAGCTGGGGTAGAGCCATTTTCAACCTGGACACCTTCCCCTCCTGGGCCAACACCACCGCTAACATCACTACAGgaggatgaggggggggggggatgacccCCAAAAACACCATCATATGCCCCTGTACTGCAATACCACTGCTACCGATGCCAAAAaggggatgagggaggaggagaccaCTGACAACCCTCACTGGGGCAACAGAGGGCTGGCCATGGGAACACTGGTTTACTGGTTTATTATCAGTGTATTTTATACTTATTATGTACAgataatattattatattatatggtAATGAGGGAGCCTTAGAGAACTCTGATGATAAATAACTTGTAAAAGCCAAGACACGCTGTAATACTGTAACTTATATTTGTATTAATAGCAATATTGTGATATCAATTgatattatataaatatattatctTACATAaaattacagtgcctttggaaagtattcagaacccttgactttttccacattttgttattac

Function

NR:

description
LOW QUALITY PROTEIN: solute carrier family 13 member 5-like

GO: NA

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937384.1 True 2499 mRNA 0.51 12 30494121 30520834

Neighbor

gene id symbol gene type direction distance location
LOC110536844 LOC106603575 coding downstream 14450 30476900 ~ 30479671 (-)
LOC110537419 LOC106567900 coding downstream 19710 30467153 ~ 30474411 (-)
LOC110537418 LOC106567899 coding downstream 28865 30462149 ~ 30465256 (-)
LOC110537415 LOC106567896 coding downstream 33837 30456535 ~ 30460284 (-)
LOC110537417 rnasek coding downstream 41665 30447386 ~ 30452456 (-)
LOC110537422 LOC106567903 coding upstream 16953 30537787 ~ 30563755 (-)
LOC110537425 LOC106567906 coding upstream 113002 30633836 ~ 30638038 (-)
LOC110537426 NA coding upstream 127842 30648676 ~ 30672125 (-)
mipepb LOC106567911 coding upstream 218931 30739765 ~ 30755440 (-)
LOC110537432 NA coding upstream 249330 30738076 ~ 30773877 (-)
G1059240 NA non-coding downstream 51165 30442728 ~ 30442956 (-)
G1059239 NA non-coding downstream 51778 30441537 ~ 30442343 (-)
G1059232 NA non-coding downstream 61811 30432096 ~ 30432310 (-)
G1059226 NA non-coding downstream 68866 30424681 ~ 30425255 (-)
G1059220 NA non-coding downstream 91897 30401998 ~ 30402224 (-)
G1059280 NA non-coding upstream 65060 30585894 ~ 30586190 (-)
G1059281 NA non-coding upstream 66909 30587743 ~ 30587974 (-)
G1059282 NA non-coding upstream 67903 30588737 ~ 30589756 (-)
G1059283 NA non-coding upstream 69313 30590147 ~ 30590386 (-)
G1059318 NA non-coding upstream 151657 30672491 ~ 30672741 (-)
G1059183 NA other downstream 158865 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 540467 29951555 ~ 29960420 (-)
G1058320 NA other downstream 690505 29800853 ~ 29803616 (-)
LOC110537376 NA other downstream 1071806 29393595 ~ 29436595 (-)
G1059610 NA other upstream 546751 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1470376 31991210 ~ 31992555 (-)
G1062051 NA other upstream 2518651 33039485 ~ 33086066 (-)

Expression


Co-expression Network